Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38356 * 120.00045 * 2 1 4 4 Br 1.89099 * 120.01196 * 359.97438 * 3 2 1 5 5 C 1.38301 * 119.97607 * 180.02562 * 3 2 1 6 6 C 1.38239 * 119.99341 * 359.97438 * 5 3 2 7 7 C 1.38225 * 120.01055 * 0.02562 * 6 5 3 8 8 C 1.38194 * 120.01086 * 180.02562 * 2 1 3 9 9 C 1.50707 * 119.99145 * 0.02562 * 8 2 1 10 10 S 1.81393 * 109.47301 * 269.97912 * 9 8 2 11 11 O 1.42099 * 108.58144 * 294.48859 * 10 9 8 12 12 O 1.42100 * 108.57724 * 65.51180 * 10 9 8 13 13 C 1.81392 * 101.92344 * 179.97438 * 10 9 8 14 14 C 1.53002 * 109.47316 * 180.02562 * 13 10 9 15 15 C 1.53002 * 109.47161 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47079 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00320 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00185 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99971 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00146 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47298 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47060 * 120.00314 * 20 18 16 23 23 H 1.48505 * 109.46862 * 239.99879 * 20 18 16 24 24 H 1.09000 * 109.46829 * 90.00409 * 1 2 3 25 25 H 1.09001 * 109.46616 * 210.00105 * 1 2 3 26 26 H 1.09003 * 109.47355 * 329.99911 * 1 2 3 27 27 H 1.08001 * 120.00625 * 180.02562 * 5 3 2 28 28 H 1.08000 * 119.99613 * 179.97438 * 6 5 3 29 29 H 1.07994 * 119.98972 * 179.72457 * 7 6 5 30 30 H 1.09001 * 109.46613 * 29.97992 * 9 8 2 31 31 H 1.08995 * 109.46748 * 149.97695 * 9 8 2 32 32 H 1.09004 * 109.47282 * 299.99792 * 13 10 9 33 33 H 1.08996 * 109.47454 * 59.99985 * 13 10 9 34 34 H 1.08993 * 109.47205 * 299.99946 * 14 13 10 35 35 H 1.09001 * 109.47042 * 60.00318 * 14 13 10 36 36 H 1.08993 * 109.47056 * 300.00085 * 15 14 13 37 37 H 1.09001 * 109.46843 * 60.00244 * 15 14 13 38 38 H 0.96997 * 120.00184 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1982 0.0000 4 35 1.2537 2.8360 -0.0007 5 6 3.5818 1.1976 -0.0005 6 6 4.2723 0.0000 -0.0005 7 6 3.5808 -1.1968 -0.0005 8 6 2.1982 -1.1967 -0.0005 9 6 1.4447 -2.5019 -0.0017 10 16 1.1423 -3.0270 1.7080 11 8 2.3915 -3.3152 2.3209 12 8 0.2684 -2.0895 2.3217 13 6 0.2426 -4.5837 1.4683 14 6 -0.1057 -5.1866 2.8307 15 6 -0.8652 -6.4993 2.6285 16 6 -1.2076 -7.0933 3.9704 17 1 -0.9135 -6.5853 4.8768 18 6 -1.8975 -8.2851 4.0410 19 7 -2.2562 -8.9036 2.9372 20 14 -2.3226 -9.0211 5.7044 21 1 -1.8110 -8.1370 6.7823 22 1 -3.7971 -9.1481 5.8272 23 1 -1.6984 -10.3630 5.8261 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3632 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 4.1223 2.1326 -0.0001 28 1 5.3523 -0.0005 -0.0014 29 1 4.1206 -2.1321 -0.0050 30 1 0.4924 -2.3710 -0.5155 31 1 2.0339 -3.2609 -0.5162 32 1 -0.6745 -4.3914 0.9114 33 1 0.8666 -5.2819 0.9105 34 1 0.8110 -5.3789 3.3880 35 1 -0.7301 -4.4882 3.3881 36 1 -1.7819 -6.3066 2.0714 37 1 -0.2412 -7.1978 2.0709 38 1 -2.7411 -9.7422 2.9868 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090092805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -63.100487 kcal Electronic energy + Delta-G solvation = -21360.123313 eV Core-core repulsion = 17954.528883 eV Total energy + Delta-G solvation = -3405.594430 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 360.018 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.04309 -36.86159 -35.89528 -34.69180 -33.99853 -33.37965 -32.21572 -30.34313 -28.30465 -27.72688 -26.86096 -23.76796 -22.21289 -21.50014 -20.46425 -18.77562 -16.95304 -16.88757 -16.61698 -16.29072 -15.77330 -15.63072 -15.07497 -14.49488 -14.33938 -14.22386 -13.71527 -13.49528 -13.14906 -12.66759 -12.63975 -12.58469 -12.29615 -11.97150 -11.87285 -11.80705 -11.60203 -11.50258 -11.44796 -11.21965 -10.94461 -10.86360 -10.84185 -10.41277 -10.37233 -9.96350 -9.44079 -9.17932 -8.97577 -8.92239 -8.42433 -6.07325 -4.10155 -0.09787 0.75105 0.92528 1.30403 2.83292 3.18244 3.28795 3.36411 3.41566 3.61109 3.96082 4.14139 4.39698 4.41727 4.52067 4.68642 4.72193 4.97439 5.06398 5.10114 5.13466 5.27847 5.29495 5.36479 5.40765 5.45386 5.82273 5.84107 5.94701 5.97571 6.04787 6.26848 6.40442 6.43594 6.85434 7.55002 7.64524 7.90961 8.31411 8.96355 9.54761 11.03980 Molecular weight = 360.02amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002157 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.337754 B =12975.772893 C =13516.916056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.036 4.036 3 C -0.095 4.095 4 Br -0.045 7.045 5 C -0.081 4.081 6 C -0.120 4.120 7 C -0.084 4.084 8 C -0.082 4.082 9 C -0.582 4.582 10 S 2.399 3.601 11 O -0.935 6.935 12 O -0.931 6.931 13 C -0.592 4.592 14 C -0.105 4.105 15 C 0.029 3.971 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.855 23.059 -12.601 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.174 4.174 4 Br 0.041 6.959 5 C -0.101 4.101 6 C -0.139 4.139 7 C -0.103 4.103 8 C -0.084 4.084 9 C -0.706 4.706 10 S 2.583 3.417 11 O -0.932 6.932 12 O -0.928 6.928 13 C -0.723 4.723 14 C -0.144 4.144 15 C -0.009 4.009 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.657 23.973 -11.898 28.807 hybrid contribution -0.237 -1.303 -0.086 1.327 sum 10.421 22.669 -11.984 27.678 Atomic orbital electron populations 1.21257 0.89709 1.05659 1.03245 1.19725 0.97090 0.90878 0.96228 1.21682 0.94779 0.91296 1.09664 1.96687 1.75806 1.25806 1.97637 1.21186 0.91948 0.99345 0.97661 1.21150 1.00515 0.91475 1.00720 1.21326 0.93051 0.99445 0.96453 1.18778 0.93531 0.91599 1.04503 1.29530 1.09933 1.03807 1.27377 1.08870 0.76744 0.78555 0.77489 1.93562 1.42502 1.84961 1.72158 1.93561 1.66573 1.60572 1.72120 1.30327 1.13664 1.18473 1.09853 1.21530 1.01914 1.01159 0.89801 1.19091 0.94926 0.89299 0.97572 1.21287 1.35974 1.06377 0.92672 0.92279 1.25023 0.95718 0.96975 0.96694 1.69965 1.39496 1.17153 1.26882 0.86499 0.78120 0.79086 0.84126 1.19567 1.20929 1.20929 0.90003 0.89485 0.89668 0.84642 0.84477 0.84361 0.83785 0.83715 0.85235 0.85273 0.91411 0.91338 0.96064 0.96093 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.73 36.01 0.31 -1.17 16 2 C -0.04 -0.41 5.88 -104.59 -0.62 -1.03 16 3 C -0.09 -1.01 6.22 -39.51 -0.25 -1.25 16 4 Br -0.05 -0.43 31.79 -68.01 -2.16 -2.59 16 5 C -0.08 -0.74 9.79 -39.56 -0.39 -1.13 16 6 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 7 C -0.08 -0.83 9.70 -39.58 -0.38 -1.21 16 8 C -0.08 -0.90 5.14 -104.63 -0.54 -1.44 16 9 C -0.58 -5.46 5.22 36.01 0.19 -5.27 16 10 S 2.40 32.97 4.69 -107.50 -0.50 32.47 16 11 O -0.93 -15.72 18.10 -57.83 -1.05 -16.76 16 12 O -0.93 -15.36 16.31 -57.83 -0.94 -16.30 16 13 C -0.59 -8.46 5.81 37.16 0.22 -8.24 16 14 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 15 C 0.03 0.73 4.97 -27.88 -0.14 0.60 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.94 4.82 -51.93 -0.25 0.69 16 26 H 0.08 0.88 6.65 -51.93 -0.35 0.54 16 27 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.01 6.70 -51.92 -0.35 0.66 16 31 H 0.14 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.13 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -35.04 349.74 -11.34 -46.38 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -5.13 Total: -1.98 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: -2.54 Total: -37.31 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.99 Total: -33.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 32.97 SS G_CDS: -0.50 Total: 32.47 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.16 Total: -2.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.04 -11.34 -46.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090092805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.722 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds