Wall clock time and date at job start Tue Mar 31 2020 07:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47048 * 2 1 4 4 N 1.46491 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00065 * 277.85807 * 4 3 2 6 6 H 1.08003 * 120.00226 * 50.05092 * 5 4 3 7 7 C 1.38817 * 120.00227 * 230.05198 * 5 4 3 8 8 N 1.31615 * 119.99693 * 18.90806 * 7 5 4 9 9 Si 1.86803 * 120.00256 * 198.91767 * 7 5 4 10 10 H 1.48495 * 109.47358 * 59.99339 * 9 7 5 11 11 H 1.48493 * 109.47175 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46582 * 299.99641 * 9 7 5 13 13 S 1.65604 * 120.00214 * 97.85687 * 4 3 2 14 14 O 1.42093 * 106.40289 * 165.25604 * 13 4 3 15 15 O 1.42102 * 106.39903 * 32.33583 * 13 4 3 16 16 C 1.76198 * 107.21847 * 278.80018 * 13 4 3 17 17 C 1.38233 * 120.00779 * 113.54110 * 16 13 4 18 18 C 1.38218 * 120.01413 * 179.97438 * 17 16 13 19 19 C 1.50697 * 119.99482 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.01947 * 359.68075 * 18 17 16 21 21 C 1.38202 * 120.00344 * 0.59920 * 20 18 17 22 22 C 1.38303 * 120.00598 * 293.51966 * 16 13 4 23 23 Br 1.89107 * 120.00815 * 0.04639 * 22 16 13 24 24 H 1.08996 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47057 * 299.99658 * 1 2 3 26 26 H 1.08998 * 109.47381 * 60.00208 * 1 2 3 27 27 H 1.08993 * 109.47453 * 239.99752 * 2 1 3 28 28 H 1.08998 * 109.47381 * 119.99792 * 2 1 3 29 29 H 1.09000 * 109.46845 * 59.99504 * 3 2 1 30 30 H 1.08998 * 109.46860 * 300.00111 * 3 2 1 31 31 H 0.97000 * 120.00184 * 179.97438 * 8 7 5 32 32 H 1.08006 * 119.99801 * 359.97438 * 17 16 13 33 33 H 1.08997 * 109.47429 * 89.99642 * 19 18 17 34 34 H 1.09006 * 109.47477 * 210.00410 * 19 18 17 35 35 H 1.09007 * 109.47013 * 330.00086 * 19 18 17 36 36 H 1.07995 * 120.00029 * 180.29826 * 20 18 17 37 37 H 1.08006 * 119.99849 * 179.69721 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.2803 1.1738 6 1 3.9403 0.4649 1.8365 7 6 5.2058 2.1639 1.5127 8 7 5.2745 3.3421 0.9301 9 14 6.4750 1.6805 2.7952 10 1 7.1947 0.4622 2.3448 11 1 7.4453 2.7903 2.9742 12 1 5.7942 1.4045 4.0858 13 16 4.3324 1.6389 -1.4216 14 8 5.6747 1.9400 -1.0660 15 8 3.5351 2.4875 -2.2362 16 6 4.3699 0.0708 -2.2242 17 6 3.6922 -0.1128 -3.4149 18 6 3.7220 -1.3427 -4.0449 19 6 2.9825 -1.5425 -5.3427 20 6 4.4351 -2.3881 -3.4879 21 6 5.1082 -2.2071 -2.2945 22 6 5.0779 -0.9765 -1.6632 23 35 6.0047 -0.7263 -0.0339 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.9840 3.9597 1.1671 32 1 3.1392 0.7050 -3.8532 33 1 3.6417 -1.3032 -6.1771 34 1 2.6596 -2.5807 -5.4208 35 1 2.1112 -0.8880 -5.3689 36 1 4.4621 -3.3476 -3.9828 37 1 5.6612 -3.0252 -1.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092368043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:25 Heat of formation + Delta-G solvation = -39.733498 kcal Electronic energy + Delta-G solvation = -23712.628448 eV Core-core repulsion = 20242.621376 eV Total energy + Delta-G solvation = -3470.007072 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.91649 -36.09615 -35.52170 -33.93718 -33.07553 -32.89615 -30.87640 -30.77877 -29.83845 -26.10551 -25.94061 -23.58548 -22.79666 -21.18892 -20.67918 -18.76247 -17.13992 -16.28906 -15.77138 -15.50759 -15.11877 -14.87804 -14.31218 -13.94364 -13.90361 -13.70692 -13.13904 -13.01204 -12.80996 -12.39832 -12.23549 -11.93918 -11.74915 -11.59008 -11.42331 -11.32232 -11.10812 -10.84942 -10.74319 -10.42603 -10.39545 -10.24328 -10.23040 -9.96020 -9.76096 -9.50144 -9.05988 -8.84934 -8.52430 -8.08124 -7.60983 -6.52627 -4.05914 1.24284 1.50932 2.05138 2.27515 3.19481 3.23283 3.27849 3.75444 4.13530 4.69169 4.95402 4.99614 5.00775 5.25483 5.39616 5.49129 5.56842 5.62022 5.62701 5.65734 5.82372 5.83654 6.11158 6.14779 6.16194 6.24670 6.33465 6.37560 6.40261 6.50691 6.63571 6.66283 6.75183 6.98029 7.12636 7.40824 7.51379 8.24202 8.91920 9.35374 10.55660 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.007324 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.978635 B = 3822.014559 C = 4632.291200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.131 3.869 4 N -0.806 5.806 5 C -0.239 4.239 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.784 5.784 9 Si 0.908 3.092 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.271 1.271 13 S 2.532 3.468 14 O -0.935 6.935 15 O -1.013 7.013 16 C -0.633 4.633 17 C -0.038 4.038 18 C -0.107 4.107 19 C -0.112 4.112 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.014 4.014 23 Br -0.005 7.005 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.282 0.718 32 H 0.136 0.864 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -10.445 -3.323 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.003 3.997 4 N -0.628 5.628 5 C -0.389 4.389 6 H 0.100 0.900 7 C -0.150 4.150 8 N -0.421 5.421 9 Si 0.734 3.266 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.196 1.196 13 S 2.629 3.371 14 O -0.923 6.923 15 O -1.002 7.002 16 C -0.708 4.708 17 C -0.057 4.057 18 C -0.108 4.108 19 C -0.168 4.168 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.095 4.095 23 Br 0.081 6.919 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.142 0.858 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.584 -9.500 -3.428 10.425 hybrid contribution 0.535 -1.168 -0.205 1.301 sum -2.049 -10.668 -3.633 11.455 Atomic orbital electron populations 1.21700 0.96415 1.00795 1.01585 1.22048 0.94933 0.99486 1.02157 1.21222 0.81435 0.94607 1.02415 1.52939 1.10031 1.82307 1.17538 1.18966 1.16351 1.09424 0.94209 0.90046 1.25565 0.98843 0.93418 0.97206 1.69744 1.29833 1.04900 1.37668 0.86275 0.80870 0.79198 0.80285 1.19045 1.20323 1.19580 1.12113 0.75393 0.75994 0.73624 1.93437 1.36334 1.81782 1.80724 1.93274 1.70819 1.65463 1.70660 1.32827 1.03671 1.27301 1.06972 1.20857 0.95512 0.96637 0.92716 1.20094 0.99114 0.94192 0.97414 1.20777 0.99706 1.02277 0.94073 1.21054 0.96543 0.98382 0.95097 1.21176 1.00748 0.96136 0.96024 1.21709 0.97524 0.94996 0.95240 1.96991 1.74909 1.96670 1.23327 0.93479 0.92700 0.93028 0.92928 0.91364 0.90488 0.91545 0.90767 0.84592 0.91270 0.91674 0.91303 0.85787 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.15 -2.50 6.20 -26.73 -0.17 -2.67 16 3 C 0.13 2.64 5.66 -4.04 -0.02 2.61 16 4 N -0.81 -19.06 2.69 -59.91 -0.16 -19.22 16 5 C -0.24 -5.73 6.24 -15.06 -0.09 -5.82 16 6 H 0.08 1.83 7.90 -52.48 -0.41 1.42 16 7 C 0.07 1.70 3.83 -17.43 -0.07 1.63 16 8 N -0.78 -21.40 11.53 55.49 0.64 -20.76 16 9 Si 0.91 19.85 28.52 -169.99 -4.85 15.00 16 10 H -0.26 -5.66 6.61 56.52 0.37 -5.29 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 13 S 2.53 64.38 4.67 -107.50 -0.50 63.88 16 14 O -0.93 -26.16 12.31 -57.17 -0.70 -26.87 16 15 O -1.01 -27.54 15.72 -57.17 -0.90 -28.44 16 16 C -0.63 -13.76 5.80 -39.56 -0.23 -13.99 16 17 C -0.04 -0.72 9.20 -39.59 -0.36 -1.08 16 18 C -0.11 -1.68 5.88 -104.62 -0.62 -2.30 16 19 C -0.11 -1.29 10.01 36.00 0.36 -0.93 16 20 C -0.09 -1.36 9.70 -39.58 -0.38 -1.74 16 21 C -0.12 -2.01 9.79 -39.56 -0.39 -2.39 16 22 C -0.01 -0.29 6.21 -39.52 -0.25 -0.54 16 23 Br -0.01 -0.11 26.12 -68.01 -1.78 -1.89 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 30 H 0.07 1.36 7.03 -51.93 -0.36 1.00 16 31 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.14 2.57 7.33 -52.48 -0.38 2.18 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.07 0.76 8.09 -51.92 -0.42 0.34 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -30.51 330.51 -10.08 -40.59 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.96 Total: 1.58 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -1.85 Total: -28.85 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.48 Total: -39.98 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -1.60 Total: -55.30 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.85 Total: 15.00 kcal Atomic # 16 Polarization: 64.38 SS G_CDS: -0.50 Total: 63.88 kcal Atomic # 35 Polarization: -0.11 SS G_CDS: -1.78 Total: -1.89 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.51 -10.08 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.857 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds