Wall clock time and date at job start Tue Mar 31 2020 07:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47048 * 2 1 4 4 N 1.46491 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00065 * 277.85807 * 4 3 2 6 6 H 1.08003 * 120.00226 * 50.05092 * 5 4 3 7 7 C 1.38817 * 120.00227 * 230.05198 * 5 4 3 8 8 N 1.31615 * 119.99693 * 18.90806 * 7 5 4 9 9 Si 1.86803 * 120.00256 * 198.91767 * 7 5 4 10 10 H 1.48495 * 109.47358 * 59.99339 * 9 7 5 11 11 H 1.48493 * 109.47175 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.46582 * 299.99641 * 9 7 5 13 13 S 1.65604 * 120.00214 * 97.85687 * 4 3 2 14 14 O 1.42093 * 106.40289 * 165.25604 * 13 4 3 15 15 O 1.42102 * 106.39903 * 32.33583 * 13 4 3 16 16 C 1.76198 * 107.21847 * 278.80018 * 13 4 3 17 17 C 1.38233 * 120.00779 * 113.54110 * 16 13 4 18 18 C 1.38218 * 120.01413 * 179.97438 * 17 16 13 19 19 C 1.50697 * 119.99482 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.01947 * 359.68075 * 18 17 16 21 21 C 1.38202 * 120.00344 * 0.59920 * 20 18 17 22 22 C 1.38303 * 120.00598 * 293.51966 * 16 13 4 23 23 Br 1.89107 * 120.00815 * 0.04639 * 22 16 13 24 24 H 1.08996 * 109.46844 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47057 * 299.99658 * 1 2 3 26 26 H 1.08998 * 109.47381 * 60.00208 * 1 2 3 27 27 H 1.08993 * 109.47453 * 239.99752 * 2 1 3 28 28 H 1.08998 * 109.47381 * 119.99792 * 2 1 3 29 29 H 1.09000 * 109.46845 * 59.99504 * 3 2 1 30 30 H 1.08998 * 109.46860 * 300.00111 * 3 2 1 31 31 H 0.97000 * 120.00184 * 179.97438 * 8 7 5 32 32 H 1.08006 * 119.99801 * 359.97438 * 17 16 13 33 33 H 1.08997 * 109.47429 * 89.99642 * 19 18 17 34 34 H 1.09006 * 109.47477 * 210.00410 * 19 18 17 35 35 H 1.09007 * 109.47013 * 330.00086 * 19 18 17 36 36 H 1.07995 * 120.00029 * 180.29826 * 20 18 17 37 37 H 1.08006 * 119.99849 * 179.69721 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.2803 1.1738 6 1 3.9403 0.4649 1.8365 7 6 5.2058 2.1639 1.5127 8 7 5.2745 3.3421 0.9301 9 14 6.4750 1.6805 2.7952 10 1 7.1947 0.4622 2.3448 11 1 7.4453 2.7903 2.9742 12 1 5.7942 1.4045 4.0858 13 16 4.3324 1.6389 -1.4216 14 8 5.6747 1.9400 -1.0660 15 8 3.5351 2.4875 -2.2362 16 6 4.3699 0.0708 -2.2242 17 6 3.6922 -0.1128 -3.4149 18 6 3.7220 -1.3427 -4.0449 19 6 2.9825 -1.5425 -5.3427 20 6 4.4351 -2.3881 -3.4879 21 6 5.1082 -2.2071 -2.2945 22 6 5.0779 -0.9765 -1.6632 23 35 6.0047 -0.7263 -0.0339 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.9840 3.9597 1.1671 32 1 3.1392 0.7050 -3.8532 33 1 3.6417 -1.3032 -6.1771 34 1 2.6596 -2.5807 -5.4208 35 1 2.1112 -0.8880 -5.3689 36 1 4.4621 -3.3476 -3.9828 37 1 5.6612 -3.0252 -1.8569 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092368043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:24 Heat of formation + Delta-G solvation = -58.424544 kcal Electronic energy + Delta-G solvation = -23713.438953 eV Core-core repulsion = 20242.621376 eV Total energy + Delta-G solvation = -3470.817576 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.26618 -37.79919 -37.54065 -35.96850 -34.65512 -34.30798 -32.54623 -32.17952 -31.24164 -27.62733 -27.27216 -25.25185 -24.21473 -22.55252 -22.13293 -20.64112 -18.85907 -18.00230 -17.46100 -17.17261 -16.73988 -16.44672 -15.94047 -15.43003 -15.27894 -14.98124 -14.84131 -14.45614 -14.17035 -13.79518 -13.51798 -13.33572 -13.24835 -13.07113 -12.94397 -12.90344 -12.58488 -12.39162 -12.38041 -12.26791 -12.06195 -11.99588 -11.90132 -11.47565 -11.39342 -11.20855 -10.79403 -10.33312 -10.23445 -9.49433 -9.43339 -8.42357 -5.98267 -0.19783 0.13228 0.20621 0.74651 1.46302 1.48181 1.53356 2.31220 2.41031 2.92037 3.11587 3.52756 3.75061 3.84539 4.11047 4.20062 4.21500 4.30389 4.35916 4.50092 4.58391 4.66982 4.74185 4.80195 4.90196 4.93999 5.05176 5.07666 5.14451 5.17893 5.24741 5.35252 5.40632 5.49953 5.56200 5.79283 5.83986 6.34194 7.06113 7.49637 8.66600 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.012542 B = 0.007324 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.978635 B = 3822.014559 C = 4632.291200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C 0.124 3.876 4 N -0.818 5.818 5 C -0.236 4.236 6 H 0.095 0.905 7 C 0.032 3.968 8 N -0.832 5.832 9 Si 0.945 3.055 10 H -0.259 1.259 11 H -0.286 1.286 12 H -0.246 1.246 13 S 2.535 3.465 14 O -0.971 6.971 15 O -1.046 7.046 16 C -0.658 4.658 17 C -0.058 4.058 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.075 4.075 21 C -0.116 4.116 22 C -0.035 4.035 23 Br -0.026 7.026 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.277 0.723 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.176 0.824 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -14.127 -4.224 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.641 5.641 5 C -0.386 4.386 6 H 0.113 0.887 7 C -0.182 4.182 8 N -0.471 5.471 9 Si 0.768 3.232 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.170 1.170 13 S 2.637 3.363 14 O -0.960 6.960 15 O -1.036 7.036 16 C -0.739 4.739 17 C -0.078 4.078 18 C -0.098 4.098 19 C -0.168 4.168 20 C -0.093 4.093 21 C -0.137 4.137 22 C -0.115 4.115 23 Br 0.061 6.939 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.580 -13.151 -4.281 14.286 hybrid contribution 0.764 -0.166 -0.127 0.792 sum -2.816 -13.316 -4.408 14.306 Atomic orbital electron populations 1.21672 0.93562 1.02403 1.02316 1.21917 0.97299 0.96703 1.01599 1.21412 0.79755 0.96997 1.02037 1.52875 1.11207 1.83125 1.16890 1.19208 1.16058 1.09158 0.94142 0.88739 1.26294 1.00309 0.93075 0.98526 1.69848 1.30778 1.06308 1.40153 0.85685 0.79171 0.78791 0.79542 1.18444 1.21109 1.16998 1.11333 0.74518 0.76516 0.73886 1.93385 1.37884 1.83218 1.81475 1.93214 1.71330 1.67456 1.71608 1.32152 1.06962 1.25952 1.08843 1.20964 0.95944 0.98392 0.92512 1.20564 0.98246 0.92627 0.98386 1.20904 0.99574 1.04430 0.91908 1.21649 0.93881 0.99976 0.93804 1.21585 1.00445 0.95229 0.96392 1.21778 0.98381 0.96267 0.95083 1.96930 1.75167 1.96939 1.24912 0.91380 0.91627 0.92739 0.93924 0.91385 0.90019 0.92716 0.91320 0.85595 0.89758 0.88494 0.91129 0.80657 0.82551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.14 -4.53 6.20 30.60 0.19 -4.34 16 3 C 0.12 5.13 5.66 86.38 0.49 5.61 16 4 N -0.82 -39.78 2.69 -343.46 -0.92 -40.70 16 5 C -0.24 -11.50 6.24 84.04 0.52 -10.98 16 6 H 0.10 4.26 7.90 -2.91 -0.02 4.23 16 7 C 0.03 1.63 3.83 84.86 0.33 1.96 16 8 N -0.83 -47.46 11.53 21.65 0.25 -47.21 16 9 Si 0.94 40.80 28.52 68.60 1.96 42.75 16 10 H -0.26 -10.86 6.61 99.48 0.66 -10.20 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 13 S 2.54 133.94 4.67 -56.49 -0.26 133.67 16 14 O -0.97 -56.81 12.31 -128.00 -1.58 -58.39 16 15 O -1.05 -59.82 15.72 -128.00 -2.01 -61.83 16 16 C -0.66 -28.80 5.80 22.28 0.13 -28.67 16 17 C -0.06 -2.20 9.20 22.26 0.20 -1.99 16 18 C -0.10 -2.71 5.88 -19.86 -0.12 -2.83 16 19 C -0.11 -2.08 10.01 71.23 0.71 -1.36 16 20 C -0.07 -1.83 9.70 22.27 0.22 -1.62 16 21 C -0.12 -3.48 9.79 22.29 0.22 -3.26 16 22 C -0.03 -1.37 6.21 22.31 0.14 -1.24 16 23 Br -0.03 -1.07 26.12 -20.37 -0.53 -1.60 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.06 1.52 8.14 -2.38 -0.02 1.51 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 30 H 0.05 2.34 7.03 -2.39 -0.02 2.32 16 31 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.13 4.87 7.33 -2.91 -0.02 4.85 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.24 8.09 -2.38 -0.02 1.22 16 35 H 0.07 1.32 8.09 -2.38 -0.02 1.30 16 36 H 0.18 2.60 8.06 -2.91 -0.02 2.57 16 37 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.30 330.51 1.66 -68.64 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.02 Total: 16.27 kcal Atomic # 6 Polarization: -55.34 SS G_CDS: 3.74 Total: -51.59 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -0.67 Total: -87.91 kcal Atomic # 8 Polarization: -116.64 SS G_CDS: -3.59 Total: -120.23 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.96 Total: 42.75 kcal Atomic # 16 Polarization: 133.94 SS G_CDS: -0.26 Total: 133.67 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -0.53 Total: -1.60 kcal Total: -70.30 1.66 -68.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092368043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.211 kcal (2) G-P(sol) polarization free energy of solvation -70.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds