Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47078 * 270.00732 * 3 2 1 5 5 H 1.48504 * 109.46830 * 30.00715 * 3 2 1 6 6 H 1.48501 * 109.46885 * 150.00330 * 3 2 1 7 7 C 1.39866 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99739 * 197.95930 * 7 2 1 9 9 C 1.41133 * 119.99916 * 17.95871 * 7 2 1 10 10 C 1.40893 * 120.15364 * 204.83980 * 9 7 2 11 11 C 1.36340 * 119.83593 * 180.25652 * 10 9 7 12 12 C 1.39570 * 120.15779 * 359.49782 * 11 10 9 13 13 N 1.38859 * 119.83888 * 180.25511 * 12 11 10 14 14 C 1.46498 * 119.99754 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47016 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.02625 * 259.72586 * 15 14 13 17 17 C 1.38248 * 120.05338 * 179.74800 * 16 15 14 18 18 C 1.38281 * 120.11132 * 0.54896 * 17 16 15 19 19 C 1.38125 * 120.05871 * 359.69761 * 18 17 16 20 20 C 1.38716 * 120.03175 * 79.99689 * 15 14 13 21 21 O 1.35902 * 120.05332 * 359.95656 * 20 15 14 22 22 C 1.42901 * 116.99938 * 179.97438 * 21 20 15 23 23 C 1.50701 * 109.46880 * 179.97438 * 22 21 20 24 24 C 1.38671 * 120.41930 * 269.71800 * 23 22 21 25 25 C 1.38626 * 118.41952 * 179.78427 * 24 23 22 26 26 C 1.38234 * 119.15830 * 0.51681 * 25 24 23 27 27 N 1.31855 * 120.76416 * 359.72450 * 26 25 24 28 28 C 1.31882 * 121.72333 * 0.02562 * 27 26 25 29 29 C 1.39559 * 120.31699 * 0.28309 * 12 11 10 30 30 C 1.36338 * 120.16450 * 359.97407 * 29 12 11 31 31 H 0.97001 * 120.00040 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.07970 * 0.02562 * 10 9 7 33 33 H 1.07992 * 119.91978 * 179.78346 * 11 10 9 34 34 H 0.97005 * 120.00059 * 0.02562 * 13 12 11 35 35 H 1.09002 * 109.47327 * 299.99529 * 14 13 12 36 36 H 1.08997 * 109.47201 * 60.00469 * 14 13 12 37 37 H 1.07997 * 119.97075 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.94083 * 180.29456 * 17 16 15 39 39 H 1.08002 * 119.97372 * 179.72697 * 18 17 16 40 40 H 1.07999 * 120.03182 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47059 * 300.00089 * 22 21 20 42 42 H 1.08998 * 109.46915 * 60.00075 * 22 21 20 43 43 H 1.08001 * 120.78877 * 0.03472 * 24 23 22 44 44 H 1.07998 * 120.42041 * 180.22510 * 25 24 23 45 45 H 1.07999 * 119.61594 * 179.74845 * 26 25 24 46 46 H 1.08004 * 119.61377 * 179.97438 * 28 27 26 47 47 H 1.08011 * 119.91970 * 179.97438 * 29 12 11 48 48 H 1.08002 * 120.08601 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4405 2.6526 0.7002 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2878 9 6 1.3543 -2.4036 -0.3779 10 6 1.8237 -3.6469 0.0898 11 6 1.1900 -4.7951 -0.2831 12 6 0.0726 -4.7400 -1.1175 13 7 -0.5709 -5.9131 -1.4889 14 6 -1.7438 -5.8594 -2.3650 15 6 -2.2499 -7.2570 -2.6131 16 6 -1.9380 -7.9062 -3.7922 17 6 -2.3976 -9.1903 -4.0182 18 6 -3.1799 -9.8239 -3.0702 19 6 -3.4989 -9.1774 -1.8920 20 6 -3.0341 -7.8907 -1.6604 21 8 -3.3462 -7.2525 -0.5018 22 6 -4.1580 -7.9656 0.4333 23 6 -4.3978 -7.1064 1.6479 24 6 -3.5294 -7.1592 2.7278 25 6 -3.7869 -6.3476 3.8217 26 6 -4.8989 -5.5266 3.8044 27 7 -5.7060 -5.5062 2.7619 28 6 -5.4893 -6.2608 1.7023 29 6 -0.4007 -3.5116 -1.5809 30 6 0.2261 -2.3558 -1.2204 31 1 -0.4850 0.8401 0.0004 32 1 2.6856 -3.6906 0.7391 33 1 1.5508 -5.7491 0.0718 34 1 -0.2439 -6.7682 -1.1681 35 1 -2.5266 -5.2692 -1.8886 36 1 -1.4679 -5.3988 -3.3136 37 1 -1.3308 -7.4118 -4.5360 38 1 -2.1487 -9.6978 -4.9384 39 1 -3.5415 -10.8254 -3.2509 40 1 -4.1095 -9.6728 -1.1517 41 1 -5.1126 -8.2148 -0.0302 42 1 -3.6489 -8.8820 0.7317 43 1 -2.6706 -7.8139 2.7150 44 1 -3.1297 -6.3601 4.6786 45 1 -5.1088 -4.8944 4.6544 46 1 -6.1729 -6.2173 0.8672 47 1 -1.2658 -3.4765 -2.2267 48 1 -0.1415 -1.4058 -1.5795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095352965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = 51.366932 kcal Electronic energy + Delta-G solvation = -30368.355908 eV Core-core repulsion = 26353.100682 eV Total energy + Delta-G solvation = -4015.255226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.69144 -40.03176 -37.93513 -37.51767 -35.10786 -33.36974 -33.07552 -31.99964 -31.30282 -30.01612 -29.38658 -28.44428 -27.05768 -25.74810 -23.80255 -23.77192 -23.07520 -21.87099 -21.58265 -20.73757 -19.83614 -18.23570 -17.35228 -17.13960 -16.83933 -16.47916 -16.31323 -15.59079 -15.34630 -15.22585 -14.91855 -14.71320 -14.39807 -14.00600 -13.84477 -13.76170 -13.26892 -13.19557 -13.01778 -12.80531 -12.78942 -12.44254 -12.41932 -11.95534 -11.76347 -11.72944 -11.52010 -11.22175 -11.15479 -11.00207 -10.85568 -10.70838 -10.40818 -10.01848 -9.63780 -9.63509 -9.28137 -9.26509 -9.16907 -9.01307 -8.45511 -8.28786 -7.42210 -6.57757 -6.29895 -3.96784 0.79527 1.10213 1.13999 1.29801 2.96921 3.04574 3.16418 3.19065 3.22032 3.42021 3.57013 3.76327 4.10116 4.21925 4.43737 4.47536 4.56332 4.64883 4.70978 4.74791 4.77337 4.83394 4.91630 4.94361 5.11195 5.19298 5.24419 5.37964 5.50717 5.55128 5.73166 5.80646 5.90348 5.90921 6.00032 6.12934 6.16776 6.32462 6.34749 6.39491 6.46870 6.48376 6.65676 6.99772 7.01006 7.25956 7.27688 7.42475 7.62556 7.75998 7.77968 7.91736 8.21792 8.36511 8.56941 8.78629 8.88058 9.12444 9.22429 10.43793 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.002894 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.041065 B = 9671.808944 C =12412.495411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.468 4.468 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.186 4.186 11 C -0.161 4.161 12 C 0.100 3.900 13 N -0.752 5.752 14 C 0.188 3.812 15 C -0.125 4.125 16 C -0.065 4.065 17 C -0.162 4.162 18 C -0.080 4.080 19 C -0.215 4.215 20 C 0.145 3.855 21 O -0.294 6.294 22 C 0.107 3.893 23 C -0.149 4.149 24 C -0.047 4.047 25 C -0.173 4.173 26 C 0.109 3.891 27 N -0.486 5.486 28 C 0.124 3.876 29 C -0.165 4.165 30 C -0.123 4.123 31 H 0.275 0.725 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.383 0.617 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.087 0.913 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 -18.833 -0.448 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.206 4.206 11 C -0.183 4.183 12 C 0.002 3.998 13 N -0.387 5.387 14 C 0.063 3.937 15 C -0.126 4.126 16 C -0.083 4.083 17 C -0.180 4.180 18 C -0.099 4.099 19 C -0.234 4.234 20 C 0.099 3.901 21 O -0.207 6.207 22 C 0.032 3.968 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.192 4.192 26 C -0.048 4.048 27 N -0.195 5.195 28 C -0.033 4.033 29 C -0.187 4.187 30 C -0.143 4.143 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.215 0.785 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.176 0.824 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.967 -17.795 -0.436 21.449 hybrid contribution 1.107 -0.318 0.212 1.172 sum -10.859 -18.113 -0.224 21.120 Atomic orbital electron populations 1.69867 1.07319 1.28505 1.37880 1.25784 0.94632 1.00797 0.92815 0.86425 0.80461 0.81348 0.79041 1.19580 1.20635 1.18917 1.19354 0.97882 0.91405 1.41306 0.91031 1.17475 0.92527 0.91954 0.91042 1.20528 1.02723 0.92625 1.04711 1.19773 0.98118 0.96932 1.03487 1.17341 0.95339 0.85598 1.01478 1.43785 1.32170 1.05735 1.57020 1.19700 0.88898 0.90704 0.94381 1.19486 1.01085 0.98068 0.93965 1.21003 0.97316 0.94264 0.95753 1.21041 1.01105 0.95647 1.00186 1.20913 0.96691 0.99296 0.92962 1.21208 1.06634 0.95181 1.00393 1.18875 0.94303 0.90902 0.86047 1.86312 1.66366 1.42265 1.25730 1.21439 0.94973 0.93550 0.86861 1.20442 0.97907 1.01171 0.95561 1.21526 0.96958 0.96603 0.92204 1.22190 0.99258 0.97903 0.99890 1.22886 0.90321 0.95438 0.96143 1.67748 1.30387 1.20538 1.00781 1.22677 0.95079 0.89870 0.95684 1.20085 1.01524 0.91944 1.05141 1.20930 0.98108 0.96403 0.98817 0.91395 0.89192 0.89814 0.78532 0.92445 0.92891 0.85147 0.85936 0.85991 0.85617 0.90921 0.91065 0.84637 0.84324 0.82446 0.82745 0.89490 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.06 10.96 55.54 0.61 -21.46 16 2 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 3 Si 0.90 19.69 29.60 -169.99 -5.03 14.66 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.47 -13.02 9.03 -37.88 -0.34 -13.37 16 8 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 9 C 0.07 2.02 5.57 -106.79 -0.60 1.43 16 10 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 11 C -0.16 -3.74 9.82 -39.77 -0.39 -4.13 16 12 C 0.10 2.25 6.67 -83.69 -0.56 1.69 16 13 N -0.75 -13.89 5.69 -59.67 -0.34 -14.23 16 14 C 0.19 3.06 4.68 -5.19 -0.02 3.04 16 15 C -0.12 -1.68 5.26 -104.47 -0.55 -2.23 16 16 C -0.06 -0.74 9.67 -39.60 -0.38 -1.12 16 17 C -0.16 -1.55 10.04 -39.56 -0.40 -1.95 16 18 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 19 C -0.22 -2.15 9.04 -39.43 -0.36 -2.51 16 20 C 0.14 1.82 6.66 -39.22 -0.26 1.56 16 21 O -0.29 -3.94 9.35 -19.43 -0.18 -4.12 16 22 C 0.11 1.05 4.89 36.01 0.18 1.23 16 23 C -0.15 -1.67 5.53 -104.48 -0.58 -2.25 16 24 C -0.05 -0.51 9.86 -39.28 -0.39 -0.90 16 25 C -0.17 -1.81 10.11 -39.44 -0.40 -2.21 16 26 C 0.11 1.23 11.18 -17.54 -0.20 1.04 16 27 N -0.49 -6.41 10.36 -13.25 -0.14 -6.55 16 28 C 0.12 1.48 10.86 -17.55 -0.19 1.29 16 29 C -0.16 -4.02 9.23 -39.77 -0.37 -4.39 16 30 C -0.12 -3.32 8.64 -39.27 -0.34 -3.66 16 31 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 32 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 33 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.38 6.58 8.46 -40.82 -0.35 6.24 16 35 H 0.06 1.04 7.64 -51.93 -0.40 0.64 16 36 H 0.05 0.85 7.79 -51.93 -0.40 0.45 16 37 H 0.13 1.34 8.03 -52.49 -0.42 0.92 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 41 H 0.07 0.56 7.62 -51.93 -0.40 0.16 16 42 H 0.07 0.57 7.61 -51.93 -0.40 0.18 16 43 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 44 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 46 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 47 H 0.09 1.96 6.68 -52.48 -0.35 1.61 16 48 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -32.11 405.90 -12.27 -44.38 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.30 Total: 12.97 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -7.01 Total: -31.78 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.13 Total: -42.23 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.18 Total: -4.12 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.11 -12.27 -44.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095352965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.743 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds