Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47078 * 270.00732 * 3 2 1 5 5 H 1.48504 * 109.46830 * 30.00715 * 3 2 1 6 6 H 1.48501 * 109.46885 * 150.00330 * 3 2 1 7 7 C 1.39866 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99739 * 197.95930 * 7 2 1 9 9 C 1.41133 * 119.99916 * 17.95871 * 7 2 1 10 10 C 1.40893 * 120.15364 * 204.83980 * 9 7 2 11 11 C 1.36340 * 119.83593 * 180.25652 * 10 9 7 12 12 C 1.39570 * 120.15779 * 359.49782 * 11 10 9 13 13 N 1.38859 * 119.83888 * 180.25511 * 12 11 10 14 14 C 1.46498 * 119.99754 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47016 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.02625 * 259.72586 * 15 14 13 17 17 C 1.38248 * 120.05338 * 179.74800 * 16 15 14 18 18 C 1.38281 * 120.11132 * 0.54896 * 17 16 15 19 19 C 1.38125 * 120.05871 * 359.69761 * 18 17 16 20 20 C 1.38716 * 120.03175 * 79.99689 * 15 14 13 21 21 O 1.35902 * 120.05332 * 359.95656 * 20 15 14 22 22 C 1.42901 * 116.99938 * 179.97438 * 21 20 15 23 23 C 1.50701 * 109.46880 * 179.97438 * 22 21 20 24 24 C 1.38671 * 120.41930 * 269.71800 * 23 22 21 25 25 C 1.38626 * 118.41952 * 179.78427 * 24 23 22 26 26 C 1.38234 * 119.15830 * 0.51681 * 25 24 23 27 27 N 1.31855 * 120.76416 * 359.72450 * 26 25 24 28 28 C 1.31882 * 121.72333 * 0.02562 * 27 26 25 29 29 C 1.39559 * 120.31699 * 0.28309 * 12 11 10 30 30 C 1.36338 * 120.16450 * 359.97407 * 29 12 11 31 31 H 0.97001 * 120.00040 * 359.97438 * 1 2 3 32 32 H 1.07995 * 120.07970 * 0.02562 * 10 9 7 33 33 H 1.07992 * 119.91978 * 179.78346 * 11 10 9 34 34 H 0.97005 * 120.00059 * 0.02562 * 13 12 11 35 35 H 1.09002 * 109.47327 * 299.99529 * 14 13 12 36 36 H 1.08997 * 109.47201 * 60.00469 * 14 13 12 37 37 H 1.07997 * 119.97075 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.94083 * 180.29456 * 17 16 15 39 39 H 1.08002 * 119.97372 * 179.72697 * 18 17 16 40 40 H 1.07999 * 120.03182 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47059 * 300.00089 * 22 21 20 42 42 H 1.08998 * 109.46915 * 60.00075 * 22 21 20 43 43 H 1.08001 * 120.78877 * 0.03472 * 24 23 22 44 44 H 1.07998 * 120.42041 * 180.22510 * 25 24 23 45 45 H 1.07999 * 119.61594 * 179.74845 * 26 25 24 46 46 H 1.08004 * 119.61377 * 179.97438 * 28 27 26 47 47 H 1.08011 * 119.91970 * 179.97438 * 29 12 11 48 48 H 1.08002 * 120.08601 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 2.4904 2.0465 -1.4000 5 1 1.4405 2.6526 0.7002 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 -0.0005 8 1 3.0489 -1.2342 0.2878 9 6 1.3543 -2.4036 -0.3779 10 6 1.8237 -3.6469 0.0898 11 6 1.1900 -4.7951 -0.2831 12 6 0.0726 -4.7400 -1.1175 13 7 -0.5709 -5.9131 -1.4889 14 6 -1.7438 -5.8594 -2.3650 15 6 -2.2499 -7.2570 -2.6131 16 6 -1.9380 -7.9062 -3.7922 17 6 -2.3976 -9.1903 -4.0182 18 6 -3.1799 -9.8239 -3.0702 19 6 -3.4989 -9.1774 -1.8920 20 6 -3.0341 -7.8907 -1.6604 21 8 -3.3462 -7.2525 -0.5018 22 6 -4.1580 -7.9656 0.4333 23 6 -4.3978 -7.1064 1.6479 24 6 -3.5294 -7.1592 2.7278 25 6 -3.7869 -6.3476 3.8217 26 6 -4.8989 -5.5266 3.8044 27 7 -5.7060 -5.5062 2.7619 28 6 -5.4893 -6.2608 1.7023 29 6 -0.4007 -3.5116 -1.5809 30 6 0.2261 -2.3558 -1.2204 31 1 -0.4850 0.8401 0.0004 32 1 2.6856 -3.6906 0.7391 33 1 1.5508 -5.7491 0.0718 34 1 -0.2439 -6.7682 -1.1681 35 1 -2.5266 -5.2692 -1.8886 36 1 -1.4679 -5.3988 -3.3136 37 1 -1.3308 -7.4118 -4.5360 38 1 -2.1487 -9.6978 -4.9384 39 1 -3.5415 -10.8254 -3.2509 40 1 -4.1095 -9.6728 -1.1517 41 1 -5.1126 -8.2148 -0.0302 42 1 -3.6489 -8.8820 0.7317 43 1 -2.6706 -7.8139 2.7150 44 1 -3.1297 -6.3601 4.6786 45 1 -5.1088 -4.8944 4.6544 46 1 -6.1729 -6.2173 0.8672 47 1 -1.2658 -3.4765 -2.2267 48 1 -0.1415 -1.4058 -1.5795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095352965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = 34.932649 kcal Electronic energy + Delta-G solvation = -30369.068552 eV Core-core repulsion = 26353.100682 eV Total energy + Delta-G solvation = -4015.967870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.158 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.53716 -40.89468 -39.70461 -38.46229 -36.73002 -34.94788 -34.11706 -32.86666 -32.53198 -31.35449 -30.89666 -30.13090 -27.88797 -27.18794 -25.54405 -24.61933 -23.92040 -23.18812 -22.58172 -22.24151 -21.55496 -19.15245 -19.08059 -18.18781 -17.94350 -17.66304 -17.25492 -16.83611 -16.72952 -16.21851 -16.10695 -15.95124 -15.59669 -15.32474 -14.87997 -14.76774 -14.59936 -14.47261 -14.29434 -14.07084 -14.01989 -13.71473 -13.63279 -13.43226 -13.40837 -13.02284 -12.75833 -12.62895 -12.59764 -12.33033 -12.24313 -11.97000 -11.73409 -11.56558 -11.20198 -11.07287 -10.88045 -10.50469 -10.30350 -10.12203 -9.87627 -9.41079 -9.13124 -8.54599 -8.15333 -6.00490 -0.04545 0.25424 0.31317 0.49802 1.10762 1.18244 1.39369 1.52402 1.59072 2.23427 2.27235 2.68399 2.84626 2.92091 3.18799 3.43354 3.65427 3.74576 3.75927 3.84810 3.90468 3.97346 4.00120 4.12535 4.22998 4.38161 4.39800 4.42952 4.45399 4.50211 4.60034 4.60810 4.70461 4.76347 4.85322 5.02073 5.06709 5.08810 5.13620 5.18370 5.27569 5.38161 5.45722 5.51870 5.60924 5.66989 5.67617 5.80168 5.88047 5.96047 6.18836 6.38555 6.46043 6.67225 6.86795 6.91922 7.08573 7.13894 7.31622 8.48870 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.007630 B = 0.002894 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3669.041065 B = 9671.808944 C =12412.495411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.069 0.931 9 C 0.035 3.965 10 C -0.192 4.192 11 C -0.166 4.166 12 C 0.118 3.882 13 N -0.739 5.739 14 C 0.193 3.807 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.160 4.160 18 C -0.073 4.073 19 C -0.213 4.213 20 C 0.132 3.868 21 O -0.324 6.324 22 C 0.106 3.894 23 C -0.156 4.156 24 C -0.059 4.059 25 C -0.176 4.176 26 C 0.092 3.908 27 N -0.517 5.517 28 C 0.106 3.894 29 C -0.177 4.177 30 C -0.142 4.142 31 H 0.281 0.719 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.392 0.608 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.177 0.823 46 H 0.167 0.833 47 H 0.098 0.902 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -21.628 -0.907 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.032 3.968 10 C -0.212 4.212 11 C -0.188 4.188 12 C 0.018 3.982 13 N -0.373 5.373 14 C 0.069 3.931 15 C -0.151 4.151 16 C -0.090 4.090 17 C -0.178 4.178 18 C -0.091 4.091 19 C -0.231 4.231 20 C 0.086 3.914 21 O -0.238 6.238 22 C 0.032 3.968 23 C -0.158 4.158 24 C -0.085 4.085 25 C -0.196 4.196 26 C -0.065 4.065 27 N -0.226 5.226 28 C -0.051 4.051 29 C -0.200 4.200 30 C -0.162 4.162 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.133 0.867 34 H 0.226 0.774 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.170 0.830 44 H 0.180 0.820 45 H 0.194 0.806 46 H 0.184 0.816 47 H 0.116 0.884 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.028 -20.643 -0.905 23.909 hybrid contribution 1.022 0.315 0.324 1.118 sum -11.006 -20.328 -0.582 23.124 Atomic orbital electron populations 1.69942 1.08848 1.29706 1.38719 1.26639 0.95417 1.04179 0.91852 0.85280 0.79051 0.76492 0.79270 1.18942 1.19627 1.18301 1.19587 0.98023 0.92720 1.43331 0.91306 1.17794 0.93549 0.93110 0.92314 1.20748 1.03068 0.92747 1.04652 1.20058 0.97930 0.97598 1.03198 1.17451 0.94668 0.86422 0.99660 1.43842 1.32201 1.04726 1.56548 1.19630 0.87218 0.93053 0.93246 1.19291 1.03293 0.96798 0.95725 1.21132 0.97560 0.95200 0.95097 1.21364 1.00392 0.94786 1.01295 1.21360 0.95259 1.00456 0.91984 1.21501 1.06222 0.94051 1.01348 1.19018 0.94738 0.91923 0.85719 1.86254 1.67196 1.43819 1.26531 1.21629 0.95871 0.93472 0.85876 1.20660 0.97597 1.01149 0.96366 1.21876 0.97433 0.96946 0.92273 1.22509 0.99170 0.97267 1.00637 1.23316 0.90614 0.96091 0.96435 1.67732 1.31576 1.21532 1.01715 1.22977 0.95983 0.90211 0.95916 1.20203 1.01949 0.92075 1.05734 1.20844 0.98952 0.96499 0.99911 0.90869 0.88374 0.86651 0.77384 0.94796 0.93020 0.84764 0.83414 0.82701 0.83156 0.88863 0.88995 0.82974 0.82010 0.80560 0.81632 0.88400 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.83 10.96 21.82 0.24 -47.59 16 2 C 0.03 1.67 5.13 85.22 0.44 2.10 16 3 Si 0.98 41.26 29.60 68.60 2.03 43.30 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.51 -29.17 9.03 23.38 0.21 -28.96 16 8 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 9 C 0.04 2.03 5.57 -21.27 -0.12 1.91 16 10 C -0.19 -9.92 9.74 22.48 0.22 -9.70 16 11 C -0.17 -7.58 9.82 22.15 0.22 -7.36 16 12 C 0.12 5.31 6.67 38.67 0.26 5.56 16 13 N -0.74 -26.73 5.69 -342.71 -1.95 -28.68 16 14 C 0.19 6.28 4.68 85.63 0.40 6.68 16 15 C -0.15 -3.85 5.26 -19.77 -0.10 -3.95 16 16 C -0.07 -1.48 9.67 22.26 0.22 -1.27 16 17 C -0.16 -2.51 10.04 22.28 0.22 -2.28 16 18 C -0.07 -1.00 10.04 22.25 0.22 -0.78 16 19 C -0.21 -3.50 9.04 22.37 0.20 -3.30 16 20 C 0.13 3.07 6.66 22.51 0.15 3.22 16 21 O -0.32 -8.33 9.35 -92.45 -0.86 -9.19 16 22 C 0.11 1.88 4.89 71.24 0.35 2.23 16 23 C -0.16 -3.38 5.53 -19.78 -0.11 -3.49 16 24 C -0.06 -1.23 9.86 22.47 0.22 -1.01 16 25 C -0.18 -3.56 10.11 22.36 0.23 -3.34 16 26 C 0.09 2.08 11.18 84.69 0.95 3.03 16 27 N -0.52 -13.88 10.36 -195.84 -2.03 -15.91 16 28 C 0.11 2.54 10.86 84.67 0.92 3.46 16 29 C -0.18 -8.88 9.23 22.15 0.20 -8.68 16 30 C -0.14 -8.03 8.64 22.47 0.19 -7.84 16 31 H 0.28 14.55 8.30 -92.71 -0.77 13.78 16 32 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 34 H 0.39 12.85 8.46 -92.70 -0.78 12.07 16 35 H 0.03 1.26 7.64 -2.39 -0.02 1.25 16 36 H 0.05 1.68 7.79 -2.39 -0.02 1.66 16 37 H 0.13 2.57 8.03 -2.91 -0.02 2.55 16 38 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 41 H 0.09 1.21 7.62 -2.39 -0.02 1.19 16 42 H 0.09 1.21 7.61 -2.39 -0.02 1.19 16 43 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 47 H 0.10 4.56 6.68 -2.90 -0.02 4.55 16 48 H 0.10 5.79 6.16 -2.91 -0.02 5.78 16 Total: -1.00 -72.73 405.90 3.12 -69.61 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: 0.20 Total: 42.23 kcal Atomic # 6 Polarization: -59.26 SS G_CDS: 5.49 Total: -53.77 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -3.74 Total: -92.18 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.86 Total: -9.19 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.30 kcal Total: -72.73 3.12 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095352965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.547 kcal (2) G-P(sol) polarization free energy of solvation -72.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds