Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37102 * 119.99962 * 2 1 4 4 H 1.08004 * 120.00001 * 204.39293 * 3 2 1 5 5 C 1.38951 * 120.00015 * 24.39934 * 3 2 1 6 6 N 1.31412 * 119.99981 * 12.63226 * 5 3 2 7 7 Si 1.86796 * 119.99902 * 192.64098 * 5 3 2 8 8 H 1.48498 * 109.47740 * 89.99863 * 7 5 3 9 9 H 1.48500 * 109.47251 * 209.99631 * 7 5 3 10 10 H 1.48497 * 109.47255 * 329.99603 * 7 5 3 11 11 C 1.34770 * 119.99997 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00124 * 180.02562 * 11 2 1 13 13 C 1.50694 * 120.00234 * 359.97438 * 11 2 1 14 14 O 1.42901 * 109.47464 * 179.97438 * 13 11 2 15 15 C 1.35997 * 117.00047 * 179.97438 * 14 13 11 16 16 C 1.38559 * 120.07355 * 359.97438 * 15 14 13 17 17 C 1.38244 * 120.00263 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.14244 * 0.02562 * 17 16 15 19 19 C 1.38239 * 120.14641 * 0.02562 * 18 17 16 20 20 C 1.38568 * 120.00115 * 359.97438 * 19 18 17 21 21 O 1.36002 * 120.07160 * 179.97438 * 20 19 18 22 22 C 1.42899 * 116.99966 * 0.02562 * 21 20 19 23 23 C 1.50698 * 109.46793 * 180.02562 * 22 21 20 24 24 C 1.38252 * 119.96869 * 269.72514 * 23 22 21 25 25 C 1.38204 * 120.01915 * 179.72560 * 24 23 22 26 26 C 1.38456 * 119.97661 * 0.57173 * 25 24 23 27 27 F 1.35099 * 120.02791 * 179.68497 * 26 25 24 28 28 C 1.38465 * 119.94960 * 359.69823 * 26 25 24 29 29 C 1.38196 * 119.97295 * 0.02562 * 28 26 25 30 30 H 1.08992 * 109.46927 * 265.86465 * 1 2 3 31 31 H 1.09003 * 109.47020 * 25.86356 * 1 2 3 32 32 H 1.08991 * 109.47016 * 145.86085 * 1 2 3 33 33 H 0.97002 * 120.00048 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47281 * 60.00199 * 13 11 2 35 35 H 1.09003 * 109.47291 * 300.00434 * 13 11 2 36 36 H 1.07998 * 120.00415 * 0.03917 * 16 15 14 37 37 H 1.07994 * 119.93033 * 180.28082 * 17 16 15 38 38 H 1.08002 * 119.92869 * 179.97438 * 18 17 16 39 39 H 1.08003 * 120.00277 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47140 * 299.99524 * 22 21 20 41 41 H 1.09000 * 109.47172 * 60.00098 * 22 21 20 42 42 H 1.07997 * 119.99171 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.00905 * 180.25148 * 25 24 23 44 44 H 1.07998 * 120.01505 * 179.97438 * 28 26 25 45 45 H 1.07997 * 119.98911 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3370 0.4971 6 7 0.4346 2.2491 1.1882 7 14 2.3237 4.0073 0.1828 8 1 1.7870 4.5721 -1.0813 9 1 2.0035 4.9213 1.3085 10 1 3.7968 3.8565 0.0713 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4722 -0.0005 14 8 2.3140 -3.5584 -0.0017 15 6 1.7942 -4.8151 -0.0013 16 6 0.4208 -4.9984 0.0007 17 6 -0.1060 -6.2765 0.0016 18 6 0.7348 -7.3740 0.0010 19 6 2.1059 -7.1981 0.0001 20 6 2.6405 -5.9197 -0.0008 21 8 3.9892 -5.7450 -0.0013 22 6 4.7962 -6.9243 -0.0013 23 6 6.2524 -6.5365 -0.0011 24 6 6.9213 -6.3643 -1.1987 25 6 8.2553 -6.0031 -1.1999 26 6 8.9249 -5.8253 -0.0011 27 9 10.2306 -5.4785 -0.0010 28 6 8.2553 -6.0036 1.1977 29 6 6.9199 -6.3592 1.1964 30 1 -0.3633 -0.0741 1.0249 31 1 -0.3633 0.9248 -0.4483 32 1 -0.3633 -0.8505 -0.5767 33 1 0.0143 3.0517 1.5349 34 1 0.7584 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8897 36 1 -0.2382 -4.1428 0.0013 37 1 -1.1767 -6.4180 -0.0014 38 1 0.3195 -8.3710 0.0022 39 1 2.7606 -8.0571 -0.0008 40 1 4.5776 -7.5141 0.8889 41 1 4.5770 -7.5145 -0.8911 42 1 6.4002 -6.5081 -2.1337 43 1 8.7766 -5.8646 -2.1355 44 1 8.7767 -5.8656 2.1334 45 1 6.3975 -6.4987 2.1313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095399348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = -82.475144 kcal Electronic energy + Delta-G solvation = -30614.573631 eV Core-core repulsion = 26092.338169 eV Total energy + Delta-G solvation = -4522.235462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.08841 -40.55693 -39.47973 -38.67825 -37.70684 -36.62040 -34.63090 -32.16148 -31.71434 -31.39194 -30.30090 -29.77496 -27.89023 -26.45480 -26.11179 -24.26672 -23.32190 -22.62674 -22.23020 -21.34964 -19.15312 -18.68341 -17.91473 -17.24141 -16.88356 -16.81172 -16.52922 -15.97743 -15.87143 -15.77064 -15.37502 -15.22512 -14.80449 -14.66764 -14.58486 -14.24374 -13.99022 -13.83248 -13.73557 -13.37289 -13.20127 -12.77665 -12.48283 -12.47303 -12.11285 -11.90411 -11.71999 -11.48323 -11.33084 -11.31063 -11.20291 -11.09352 -11.00925 -10.89137 -10.74446 -10.35815 -10.27996 -9.33618 -9.04456 -8.90461 -8.75353 -8.40720 -7.72426 -7.71387 -6.35972 -3.92563 0.78206 1.00899 1.27241 1.46370 2.98351 3.15502 3.21654 3.26309 3.36572 3.63472 3.73158 3.81245 4.02922 4.16122 4.41138 4.41911 4.65363 4.75951 4.81297 4.83386 4.91158 4.99473 5.04590 5.07238 5.13552 5.27063 5.29319 5.41594 5.49974 5.60339 5.64973 5.65284 5.70351 5.76243 5.87499 5.96056 6.16458 6.21846 6.22569 6.25516 6.46645 6.62258 6.67241 6.76289 7.11541 7.16795 7.54546 7.71835 8.10506 8.45331 9.14818 9.34710 9.91285 10.69286 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.002699 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.110714 B =10371.828181 C =13747.792198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.443 5.443 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.449 3.551 12 O -0.563 6.563 13 C 0.050 3.950 14 O -0.274 6.274 15 C 0.113 3.887 16 C -0.179 4.179 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.176 4.176 20 C 0.097 3.903 21 O -0.291 6.291 22 C 0.102 3.898 23 C -0.104 4.104 24 C -0.063 4.063 25 C -0.157 4.157 26 C 0.107 3.893 27 F -0.139 7.139 28 C -0.156 4.156 29 C -0.063 4.063 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -22.075 -2.348 22.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.165 5.165 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.755 3.245 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.235 3.765 12 O -0.446 6.446 13 C -0.028 4.028 14 O -0.186 6.186 15 C 0.066 3.934 16 C -0.198 4.198 17 C -0.133 4.133 18 C -0.146 4.146 19 C -0.194 4.194 20 C 0.052 3.948 21 O -0.205 6.205 22 C 0.026 3.974 23 C -0.104 4.104 24 C -0.082 4.082 25 C -0.175 4.175 26 C 0.087 3.913 27 F -0.118 7.118 28 C -0.175 4.175 29 C -0.081 4.081 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.153 0.847 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.613 -21.656 -2.251 22.070 hybrid contribution -0.041 0.824 0.006 0.825 sum 3.572 -20.832 -2.245 21.255 Atomic orbital electron populations 1.21546 0.81149 1.00164 1.00733 1.43462 1.05448 1.04183 1.63362 1.19677 1.00831 0.83671 1.39111 0.88249 1.25359 0.96664 1.00197 0.94987 1.69986 1.19217 1.29736 1.33236 0.85882 0.79753 0.81015 0.77839 1.20304 1.20895 1.19259 1.19521 0.88180 0.83914 0.84836 1.90581 1.13500 1.86507 1.53969 1.22634 0.91974 0.86338 1.01897 1.86327 1.34050 1.10517 1.87661 1.18474 0.90799 0.84418 0.99732 1.21182 0.92814 0.99079 1.06714 1.20839 0.99793 0.91652 1.01029 1.20769 0.92494 0.98826 1.02507 1.21001 0.96592 0.94590 1.07265 1.18235 0.82618 0.91566 1.02415 1.86370 1.13355 1.31904 1.88864 1.21522 0.86738 0.87042 1.02051 1.19531 0.94116 1.03118 0.93623 1.20945 0.93270 0.95848 0.98097 1.21141 0.95575 1.03499 0.97322 1.17789 0.78576 1.00114 0.94793 1.91507 1.33296 1.89543 1.97450 1.21147 0.95546 1.03485 0.97337 1.20948 0.93256 0.95789 0.98130 0.92743 0.90284 0.95768 0.92165 0.90687 0.90349 0.84579 0.85726 0.85886 0.85081 0.91106 0.91108 0.84679 0.84417 0.84401 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.34 8.44 59.85 0.51 2.85 16 2 N -0.44 -11.49 3.01 -122.20 -0.37 -11.86 16 3 C -0.31 -8.61 9.24 -14.93 -0.14 -8.75 16 4 H 0.10 2.95 7.45 -52.48 -0.39 2.56 16 5 C 0.03 0.82 5.04 -17.47 -0.09 0.74 16 6 N -0.88 -23.37 10.83 55.50 0.60 -22.77 16 7 Si 0.93 20.81 29.57 -169.99 -5.03 15.79 16 8 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.45 11.47 7.70 -10.99 -0.08 11.38 16 12 O -0.56 -16.83 16.21 -14.37 -0.23 -17.06 16 13 C 0.05 0.99 3.83 36.00 0.14 1.12 16 14 O -0.27 -5.69 9.45 -47.36 -0.45 -6.14 16 15 C 0.11 1.88 6.70 -39.12 -0.26 1.62 16 16 C -0.18 -2.42 9.04 -39.46 -0.36 -2.77 16 17 C -0.11 -1.26 10.04 -39.57 -0.40 -1.66 16 18 C -0.13 -1.30 10.04 -39.57 -0.40 -1.70 16 19 C -0.18 -1.97 9.04 -39.46 -0.36 -2.32 16 20 C 0.10 1.45 6.70 -39.12 -0.26 1.19 16 21 O -0.29 -4.54 9.91 -34.25 -0.34 -4.88 16 22 C 0.10 1.06 4.87 36.00 0.18 1.24 16 23 C -0.10 -1.14 5.51 -104.61 -0.58 -1.72 16 24 C -0.06 -0.66 9.70 -39.59 -0.38 -1.05 16 25 C -0.16 -1.65 10.03 -39.51 -0.40 -2.04 16 26 C 0.11 1.22 7.30 -39.42 -0.29 0.93 16 27 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 28 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 29 C -0.06 -0.67 9.70 -39.59 -0.38 -1.05 16 30 H 0.05 1.20 7.83 -51.93 -0.41 0.79 16 31 H 0.08 1.81 6.80 -51.93 -0.35 1.46 16 32 H 0.02 0.42 6.61 -51.93 -0.34 0.07 16 33 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.08 1.25 6.93 -51.93 -0.36 0.89 16 35 H 0.08 1.37 7.63 -51.93 -0.40 0.97 16 36 H 0.14 1.65 6.30 -52.49 -0.33 1.32 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.13 1.08 6.30 -52.48 -0.33 0.75 16 40 H 0.07 0.59 7.61 -51.93 -0.39 0.20 16 41 H 0.07 0.58 7.61 -51.93 -0.39 0.19 16 42 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -35.00 388.22 -9.25 -44.25 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.37 Total: 2.50 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.95 Total: -4.04 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.23 Total: -34.63 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.02 Total: -28.08 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.00 -9.25 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.226 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds