Wall clock time and date at job start Tue Mar 31 2020 05:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37102 * 119.99962 * 2 1 4 4 H 1.08004 * 120.00001 * 204.39293 * 3 2 1 5 5 C 1.38951 * 120.00015 * 24.39934 * 3 2 1 6 6 N 1.31412 * 119.99981 * 12.63226 * 5 3 2 7 7 Si 1.86796 * 119.99902 * 192.64098 * 5 3 2 8 8 H 1.48498 * 109.47740 * 89.99863 * 7 5 3 9 9 H 1.48500 * 109.47251 * 209.99631 * 7 5 3 10 10 H 1.48497 * 109.47255 * 329.99603 * 7 5 3 11 11 C 1.34770 * 119.99997 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00124 * 180.02562 * 11 2 1 13 13 C 1.50694 * 120.00234 * 359.97438 * 11 2 1 14 14 O 1.42901 * 109.47464 * 179.97438 * 13 11 2 15 15 C 1.35997 * 117.00047 * 179.97438 * 14 13 11 16 16 C 1.38559 * 120.07355 * 359.97438 * 15 14 13 17 17 C 1.38244 * 120.00263 * 180.02562 * 16 15 14 18 18 C 1.38256 * 120.14244 * 0.02562 * 17 16 15 19 19 C 1.38239 * 120.14641 * 0.02562 * 18 17 16 20 20 C 1.38568 * 120.00115 * 359.97438 * 19 18 17 21 21 O 1.36002 * 120.07160 * 179.97438 * 20 19 18 22 22 C 1.42899 * 116.99966 * 0.02562 * 21 20 19 23 23 C 1.50698 * 109.46793 * 180.02562 * 22 21 20 24 24 C 1.38252 * 119.96869 * 269.72514 * 23 22 21 25 25 C 1.38204 * 120.01915 * 179.72560 * 24 23 22 26 26 C 1.38456 * 119.97661 * 0.57173 * 25 24 23 27 27 F 1.35099 * 120.02791 * 179.68497 * 26 25 24 28 28 C 1.38465 * 119.94960 * 359.69823 * 26 25 24 29 29 C 1.38196 * 119.97295 * 0.02562 * 28 26 25 30 30 H 1.08992 * 109.46927 * 265.86465 * 1 2 3 31 31 H 1.09003 * 109.47020 * 25.86356 * 1 2 3 32 32 H 1.08991 * 109.47016 * 145.86085 * 1 2 3 33 33 H 0.97002 * 120.00048 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.47281 * 60.00199 * 13 11 2 35 35 H 1.09003 * 109.47291 * 300.00434 * 13 11 2 36 36 H 1.07998 * 120.00415 * 0.03917 * 16 15 14 37 37 H 1.07994 * 119.93033 * 180.28082 * 17 16 15 38 38 H 1.08002 * 119.92869 * 179.97438 * 18 17 16 39 39 H 1.08003 * 120.00277 * 180.02562 * 19 18 17 40 40 H 1.08997 * 109.47140 * 299.99524 * 22 21 20 41 41 H 1.09000 * 109.47172 * 60.00098 * 22 21 20 42 42 H 1.07997 * 119.99171 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.00905 * 180.25148 * 25 24 23 44 44 H 1.07998 * 120.01505 * 179.97438 * 28 26 25 45 45 H 1.07997 * 119.98911 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2291 -0.3863 5 6 1.5488 2.3370 0.4971 6 7 0.4346 2.2491 1.1882 7 14 2.3237 4.0073 0.1828 8 1 1.7870 4.5721 -1.0813 9 1 2.0035 4.9213 1.3085 10 1 3.7968 3.8565 0.0713 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4722 -0.0005 14 8 2.3140 -3.5584 -0.0017 15 6 1.7942 -4.8151 -0.0013 16 6 0.4208 -4.9984 0.0007 17 6 -0.1060 -6.2765 0.0016 18 6 0.7348 -7.3740 0.0010 19 6 2.1059 -7.1981 0.0001 20 6 2.6405 -5.9197 -0.0008 21 8 3.9892 -5.7450 -0.0013 22 6 4.7962 -6.9243 -0.0013 23 6 6.2524 -6.5365 -0.0011 24 6 6.9213 -6.3643 -1.1987 25 6 8.2553 -6.0031 -1.1999 26 6 8.9249 -5.8253 -0.0011 27 9 10.2306 -5.4785 -0.0010 28 6 8.2553 -6.0036 1.1977 29 6 6.9199 -6.3592 1.1964 30 1 -0.3633 -0.0741 1.0249 31 1 -0.3633 0.9248 -0.4483 32 1 -0.3633 -0.8505 -0.5767 33 1 0.0143 3.0517 1.5349 34 1 0.7584 -2.5298 -0.8903 35 1 0.7590 -2.5302 0.8897 36 1 -0.2382 -4.1428 0.0013 37 1 -1.1767 -6.4180 -0.0014 38 1 0.3195 -8.3710 0.0022 39 1 2.7606 -8.0571 -0.0008 40 1 4.5776 -7.5141 0.8889 41 1 4.5770 -7.5145 -0.8911 42 1 6.4002 -6.5081 -2.1337 43 1 8.7766 -5.8646 -2.1355 44 1 8.7767 -5.8656 2.1334 45 1 6.3975 -6.4987 2.1313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095399348.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:46 Heat of formation + Delta-G solvation = -101.924684 kcal Electronic energy + Delta-G solvation = -30615.417026 eV Core-core repulsion = 26092.338169 eV Total energy + Delta-G solvation = -4523.078857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.137 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.99345 -41.60607 -40.63935 -40.07458 -39.01391 -37.69391 -36.66344 -33.77590 -32.98659 -32.19346 -31.25456 -30.90871 -29.39357 -27.92753 -27.27727 -26.14691 -24.12771 -23.63614 -23.20118 -22.27716 -20.90098 -19.77703 -18.94093 -18.77131 -18.33120 -17.71113 -17.68077 -17.46953 -17.29002 -16.73025 -16.67339 -16.32444 -16.16989 -15.85994 -15.64172 -15.52058 -15.39795 -15.15683 -14.56647 -14.54928 -14.34279 -13.92281 -13.81190 -13.52217 -13.34626 -13.31584 -13.24894 -13.17077 -12.72185 -12.65974 -12.46257 -12.19528 -12.16509 -12.15190 -11.99395 -11.96658 -11.81442 -11.04522 -10.43128 -10.14580 -9.75991 -9.74702 -9.67241 -8.76893 -8.39676 -6.05724 -0.06924 0.19907 0.36376 0.51872 1.35251 1.39679 1.51541 1.87329 1.93858 2.13120 2.34296 2.79983 2.82374 3.02165 3.15499 3.19259 3.61245 3.64782 3.77483 3.88356 3.96535 4.04896 4.07006 4.08181 4.18216 4.18919 4.23153 4.37356 4.48782 4.50368 4.55513 4.59707 4.81055 4.88395 4.89451 4.98271 5.05900 5.14255 5.28160 5.32290 5.40281 5.40621 5.41112 5.59064 5.81162 5.82864 5.99044 6.15696 6.43029 6.69265 7.10322 7.34642 7.92205 8.63581 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.007465 B = 0.002699 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3750.110714 B =10371.828181 C =13747.792198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.454 5.454 3 C -0.349 4.349 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.891 5.891 7 Si 0.991 3.009 8 H -0.261 1.261 9 H -0.270 1.270 10 H -0.279 1.279 11 C 0.432 3.568 12 O -0.624 6.624 13 C 0.068 3.932 14 O -0.317 6.317 15 C 0.063 3.937 16 C -0.181 4.181 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.169 4.169 20 C 0.077 3.923 21 O -0.331 6.331 22 C 0.098 3.902 23 C -0.117 4.117 24 C -0.072 4.072 25 C -0.163 4.163 26 C 0.086 3.914 27 F -0.147 7.147 28 C -0.163 4.163 29 C -0.073 4.073 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.276 0.724 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 -24.084 -2.503 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.174 5.174 3 C -0.477 4.477 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.529 5.529 7 Si 0.814 3.186 8 H -0.186 1.186 9 H -0.195 1.195 10 H -0.205 1.205 11 C 0.221 3.779 12 O -0.510 6.510 13 C -0.010 4.010 14 O -0.230 6.230 15 C 0.018 3.982 16 C -0.200 4.200 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.187 4.187 20 C 0.031 3.969 21 O -0.246 6.246 22 C 0.024 3.976 23 C -0.117 4.117 24 C -0.090 4.090 25 C -0.181 4.181 26 C 0.066 3.934 27 F -0.125 7.125 28 C -0.182 4.182 29 C -0.091 4.091 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.170 0.830 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.058 -23.687 -2.402 23.832 hybrid contribution 0.685 1.322 0.082 1.491 sum 1.743 -22.365 -2.320 22.553 Atomic orbital electron populations 1.21588 0.78676 1.01487 1.01153 1.43739 1.07064 1.03898 1.62705 1.19612 1.00618 0.85819 1.41662 0.91397 1.26092 0.97012 1.02879 0.93977 1.70039 1.19437 1.31051 1.32397 0.84973 0.78166 0.76770 0.78664 1.18584 1.19489 1.20452 1.20566 0.87974 0.85869 0.83470 1.90523 1.16292 1.87728 1.56488 1.22358 0.90973 0.83485 1.04152 1.86239 1.35381 1.12228 1.89200 1.18962 0.92681 0.83053 1.03535 1.21406 0.91553 1.00822 1.06187 1.21267 1.01644 0.90681 0.99670 1.21306 0.91914 1.00463 0.99557 1.21390 0.97756 0.93886 1.05704 1.18610 0.82432 0.92539 1.03278 1.86307 1.14270 1.34734 1.89267 1.21787 0.85575 0.86088 1.04190 1.19812 0.94799 1.03143 0.93957 1.21222 0.93332 0.95587 0.98824 1.21394 0.95848 1.03089 0.97789 1.18058 0.78540 1.01134 0.95627 1.91481 1.33767 1.89765 1.97522 1.21389 0.95818 1.03159 0.97815 1.21215 0.93343 0.95649 0.98855 0.93179 0.91749 0.91023 0.91372 0.87673 0.88249 0.83706 0.82531 0.82018 0.82003 0.88927 0.88797 0.83032 0.82847 0.82941 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.87 8.44 127.77 1.08 5.95 16 2 N -0.45 -24.18 3.01 -658.91 -1.98 -26.16 16 3 C -0.35 -20.51 9.24 84.04 0.78 -19.73 16 4 H 0.07 4.31 7.45 -2.91 -0.02 4.29 16 5 C 0.00 0.16 5.04 84.93 0.43 0.59 16 6 N -0.89 -46.95 10.83 21.66 0.23 -46.72 16 7 Si 0.99 42.92 29.57 68.60 2.03 44.95 16 8 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 C 0.43 22.98 7.70 87.66 0.68 23.66 16 12 O -0.62 -39.72 16.21 15.95 0.26 -39.46 16 13 C 0.07 2.70 3.83 71.23 0.27 2.97 16 14 O -0.32 -13.62 9.45 -67.11 -0.63 -14.26 16 15 C 0.06 2.09 6.70 22.57 0.15 2.24 16 16 C -0.18 -4.52 9.04 22.35 0.20 -4.32 16 17 C -0.11 -2.06 10.04 22.28 0.22 -1.84 16 18 C -0.11 -1.81 10.04 22.27 0.22 -1.59 16 19 C -0.17 -3.24 9.04 22.35 0.20 -3.04 16 20 C 0.08 2.23 6.70 22.57 0.15 2.38 16 21 O -0.33 -10.41 9.91 -79.71 -0.79 -11.20 16 22 C 0.10 1.93 4.87 71.24 0.35 2.28 16 23 C -0.12 -2.56 5.51 -19.86 -0.11 -2.67 16 24 C -0.07 -1.50 9.70 22.26 0.22 -1.28 16 25 C -0.16 -3.48 10.03 22.31 0.22 -3.25 16 26 C 0.09 2.02 7.30 22.38 0.16 2.18 16 27 F -0.15 -3.64 17.27 44.97 0.78 -2.86 16 28 C -0.16 -3.53 10.03 22.31 0.22 -3.31 16 29 C -0.07 -1.54 9.70 22.26 0.22 -1.32 16 30 H 0.05 2.17 7.83 -2.39 -0.02 2.15 16 31 H 0.06 2.92 6.80 -2.39 -0.02 2.91 16 32 H 0.07 2.35 6.61 -2.39 -0.02 2.33 16 33 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.11 3.39 6.93 -2.38 -0.02 3.37 16 35 H 0.10 3.40 7.63 -2.39 -0.02 3.38 16 36 H 0.15 3.17 6.30 -2.91 -0.02 3.16 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.16 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.16 1.98 6.30 -2.91 -0.02 1.96 16 40 H 0.09 1.36 7.61 -2.39 -0.02 1.34 16 41 H 0.09 1.35 7.61 -2.39 -0.02 1.33 16 42 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 45 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -82.13 388.22 6.59 -75.55 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 1.03 Total: 20.28 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.67 Total: -0.11 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.75 Total: -72.88 kcal Atomic # 8 Polarization: -63.75 SS G_CDS: -1.17 Total: -64.92 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.86 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -82.13 6.59 -75.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095399348.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.377 kcal (2) G-P(sol) polarization free energy of solvation -82.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds