Wall clock time and date at job start Tue Mar 31 2020 06:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.52992 * 109.47195 * 120.00153 * 2 1 3 5 5 C 1.50700 * 109.47257 * 299.99960 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47163 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47290 * 299.99897 * 9 7 5 13 13 C 1.53005 * 109.47219 * 240.00443 * 2 1 3 14 14 N 1.46895 * 109.47064 * 59.99618 * 13 2 1 15 15 C 1.46899 * 111.00175 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47586 * 180.02562 * 15 14 13 17 17 N 1.30837 * 126.46657 * 269.68784 * 16 15 14 18 18 N 1.28905 * 109.73969 * 179.79111 * 17 16 15 19 19 C 1.29835 * 109.48136 * 0.41894 * 18 17 16 20 20 N 1.34695 * 126.46348 * 89.99519 * 16 15 14 21 21 C 1.46254 * 128.84729 * 0.13542 * 20 16 15 22 22 C 1.53325 * 108.73271 * 162.90330 * 21 20 16 23 23 H 1.09003 * 109.44601 * 290.27680 * 22 21 20 24 24 C 1.52992 * 109.45550 * 170.32410 * 22 21 20 25 25 F 1.39908 * 109.47446 * 59.99846 * 24 22 21 26 26 F 1.39902 * 109.47347 * 179.97438 * 24 22 21 27 27 F 1.39903 * 109.47182 * 300.00314 * 24 22 21 28 28 C 1.53139 * 109.57731 * 50.28856 * 22 21 20 29 29 C 1.50796 * 128.52789 * 179.85720 * 19 18 17 30 30 H 1.08996 * 109.46790 * 299.99702 * 1 2 3 31 31 H 1.08998 * 109.47453 * 59.99752 * 1 2 3 32 32 H 1.08997 * 109.46624 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47440 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47697 * 300.00093 * 3 2 1 35 35 H 1.09005 * 109.47269 * 60.00262 * 3 2 1 36 36 H 1.09004 * 109.47330 * 179.97438 * 4 2 1 37 37 H 1.08997 * 109.47279 * 60.00470 * 4 2 1 38 38 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 39 39 H 1.08999 * 109.46783 * 179.97438 * 13 2 1 40 40 H 1.09000 * 109.46608 * 299.99989 * 13 2 1 41 41 H 1.00899 * 111.00155 * 56.04363 * 14 13 2 42 42 H 1.09003 * 109.46886 * 300.00039 * 15 14 13 43 43 H 1.09004 * 109.47036 * 59.99703 * 15 14 13 44 44 H 1.08998 * 109.59694 * 282.67651 * 21 20 16 45 45 H 1.09002 * 109.59860 * 43.12698 * 21 20 16 46 46 H 1.08994 * 109.50133 * 50.51653 * 28 22 21 47 47 H 1.09003 * 109.49817 * 170.58853 * 28 22 21 48 48 H 1.09006 * 109.72960 * 44.41556 * 29 19 18 49 49 H 1.09000 * 109.77242 * 283.76024 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5377 -0.0109 2.4797 6 1 0.9172 0.8674 2.3806 7 6 1.8713 -0.4817 3.7320 8 7 2.6233 -1.5539 3.8525 9 14 1.2481 0.3984 5.2572 10 1 -0.2369 0.3973 5.2573 11 1 1.7432 -0.3016 6.4696 12 1 1.7420 1.7989 5.2572 13 6 2.0401 -0.7212 -1.2493 14 7 1.5504 -0.0287 -2.4487 15 6 2.0209 -0.6950 -3.6704 16 6 1.5002 0.0423 -4.8771 17 7 0.3747 -0.1878 -5.5033 18 7 0.2483 0.6343 -6.4880 19 6 1.2856 1.4136 -6.5374 20 7 2.1086 1.0589 -5.5181 21 6 3.3935 1.6918 -5.2227 22 6 3.8453 2.4869 -6.4533 23 1 4.1177 1.7964 -7.2516 24 6 5.0569 3.3466 -6.0879 25 9 6.1012 2.5216 -5.6564 26 9 5.4699 4.0719 -7.2108 27 9 4.7082 4.2322 -5.0625 28 6 2.7035 3.3902 -6.9282 29 6 1.5813 2.5232 -7.5148 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 -0.7217 1.2489 37 1 1.6768 -1.7489 1.2491 38 1 2.8583 -1.8849 4.7336 39 1 3.1301 -0.7207 -1.2495 40 1 1.6767 -1.7488 -1.2493 41 1 1.8197 0.9437 -2.4401 42 1 3.1108 -0.6951 -3.6874 43 1 1.6571 -1.7224 -3.6870 44 1 3.2825 2.3653 -4.3729 45 1 4.1335 0.9258 -4.9905 46 1 2.3178 3.9628 -6.0849 47 1 3.0738 4.0731 -7.6929 48 1 0.6879 3.1295 -7.6645 49 1 1.9024 2.1001 -8.4667 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095402037.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:27 Heat of formation + Delta-G solvation = -92.729032 kcal Electronic energy + Delta-G solvation = -33349.129177 eV Core-core repulsion = 28510.752572 eV Total energy + Delta-G solvation = -4838.376604 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.77964 -48.25579 -48.22524 -43.61667 -38.18325 -37.84781 -35.16463 -33.75569 -32.35039 -32.05480 -29.98551 -27.29835 -26.84195 -26.54963 -26.35046 -24.76339 -24.19494 -22.92985 -22.26769 -21.44857 -20.44491 -19.08181 -18.95161 -18.25663 -18.02960 -17.04427 -16.77179 -16.30134 -15.99966 -15.49747 -15.36369 -14.92466 -14.87248 -14.77652 -14.64754 -14.61066 -14.47274 -14.35549 -14.33855 -14.15870 -13.68692 -13.34123 -13.05533 -13.02562 -12.62748 -12.39452 -12.19391 -12.12533 -12.00866 -11.92227 -11.78419 -11.57682 -11.01962 -10.92401 -10.80749 -10.57382 -10.52437 -10.48989 -10.32623 -10.17864 -9.73747 -9.35609 -9.05147 -8.88725 -8.33504 -8.32102 -5.98207 -3.98423 1.46749 1.70136 2.18731 2.63941 2.96499 3.02226 3.18153 3.33711 3.38552 3.40818 3.66851 3.74953 3.88666 3.99042 4.08141 4.24767 4.39506 4.43438 4.48725 4.51965 4.65817 4.73969 4.99927 5.05863 5.23828 5.28944 5.37677 5.48589 5.52741 5.62908 5.70911 5.87800 5.90071 6.11759 6.23695 6.41898 6.46972 6.62506 6.71019 6.79772 7.03381 7.15284 7.21952 7.27686 7.42834 7.66628 7.81216 8.01612 8.45594 8.53179 9.06502 9.64520 11.13402 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.002307 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.747055 B =12134.004734 C =13488.937569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.129 4.129 4 C 0.035 3.965 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.676 5.676 15 C 0.143 3.857 16 C 0.199 3.801 17 N -0.275 5.275 18 N -0.284 5.284 19 C 0.165 3.835 20 N -0.470 5.470 21 C 0.107 3.893 22 C -0.150 4.150 23 H 0.130 0.870 24 C 0.464 3.536 25 F -0.177 7.177 26 F -0.175 7.175 27 F -0.175 7.175 28 C -0.127 4.127 29 C -0.025 4.025 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.337 0.663 42 H 0.046 0.954 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.235 10.495 -26.459 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.309 5.309 15 C 0.011 3.989 16 C -0.068 4.068 17 N -0.114 5.114 18 N -0.123 5.123 19 C -0.102 4.102 20 N -0.162 5.162 21 C -0.017 4.017 22 C -0.170 4.170 23 H 0.148 0.852 24 C 0.410 3.590 25 F -0.159 7.159 26 F -0.156 7.156 27 F -0.156 7.156 28 C -0.165 4.165 29 C -0.065 4.065 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.120 0.880 48 H 0.129 0.871 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.399 9.409 -26.645 28.598 hybrid contribution 2.237 1.347 1.400 2.963 sum 6.636 10.756 -25.246 28.233 Atomic orbital electron populations 1.21606 0.94754 1.00834 1.00234 1.20640 0.96076 0.94890 0.94189 1.21777 0.99617 0.96822 1.00423 1.19113 0.95843 0.95281 0.90028 1.21187 1.30897 1.11994 0.90596 0.92352 1.25008 0.95373 0.95092 0.99045 1.69953 1.37372 1.22952 1.23446 0.86725 0.79269 0.79731 0.82674 1.20275 1.21428 1.20375 1.22194 0.96446 0.98528 0.88581 1.60526 1.63822 1.06175 1.00373 1.20297 0.96396 0.98213 0.83959 1.24669 0.92293 0.91029 0.98802 1.74582 1.13896 1.19248 1.03719 1.74122 1.19063 1.04365 1.14757 1.24649 0.89934 1.01803 0.93800 1.45803 1.17819 1.27873 1.24752 1.21883 0.84041 0.98438 0.97357 1.22796 0.94310 0.98890 1.00994 0.85201 1.20078 0.84526 0.79475 0.74963 1.93241 1.60835 1.71789 1.89998 1.93215 1.91413 1.79063 1.51922 1.93236 1.91831 1.70355 1.60191 1.21843 0.93599 0.97565 1.03467 1.20122 0.99724 0.91538 0.95080 0.92632 0.93909 0.93940 0.94069 0.95125 0.91523 0.96913 0.96527 0.93079 0.95443 0.90801 0.84433 0.93650 0.87212 0.87663 0.87183 0.89177 0.88044 0.87117 0.88221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 2 C -0.06 -1.10 0.60 -154.51 -0.09 -1.19 16 3 C -0.13 -2.28 7.89 37.16 0.29 -1.99 16 4 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 5 C -0.51 -13.67 7.65 -34.44 -0.26 -13.94 16 6 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 14 N -0.68 -9.20 5.70 -115.06 -0.66 -9.86 16 15 C 0.14 1.63 6.09 -4.98 -0.03 1.60 16 16 C 0.20 2.45 7.58 -155.45 -1.18 1.27 16 17 N -0.27 -4.22 12.23 32.70 0.40 -3.82 16 18 N -0.28 -4.00 12.21 32.76 0.40 -3.60 16 19 C 0.17 1.64 7.75 -155.30 -1.20 0.44 16 20 N -0.47 -4.40 3.11 -110.86 -0.35 -4.75 16 21 C 0.11 0.64 5.79 -4.01 -0.02 0.62 16 22 C -0.15 -0.63 2.17 -90.38 -0.20 -0.82 16 23 H 0.13 0.38 8.12 -51.93 -0.42 -0.04 16 24 C 0.46 2.54 2.69 37.15 0.10 2.64 16 25 F -0.18 -1.19 16.99 2.25 0.04 -1.15 16 26 F -0.17 -1.02 16.64 2.25 0.04 -0.99 16 27 F -0.17 -1.19 16.32 2.25 0.04 -1.15 16 28 C -0.13 -0.46 5.00 -26.42 -0.13 -0.59 16 29 C -0.03 -0.13 6.33 -27.59 -0.17 -0.30 16 30 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 31 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.46 6.57 -51.93 -0.34 0.12 16 35 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.34 4.36 6.76 -39.29 -0.27 4.10 16 42 H 0.05 0.42 7.75 -51.93 -0.40 0.02 16 43 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.11 0.62 7.56 -51.93 -0.39 0.23 16 45 H 0.11 0.55 7.78 -51.93 -0.40 0.15 16 46 H 0.09 0.38 8.05 -51.93 -0.42 -0.04 16 47 H 0.10 0.20 7.55 -51.93 -0.39 -0.19 16 48 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -33.09 397.35 -8.57 -41.67 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.36 Total: -2.06 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.83 Total: -10.92 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.54 Total: -47.80 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.11 Total: -3.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.09 -8.57 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402037.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.063 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds