Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47478 * 239.99871 * 2 1 3 5 5 C 1.50701 * 109.46684 * 60.00071 * 4 2 1 6 6 H 1.07998 * 120.00212 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99843 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99973 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00184 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47057 * 59.99737 * 9 7 5 11 11 H 1.48493 * 109.47360 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46933 * 299.99986 * 9 7 5 13 13 C 1.53004 * 109.47312 * 119.99894 * 2 1 3 14 14 N 1.46897 * 109.46835 * 300.00320 * 13 2 1 15 15 C 1.46900 * 110.99726 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.47181 * 179.97438 * 15 14 13 17 17 N 1.30833 * 126.46599 * 269.95915 * 16 15 14 18 18 N 1.28914 * 109.74239 * 180.08605 * 17 16 15 19 19 C 1.29834 * 109.47605 * 0.02562 * 18 17 16 20 20 N 1.34692 * 126.46262 * 89.99520 * 16 15 14 21 21 C 1.46260 * 128.85100 * 359.81825 * 20 16 15 22 22 C 1.53322 * 108.72927 * 197.07926 * 21 20 16 23 23 H 1.08999 * 109.45279 * 69.72877 * 22 21 20 24 24 C 1.52996 * 109.45368 * 189.67063 * 22 21 20 25 25 F 1.39903 * 109.47206 * 180.10582 * 24 22 21 26 26 F 1.39907 * 109.46990 * 300.10204 * 24 22 21 27 27 F 1.39892 * 109.47482 * 60.10612 * 24 22 21 28 28 C 1.53147 * 109.57403 * 309.69829 * 22 21 20 29 29 C 1.50822 * 128.50984 * 179.80139 * 19 18 17 30 30 H 1.09002 * 109.47022 * 300.00054 * 1 2 3 31 31 H 1.09005 * 109.46711 * 60.00061 * 1 2 3 32 32 H 1.09000 * 109.46713 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47418 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47098 * 300.00199 * 3 2 1 35 35 H 1.09002 * 109.47121 * 60.00006 * 3 2 1 36 36 H 1.08997 * 109.47069 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47062 * 300.00538 * 4 2 1 38 38 H 0.97000 * 120.00105 * 180.02562 * 8 7 5 39 39 H 1.08992 * 109.47034 * 180.02562 * 13 2 1 40 40 H 1.08996 * 109.46636 * 59.99825 * 13 2 1 41 41 H 1.00905 * 111.00003 * 303.94662 * 14 13 2 42 42 H 1.08994 * 109.47429 * 59.99935 * 15 14 13 43 43 H 1.08997 * 109.47071 * 299.99387 * 15 14 13 44 44 H 1.09002 * 109.58911 * 77.30795 * 21 20 16 45 45 H 1.08995 * 109.72026 * 316.93183 * 21 20 16 46 46 H 1.09002 * 109.49939 * 189.39282 * 28 22 21 47 47 H 1.09000 * 109.50125 * 309.46287 * 28 22 21 48 48 H 1.09002 * 109.70477 * 76.26061 * 29 19 18 49 49 H 1.08992 * 109.76229 * 315.57087 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8705 -0.4822 -3.7319 8 7 2.6266 -1.5514 -3.8526 9 14 1.2472 0.3980 -5.2572 10 1 1.7421 1.7981 -5.2577 11 1 1.7413 -0.3026 -6.4697 12 1 -0.2378 0.3979 -5.2567 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4486 15 6 2.0209 -0.6952 3.6703 16 6 1.5002 0.0421 4.8771 17 7 2.0915 1.0290 5.5003 18 7 1.3626 1.4180 6.4899 19 6 0.2821 0.6999 6.5403 20 7 0.3388 -0.1910 5.5181 21 6 -0.6906 -1.1860 5.2189 22 6 -1.9838 -0.7889 5.9405 23 1 -2.3992 0.1051 5.4753 24 6 -2.9953 -1.9323 5.8397 25 9 -4.1764 -1.5693 6.4959 26 9 -3.2714 -2.1933 4.4932 27 9 -2.4634 -3.0796 6.4376 28 6 -1.6819 -0.5035 7.4145 29 6 -0.8579 0.7865 7.5240 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 -0.7209 -1.2494 37 1 1.6767 -1.7489 -1.2493 38 1 2.8610 -1.8828 -4.7336 39 1 3.1300 -0.7208 1.2495 40 1 1.6767 -1.7488 1.2492 41 1 1.8198 0.9436 2.4401 42 1 3.1107 -0.6954 3.6873 43 1 1.6570 -1.7225 3.6869 44 1 -0.3639 -2.1659 5.5671 45 1 -0.8675 -1.2204 4.1439 46 1 -2.6175 -0.3851 7.9612 47 1 -1.1159 -1.3335 7.8374 48 1 -1.4854 1.6450 7.2847 49 1 -0.4649 0.8877 8.5356 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095402038.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -113.077046 kcal Electronic energy + Delta-G solvation = -33363.862265 eV Core-core repulsion = 28524.603305 eV Total energy + Delta-G solvation = -4839.258960 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -51.19400 -48.66656 -48.65745 -44.40894 -39.25447 -38.65563 -36.31526 -34.76429 -34.04344 -32.74787 -30.81876 -29.04227 -27.90626 -27.75227 -27.30349 -26.00508 -24.92619 -23.94638 -23.45367 -22.15628 -20.96376 -19.70261 -19.45661 -19.36566 -18.64803 -18.31600 -17.79650 -17.43078 -16.70818 -16.56184 -16.40646 -15.84424 -15.74431 -15.57707 -15.35978 -15.19353 -15.02679 -14.95092 -14.80017 -14.76734 -14.70313 -14.58960 -14.19078 -14.01919 -13.87619 -13.51246 -13.46693 -13.36974 -12.77154 -12.73427 -12.65913 -12.55710 -12.44513 -12.33457 -12.24049 -12.16226 -12.14084 -11.92851 -11.42822 -11.36921 -11.18860 -10.87468 -10.78836 -10.48598 -10.18354 -9.46847 -8.13137 -6.19475 0.69527 1.18739 1.41488 1.42897 1.50211 1.71551 1.73149 2.44258 2.59507 2.63268 2.84935 3.04027 3.21118 3.22785 3.38762 3.48940 3.53391 3.71094 3.89535 3.91161 4.12750 4.17475 4.20033 4.22119 4.35554 4.43003 4.45423 4.54889 4.75616 4.76989 4.79201 4.86925 4.91695 4.95243 4.96398 5.07075 5.10364 5.19769 5.22010 5.53056 5.54423 5.59636 5.62896 5.77254 5.87234 5.90905 5.95064 6.27239 6.37760 6.95549 7.47687 7.63551 8.98807 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.012348 B = 0.002339 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.024549 B =11969.744845 C =13419.383269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.054 4.054 3 C -0.123 4.123 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.676 5.676 15 C 0.144 3.856 16 C 0.196 3.804 17 N -0.333 5.333 18 N -0.331 5.331 19 C 0.178 3.822 20 N -0.456 5.456 21 C 0.103 3.897 22 C -0.143 4.143 23 H 0.140 0.860 24 C 0.469 3.531 25 F -0.176 7.176 26 F -0.186 7.186 27 F -0.181 7.181 28 C -0.119 4.119 29 C -0.024 4.024 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.060 0.940 36 H -0.015 1.015 37 H -0.010 1.010 38 H 0.259 0.741 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.345 0.655 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.090 0.910 48 H 0.118 0.882 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.091 -0.534 27.539 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.181 4.181 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.046 4.046 14 N -0.309 5.309 15 C 0.013 3.987 16 C -0.073 4.073 17 N -0.173 5.173 18 N -0.169 5.169 19 C -0.090 4.090 20 N -0.146 5.146 21 C -0.020 4.020 22 C -0.163 4.163 23 H 0.158 0.842 24 C 0.414 3.586 25 F -0.158 7.158 26 F -0.168 7.168 27 F -0.163 7.163 28 C -0.157 4.157 29 C -0.063 4.063 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.004 0.996 37 H 0.008 0.992 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.164 0.836 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.142 0.858 47 H 0.108 0.892 48 H 0.136 0.864 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.597 0.037 27.748 30.474 hybrid contribution 0.102 -0.751 -1.828 1.979 sum -12.494 -0.714 25.920 28.783 Atomic orbital electron populations 1.21488 0.94150 1.00361 1.00271 1.20489 0.96386 0.95255 0.93322 1.21693 0.99538 0.96028 1.00812 1.18988 0.94055 0.94253 0.92342 1.21594 1.30254 1.11903 0.91565 0.91818 1.25864 0.95736 0.95884 1.02401 1.70087 1.38777 1.24851 1.24058 0.85695 0.78966 0.78777 0.78796 1.19522 1.21382 1.19337 1.21872 0.96513 0.97894 0.88288 1.60571 1.63320 1.06896 1.00153 1.20281 0.98613 0.96928 0.82926 1.24590 0.85769 0.98166 0.98797 1.74440 1.25704 1.11629 1.05490 1.73983 1.03435 1.24090 1.15421 1.25491 0.99537 0.90492 0.93519 1.45786 1.16950 1.28514 1.23327 1.22106 0.84741 0.91414 1.03702 1.22776 0.93366 0.98034 1.02098 0.84189 1.20155 0.81565 0.83415 0.73478 1.93212 1.49929 1.91497 1.81118 1.93244 1.94408 1.94820 1.34291 1.93204 1.85939 1.53428 1.83724 1.21851 1.03587 0.98632 0.91623 1.20407 0.89627 0.99547 0.96712 0.91755 0.94563 0.94419 0.94434 0.93546 0.92130 0.99647 0.99180 0.93176 0.95613 0.90862 0.83589 0.91489 0.87231 0.86770 0.86460 0.85821 0.89162 0.86437 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.75 8.06 71.98 0.58 -3.17 16 2 C -0.05 -2.04 0.60 -52.18 -0.03 -2.07 16 3 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.52 -28.00 7.65 25.60 0.20 -27.81 16 6 H 0.06 3.34 5.68 -2.91 -0.02 3.32 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -56.51 13.29 21.45 0.28 -56.23 16 9 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.08 2.55 4.65 86.31 0.40 2.95 16 14 N -0.68 -16.96 5.70 -517.95 -2.95 -19.92 16 15 C 0.14 3.06 6.08 85.56 0.52 3.58 16 16 C 0.20 4.58 7.58 138.14 1.05 5.63 16 17 N -0.33 -9.83 12.23 -50.46 -0.62 -10.45 16 18 N -0.33 -9.02 12.21 -50.26 -0.61 -9.63 16 19 C 0.18 3.28 7.75 138.14 1.07 4.35 16 20 N -0.46 -8.04 3.11 -504.62 -1.57 -9.62 16 21 C 0.10 1.15 5.77 86.53 0.50 1.65 16 22 C -0.14 -1.03 2.17 -10.64 -0.02 -1.05 16 23 H 0.14 0.82 8.12 -2.39 -0.02 0.80 16 24 C 0.47 4.61 2.69 71.98 0.19 4.80 16 25 F -0.18 -1.84 16.65 44.97 0.75 -1.09 16 26 F -0.19 -2.64 16.98 44.97 0.76 -1.88 16 27 F -0.18 -2.01 16.32 44.97 0.73 -1.28 16 28 C -0.12 -0.49 5.00 30.80 0.15 -0.34 16 29 C -0.02 -0.18 6.34 30.04 0.19 0.01 16 30 H 0.06 1.97 7.60 -2.39 -0.02 1.95 16 31 H 0.04 1.41 6.62 -2.38 -0.02 1.40 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.05 1.83 6.62 -2.38 -0.02 1.81 16 35 H 0.06 1.83 6.57 -2.39 -0.02 1.82 16 36 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.34 9.26 6.76 -89.69 -0.61 8.65 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.11 1.88 8.04 -2.39 -0.02 1.86 16 44 H 0.11 1.00 7.57 -2.39 -0.02 0.98 16 45 H 0.12 1.45 8.08 -2.39 -0.02 1.43 16 46 H 0.12 0.03 7.56 -2.39 -0.02 0.02 16 47 H 0.09 0.38 8.05 -2.39 -0.02 0.36 16 48 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.69 397.92 5.13 -66.56 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.37 Total: 10.18 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.95 Total: -12.79 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -5.47 Total: -105.84 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 2.25 Total: -4.24 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -71.69 5.13 -66.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402038.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.514 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds