Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 C 1.53009 * 109.47154 * 239.99771 * 2 1 3 5 5 C 1.50693 * 109.47184 * 60.00045 * 4 2 1 6 6 H 1.08001 * 119.99846 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00201 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00191 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00262 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47213 * 89.99293 * 9 7 5 11 11 H 1.48495 * 109.47191 * 209.99878 * 9 7 5 12 12 H 1.48510 * 109.46759 * 329.99413 * 9 7 5 13 13 C 1.53008 * 109.47114 * 119.99919 * 2 1 3 14 14 N 1.46897 * 109.46968 * 299.99775 * 13 2 1 15 15 C 1.46897 * 110.99772 * 179.97438 * 14 13 2 16 16 C 1.50706 * 109.46900 * 179.97438 * 15 14 13 17 17 N 1.30831 * 126.46778 * 269.69030 * 16 15 14 18 18 N 1.28906 * 109.74025 * 179.79277 * 17 16 15 19 19 C 1.29842 * 109.48090 * 0.42196 * 18 17 16 20 20 N 1.34700 * 126.46119 * 90.00586 * 16 15 14 21 21 C 1.46260 * 128.84584 * 0.12547 * 20 16 15 22 22 C 1.53311 * 108.72685 * 162.90832 * 21 20 16 23 23 C 1.53141 * 109.58521 * 50.29015 * 22 21 20 24 24 C 1.50801 * 128.52711 * 179.85747 * 19 18 17 25 25 H 1.08994 * 109.76914 * 283.75927 * 24 19 18 26 26 C 1.53006 * 109.72665 * 44.41523 * 24 19 18 27 27 F 1.39903 * 109.46437 * 178.67676 * 26 24 19 28 28 F 1.39892 * 109.47230 * 298.67545 * 26 24 19 29 29 F 1.39902 * 109.47122 * 58.67929 * 26 24 19 30 30 H 1.08995 * 109.46784 * 300.00322 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00337 * 1 2 3 32 32 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46445 * 299.99747 * 3 2 1 35 35 H 1.08995 * 109.47160 * 59.99259 * 3 2 1 36 36 H 1.08994 * 109.46903 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46651 * 299.99965 * 4 2 1 38 38 H 0.96991 * 120.00188 * 180.02562 * 8 7 5 39 39 H 1.08993 * 109.46954 * 179.97438 * 13 2 1 40 40 H 1.09004 * 109.46833 * 59.99846 * 13 2 1 41 41 H 1.00901 * 110.99726 * 303.95798 * 14 13 2 42 42 H 1.09000 * 109.46743 * 60.00757 * 15 14 13 43 43 H 1.09000 * 109.47313 * 299.99940 * 15 14 13 44 44 H 1.09001 * 109.59277 * 282.68032 * 21 20 16 45 45 H 1.09005 * 109.59328 * 42.98272 * 21 20 16 46 46 H 1.08996 * 109.45598 * 170.32329 * 22 21 20 47 47 H 1.09001 * 109.45499 * 290.25294 * 22 21 20 48 48 H 1.09008 * 109.50046 * 50.51237 * 23 22 21 49 49 H 1.08993 * 109.50286 * 170.58434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5378 -0.0110 -2.4797 6 1 0.9165 0.8668 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8526 9 14 1.2484 0.3985 -5.2572 10 1 2.2272 1.4395 -5.6615 11 1 1.0826 -0.5805 -6.3613 12 1 -0.0594 1.0370 -4.9613 13 6 2.0401 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.5004 0.0423 4.8771 17 7 2.0939 1.0258 5.5032 18 7 1.3615 1.4201 6.4880 19 6 0.2800 0.7033 6.5374 20 7 0.3389 -0.1909 5.5182 21 6 -0.6875 -1.1901 5.2228 22 6 -1.5878 -1.3497 6.4534 23 6 -2.0570 0.0285 6.9284 24 6 -0.8645 0.7960 7.5150 25 1 -0.5732 0.3519 8.4668 26 6 -1.2469 2.2626 7.7249 27 9 -2.3283 2.3404 8.6091 28 9 -0.1564 2.9569 8.2595 29 9 -1.6058 2.8312 6.4981 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7490 -1.2492 38 1 2.8608 -1.8831 -4.7336 39 1 3.1300 -0.7217 1.2491 40 1 1.6767 -1.7490 1.2493 41 1 1.8199 0.9436 2.4401 42 1 3.1108 -0.6953 3.6873 43 1 1.6571 -1.7225 3.6869 44 1 -1.2851 -0.8600 4.3730 45 1 -0.2132 -2.1430 4.9880 46 1 -2.4539 -1.9581 6.1932 47 1 -1.0284 -1.8377 7.2516 48 1 -2.4677 0.5837 6.0850 49 1 -2.8243 -0.0919 7.6930 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095402041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = -92.627585 kcal Electronic energy + Delta-G solvation = -33406.583520 eV Core-core repulsion = 28568.211314 eV Total energy + Delta-G solvation = -4838.372205 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.42330 -47.95134 -47.81600 -43.63200 -37.98137 -37.79087 -35.24805 -34.04068 -32.27366 -31.59850 -30.16111 -27.28940 -26.80739 -26.44664 -26.36921 -24.48571 -23.76260 -23.32750 -22.28753 -21.31114 -20.27519 -18.83413 -18.66566 -18.24535 -17.95903 -16.95836 -16.75024 -16.27208 -15.73770 -15.55600 -15.11860 -14.81830 -14.71674 -14.60086 -14.52284 -14.34805 -14.27677 -14.15849 -13.98910 -13.95916 -13.55562 -13.28998 -13.12138 -12.87657 -12.62583 -12.45092 -12.03049 -11.99265 -11.92893 -11.85528 -11.73621 -11.53918 -11.03735 -10.92672 -10.81215 -10.60217 -10.53522 -10.39774 -10.33363 -10.17841 -9.75053 -9.48448 -9.06752 -8.88844 -8.34834 -8.33988 -5.99203 -3.99344 1.35665 2.01166 2.28788 2.62544 3.16074 3.31762 3.34125 3.38537 3.40590 3.41233 3.80337 3.89234 4.03664 4.12394 4.17397 4.41465 4.44380 4.51734 4.61236 4.68243 4.77553 4.91302 5.05555 5.09456 5.23197 5.35353 5.36778 5.37631 5.56321 5.64118 5.73382 5.80216 5.91673 6.15388 6.23881 6.43843 6.48544 6.58321 6.71686 6.77383 7.02382 7.15021 7.19025 7.26347 7.44825 7.65866 7.80105 8.00735 8.44319 8.44793 9.05855 9.63764 11.12413 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002025 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.435343 B =13826.878945 C =14018.284372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.131 4.131 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.071 3.929 14 N -0.684 5.684 15 C 0.141 3.859 16 C 0.207 3.793 17 N -0.291 5.291 18 N -0.264 5.264 19 C 0.152 3.848 20 N -0.449 5.449 21 C 0.099 3.901 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.041 4.041 25 H 0.139 0.861 26 C 0.466 3.534 27 F -0.180 7.180 28 F -0.164 7.164 29 F -0.176 7.176 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.349 0.651 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.517 -1.253 26.584 28.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.318 5.318 15 C 0.009 3.991 16 C -0.061 4.061 17 N -0.132 5.132 18 N -0.104 5.104 19 C -0.116 4.116 20 N -0.139 5.139 21 C -0.023 4.023 22 C -0.167 4.167 23 C -0.166 4.166 24 C -0.062 4.062 25 H 0.157 0.843 26 C 0.411 3.589 27 F -0.161 7.161 28 F -0.145 7.145 29 F -0.157 7.157 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.169 0.831 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.013 -0.647 26.776 28.594 hybrid contribution -0.287 -0.091 -1.242 1.278 sum -10.300 -0.739 25.534 27.543 Atomic orbital electron populations 1.21598 0.95045 1.00438 1.00193 1.20633 0.95802 0.95122 0.94182 1.21782 0.99924 0.96592 1.00507 1.19125 0.96000 0.95135 0.90079 1.21218 1.30820 1.11929 0.90577 0.92304 1.25008 0.95399 0.95091 0.99063 1.69957 1.37277 1.23162 1.23330 0.86667 0.79257 0.79437 0.83080 1.20786 1.21375 1.19924 1.22166 0.96926 0.98006 0.88669 1.60640 1.63573 1.07290 1.00259 1.20261 0.98494 0.96239 0.84080 1.24704 0.84801 0.98209 0.98367 1.74577 1.23950 1.10414 1.04308 1.74169 1.00852 1.21061 1.14328 1.23510 0.99096 0.94405 0.94555 1.45806 1.17577 1.27783 1.22757 1.22163 0.88815 0.91550 0.99782 1.21899 1.00528 0.97111 0.97206 1.21849 0.95568 0.96122 1.03071 1.20905 0.93127 0.92205 1.00009 0.84305 1.19948 0.74992 0.89624 0.74309 1.93196 1.56510 1.96939 1.69466 1.93276 1.53818 1.81315 1.86090 1.93220 1.91909 1.86877 1.43699 0.94142 0.92570 0.94189 0.93867 0.91627 0.94833 0.96792 0.96660 0.93145 0.95123 0.91267 0.83105 0.91377 0.89213 0.87921 0.87973 0.87713 0.90076 0.89261 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 8.06 37.16 0.30 -1.81 16 2 C -0.06 -1.07 0.60 -154.50 -0.09 -1.17 16 3 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.56 7.65 -34.45 -0.26 -13.82 16 6 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 14 N -0.68 -9.11 5.70 -115.06 -0.66 -9.77 16 15 C 0.14 1.57 6.09 -4.97 -0.03 1.54 16 16 C 0.21 2.56 7.58 -155.45 -1.18 1.38 16 17 N -0.29 -4.45 12.23 32.70 0.40 -4.05 16 18 N -0.26 -3.89 11.43 32.76 0.37 -3.51 16 19 C 0.15 1.68 6.74 -155.30 -1.05 0.63 16 20 N -0.45 -4.47 3.11 -110.86 -0.35 -4.82 16 21 C 0.10 0.58 6.75 -4.01 -0.03 0.56 16 22 C -0.13 -0.42 5.94 -26.50 -0.16 -0.57 16 23 C -0.13 -0.57 5.02 -26.42 -0.13 -0.70 16 24 C -0.04 -0.29 2.57 -91.48 -0.23 -0.53 16 25 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 26 C 0.47 4.34 2.69 37.16 0.10 4.44 16 27 F -0.18 -1.45 17.03 2.25 0.04 -1.41 16 28 F -0.16 -1.89 16.46 2.25 0.04 -1.86 16 29 F -0.18 -1.99 16.33 2.25 0.04 -1.95 16 30 H 0.04 0.67 7.60 -51.93 -0.39 0.27 16 31 H 0.06 1.12 6.62 -51.93 -0.34 0.78 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 35 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.35 5.04 6.76 -39.29 -0.27 4.77 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.82 7.75 -51.93 -0.40 0.41 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.46 7.84 -51.93 -0.41 0.05 16 46 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 47 H 0.08 0.22 8.12 -51.93 -0.42 -0.20 16 48 H 0.09 0.49 7.52 -51.92 -0.39 0.10 16 49 H 0.10 0.23 8.13 -51.93 -0.42 -0.19 16 LS Contribution 397.11 15.07 5.98 5.98 Total: -1.00 -32.93 397.11 -8.51 -41.44 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -7.39 Total: -1.82 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.70 Total: -8.93 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: 0.51 Total: -47.78 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.93 -8.51 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.186 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds