Wall clock time and date at job start Tue Mar 31 2020 06:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47538 * 2 1 4 4 C 1.53009 * 109.47154 * 239.99771 * 2 1 3 5 5 C 1.50693 * 109.47184 * 60.00045 * 4 2 1 6 6 H 1.08001 * 119.99846 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00201 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00191 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00262 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47213 * 89.99293 * 9 7 5 11 11 H 1.48495 * 109.47191 * 209.99878 * 9 7 5 12 12 H 1.48510 * 109.46759 * 329.99413 * 9 7 5 13 13 C 1.53008 * 109.47114 * 119.99919 * 2 1 3 14 14 N 1.46897 * 109.46968 * 299.99775 * 13 2 1 15 15 C 1.46897 * 110.99772 * 179.97438 * 14 13 2 16 16 C 1.50706 * 109.46900 * 179.97438 * 15 14 13 17 17 N 1.30831 * 126.46778 * 269.69030 * 16 15 14 18 18 N 1.28906 * 109.74025 * 179.79277 * 17 16 15 19 19 C 1.29842 * 109.48090 * 0.42196 * 18 17 16 20 20 N 1.34700 * 126.46119 * 90.00586 * 16 15 14 21 21 C 1.46260 * 128.84584 * 0.12547 * 20 16 15 22 22 C 1.53311 * 108.72685 * 162.90832 * 21 20 16 23 23 C 1.53141 * 109.58521 * 50.29015 * 22 21 20 24 24 C 1.50801 * 128.52711 * 179.85747 * 19 18 17 25 25 H 1.08994 * 109.76914 * 283.75927 * 24 19 18 26 26 C 1.53006 * 109.72665 * 44.41523 * 24 19 18 27 27 F 1.39903 * 109.46437 * 178.67676 * 26 24 19 28 28 F 1.39892 * 109.47230 * 298.67545 * 26 24 19 29 29 F 1.39902 * 109.47122 * 58.67929 * 26 24 19 30 30 H 1.08995 * 109.46784 * 300.00322 * 1 2 3 31 31 H 1.09004 * 109.46593 * 60.00337 * 1 2 3 32 32 H 1.09000 * 109.46751 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46445 * 299.99747 * 3 2 1 35 35 H 1.08995 * 109.47160 * 59.99259 * 3 2 1 36 36 H 1.08994 * 109.46903 * 180.02562 * 4 2 1 37 37 H 1.09005 * 109.46651 * 299.99965 * 4 2 1 38 38 H 0.96991 * 120.00188 * 180.02562 * 8 7 5 39 39 H 1.08993 * 109.46954 * 179.97438 * 13 2 1 40 40 H 1.09004 * 109.46833 * 59.99846 * 13 2 1 41 41 H 1.00901 * 110.99726 * 303.95798 * 14 13 2 42 42 H 1.09000 * 109.46743 * 60.00757 * 15 14 13 43 43 H 1.09000 * 109.47313 * 299.99940 * 15 14 13 44 44 H 1.09001 * 109.59277 * 282.68032 * 21 20 16 45 45 H 1.09005 * 109.59328 * 42.98272 * 21 20 16 46 46 H 1.08996 * 109.45598 * 170.32329 * 22 21 20 47 47 H 1.09001 * 109.45499 * 290.25294 * 22 21 20 48 48 H 1.09008 * 109.50046 * 50.51237 * 23 22 21 49 49 H 1.08993 * 109.50286 * 170.58434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.5378 -0.0110 -2.4797 6 1 0.9165 0.8668 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6265 -1.5517 -3.8526 9 14 1.2484 0.3985 -5.2572 10 1 2.2272 1.4395 -5.6615 11 1 1.0826 -0.5805 -6.3613 12 1 -0.0594 1.0370 -4.9613 13 6 2.0401 -0.7213 1.2493 14 7 1.5504 -0.0287 2.4487 15 6 2.0209 -0.6952 3.6703 16 6 1.5004 0.0423 4.8771 17 7 2.0939 1.0258 5.5032 18 7 1.3615 1.4201 6.4880 19 6 0.2800 0.7033 6.5374 20 7 0.3389 -0.1909 5.5182 21 6 -0.6875 -1.1901 5.2228 22 6 -1.5878 -1.3497 6.4534 23 6 -2.0570 0.0285 6.9284 24 6 -0.8645 0.7960 7.5150 25 1 -0.5732 0.3519 8.4668 26 6 -1.2469 2.2626 7.7249 27 9 -2.3283 2.3404 8.6091 28 9 -0.1564 2.9569 8.2595 29 9 -1.6058 2.8312 6.4981 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 3.1300 -0.7217 -1.2490 37 1 1.6767 -1.7490 -1.2492 38 1 2.8608 -1.8831 -4.7336 39 1 3.1300 -0.7217 1.2491 40 1 1.6767 -1.7490 1.2493 41 1 1.8199 0.9436 2.4401 42 1 3.1108 -0.6953 3.6873 43 1 1.6571 -1.7225 3.6869 44 1 -1.2851 -0.8600 4.3730 45 1 -0.2132 -2.1430 4.9880 46 1 -2.4539 -1.9581 6.1932 47 1 -1.0284 -1.8377 7.2516 48 1 -2.4677 0.5837 6.0850 49 1 -2.8243 -0.0919 7.6930 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095402041.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:17 Heat of formation + Delta-G solvation = -111.715938 kcal Electronic energy + Delta-G solvation = -33407.411253 eV Core-core repulsion = 28568.211314 eV Total energy + Delta-G solvation = -4839.199938 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -51.17136 -48.68296 -48.61767 -44.47149 -39.25130 -38.46988 -36.38221 -35.06076 -34.12801 -32.20345 -31.11264 -29.04913 -27.90960 -27.73141 -27.32700 -25.95346 -24.43617 -24.00861 -23.84917 -22.14836 -20.86591 -19.62541 -19.55840 -19.37652 -18.81980 -18.31819 -17.73673 -17.51916 -16.75346 -16.56405 -16.34395 -15.73547 -15.65233 -15.56624 -15.35278 -15.12330 -15.06247 -14.99830 -14.79677 -14.75044 -14.72835 -14.54419 -14.15213 -14.01430 -13.88582 -13.51127 -13.41931 -13.35988 -12.80117 -12.70207 -12.69035 -12.44613 -12.35198 -12.24451 -12.23725 -12.14614 -12.05032 -11.90373 -11.48194 -11.37791 -11.09237 -10.87616 -10.78534 -10.48903 -10.36345 -9.46206 -8.13147 -6.19107 0.54788 1.31081 1.40997 1.41715 1.50369 1.51803 1.80881 2.44207 2.49635 2.70727 2.83912 3.04540 3.21195 3.28823 3.45834 3.48834 3.56647 3.78705 3.85841 4.02507 4.13874 4.22389 4.26661 4.31514 4.35475 4.43807 4.55140 4.61275 4.77348 4.78820 4.82163 4.87063 4.91049 4.95810 5.03368 5.06963 5.12000 5.19760 5.22298 5.53126 5.54623 5.59919 5.63409 5.76345 5.87315 5.92046 5.95663 6.25565 6.38280 6.95923 7.47962 7.54215 8.98889 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.018243 B = 0.002025 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.435343 B =13826.878945 C =14018.284372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.053 4.053 3 C -0.125 4.125 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.084 3.916 14 N -0.677 5.677 15 C 0.146 3.854 16 C 0.202 3.798 17 N -0.334 5.334 18 N -0.312 5.312 19 C 0.161 3.839 20 N -0.443 5.443 21 C 0.086 3.914 22 C -0.121 4.121 23 C -0.126 4.126 24 C -0.037 4.037 25 H 0.167 0.833 26 C 0.462 3.538 27 F -0.171 7.171 28 F -0.182 7.182 29 F -0.191 7.191 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.058 0.942 36 H -0.015 1.015 37 H -0.008 1.008 38 H 0.259 0.741 39 H 0.025 0.975 40 H 0.077 0.923 41 H 0.343 0.657 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.134 0.866 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -2.136 27.991 30.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.054 4.054 3 C -0.182 4.182 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.189 1.189 13 C -0.045 4.045 14 N -0.310 5.310 15 C 0.015 3.985 16 C -0.067 4.067 17 N -0.175 5.175 18 N -0.151 5.151 19 C -0.108 4.108 20 N -0.132 5.132 21 C -0.035 4.035 22 C -0.158 4.158 23 C -0.163 4.163 24 C -0.059 4.059 25 H 0.184 0.816 26 C 0.407 3.593 27 F -0.152 7.152 28 F -0.163 7.163 29 F -0.173 7.173 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.004 0.996 37 H 0.011 0.989 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.119 0.881 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.286 -1.532 28.195 30.794 hybrid contribution 0.377 0.191 -1.613 1.667 sum -11.908 -1.341 26.582 29.159 Atomic orbital electron populations 1.21480 0.94140 1.00461 1.00129 1.20480 0.96387 0.95080 0.93410 1.21702 0.99543 0.96251 1.00706 1.19002 0.94081 0.94361 0.92289 1.21606 1.30125 1.11817 0.91572 0.91947 1.25850 0.95796 0.95888 1.02355 1.70085 1.38825 1.24800 1.23976 0.85649 0.79036 0.78278 0.79316 1.20404 1.21169 1.18852 1.21871 0.96483 0.97974 0.88137 1.60568 1.63358 1.06822 1.00269 1.20308 0.98550 0.97077 0.82569 1.24732 0.85645 0.97827 0.98516 1.74458 1.25617 1.12051 1.05415 1.74067 1.02666 1.23085 1.15323 1.24090 0.98787 0.93247 0.94707 1.46038 1.17431 1.27990 1.21756 1.22618 0.88412 0.91140 1.01312 1.21951 1.01065 0.96637 0.96150 1.21962 0.94779 0.96151 1.03448 1.21220 0.93041 0.91019 1.00604 0.81579 1.20299 0.74726 0.90491 0.73767 1.93208 1.55987 1.96959 1.69073 1.93240 1.54807 1.81963 1.86303 1.93186 1.92026 1.87337 1.44750 0.91960 0.94702 0.94110 0.94428 0.93593 0.92355 0.99636 0.98925 0.93185 0.95670 0.90509 0.83815 0.91501 0.86543 0.88057 0.86187 0.84765 0.88934 0.90409 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.70 8.06 71.98 0.58 -3.12 16 2 C -0.05 -1.99 0.60 -52.18 -0.03 -2.02 16 3 C -0.12 -4.53 7.89 71.98 0.57 -3.97 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -27.78 7.65 25.60 0.20 -27.58 16 6 H 0.06 3.28 5.68 -2.91 -0.02 3.26 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -56.04 13.29 21.45 0.28 -55.76 16 9 Si 0.95 44.03 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.53 4.65 86.31 0.40 2.93 16 14 N -0.68 -16.93 5.70 -517.92 -2.95 -19.89 16 15 C 0.15 3.01 6.09 85.56 0.52 3.53 16 16 C 0.20 4.77 7.58 138.14 1.05 5.82 16 17 N -0.33 -10.28 12.23 -50.46 -0.62 -10.90 16 18 N -0.31 -9.23 11.43 -50.28 -0.57 -9.80 16 19 C 0.16 3.35 6.74 138.14 0.93 4.28 16 20 N -0.44 -7.95 3.11 -504.65 -1.57 -9.53 16 21 C 0.09 0.72 6.75 86.53 0.58 1.31 16 22 C -0.12 -0.25 5.94 30.75 0.18 -0.07 16 23 C -0.13 -0.66 5.02 30.80 0.15 -0.51 16 24 C -0.04 -0.45 2.57 -11.35 -0.03 -0.48 16 25 H 0.17 1.10 8.14 -2.39 -0.02 1.08 16 26 C 0.46 8.08 2.69 71.98 0.19 8.28 16 27 F -0.17 -2.45 17.03 44.97 0.77 -1.69 16 28 F -0.18 -4.20 16.46 44.97 0.74 -3.46 16 29 F -0.19 -4.25 16.33 44.97 0.73 -3.52 16 30 H 0.06 1.92 7.60 -2.39 -0.02 1.90 16 31 H 0.03 1.36 6.62 -2.38 -0.02 1.34 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.83 6.62 -2.38 -0.02 1.81 16 35 H 0.06 1.82 6.57 -2.39 -0.02 1.80 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.34 9.46 6.76 -89.69 -0.61 8.85 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 1.77 7.75 -2.39 -0.02 1.75 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 45 H 0.12 0.61 7.84 -2.38 -0.02 0.59 16 46 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.09 0.06 8.12 -2.39 -0.02 0.04 16 48 H 0.08 0.64 7.52 -2.38 -0.02 0.62 16 49 H 0.13 0.00 8.13 -2.39 -0.02 -0.02 16 Total: -1.00 -74.61 397.11 5.09 -69.52 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.37 Total: 8.11 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 5.88 Total: -9.15 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -5.43 Total: -105.87 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 2.24 Total: -8.66 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -74.61 5.09 -69.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402041.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.201 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds