Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47502 * 2 1 4 4 C 1.53000 * 109.47043 * 239.99726 * 2 1 3 5 5 C 1.50698 * 109.47051 * 60.00476 * 4 2 1 6 6 H 1.07998 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00253 * 179.97438 * 5 4 2 8 8 N 1.31525 * 119.99781 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00461 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46993 * 89.99909 * 9 7 5 11 11 H 1.48500 * 109.47637 * 210.00173 * 9 7 5 12 12 H 1.48497 * 109.47124 * 330.00334 * 9 7 5 13 13 C 1.53005 * 109.47045 * 119.99829 * 2 1 3 14 14 N 1.46900 * 109.47234 * 300.00198 * 13 2 1 15 15 C 1.46900 * 110.99863 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.47029 * 179.97438 * 15 14 13 17 17 N 1.30838 * 126.46237 * 269.97942 * 16 15 14 18 18 N 1.28910 * 109.73707 * 180.02562 * 17 16 15 19 19 C 1.29831 * 109.47946 * 0.02722 * 18 17 16 20 20 N 1.34688 * 126.46326 * 89.99886 * 16 15 14 21 21 C 1.46251 * 128.85031 * 359.82310 * 20 16 15 22 22 C 1.53315 * 108.72736 * 197.15151 * 21 20 16 23 23 C 1.53138 * 109.58450 * 309.69773 * 22 21 20 24 24 C 1.50799 * 128.52097 * 179.97438 * 19 18 17 25 25 H 1.09004 * 109.73189 * 76.20261 * 24 19 18 26 26 C 1.53000 * 109.76688 * 315.54219 * 24 19 18 27 27 F 1.39892 * 109.47297 * 301.30007 * 26 24 19 28 28 F 1.39894 * 109.47320 * 61.30532 * 26 24 19 29 29 F 1.39908 * 109.47011 * 181.30121 * 26 24 19 30 30 H 1.08999 * 109.47112 * 299.99995 * 1 2 3 31 31 H 1.09005 * 109.47245 * 59.99998 * 1 2 3 32 32 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08989 * 109.47117 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46978 * 300.00479 * 3 2 1 35 35 H 1.08999 * 109.46933 * 59.99894 * 3 2 1 36 36 H 1.09003 * 109.47199 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47127 * 299.99978 * 4 2 1 38 38 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47232 * 179.97438 * 13 2 1 40 40 H 1.09007 * 109.46696 * 60.00106 * 13 2 1 41 41 H 1.00895 * 110.99776 * 303.94835 * 14 13 2 42 42 H 1.09003 * 109.47165 * 59.99901 * 15 14 13 43 43 H 1.08998 * 109.47353 * 299.99961 * 15 14 13 44 44 H 1.09002 * 109.59327 * 316.91573 * 21 20 16 45 45 H 1.09009 * 109.59133 * 77.21637 * 21 20 16 46 46 H 1.09004 * 109.45569 * 189.66373 * 22 21 20 47 47 H 1.09008 * 109.45814 * 69.73368 * 22 21 20 48 48 H 1.09007 * 109.49858 * 309.48115 * 23 22 21 49 49 H 1.08996 * 109.50736 * 189.38345 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6281 -1.5504 -3.8525 9 14 1.2481 0.3985 -5.2571 10 1 2.2255 1.4409 -5.6612 11 1 1.0838 -0.5806 -6.3614 12 1 -0.0605 1.0352 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.5002 0.0421 4.8772 17 7 2.0914 1.0292 5.5001 18 7 1.3620 1.4190 6.4890 19 6 0.2813 0.7012 6.5392 20 7 0.3388 -0.1910 5.5182 21 6 -0.6905 -1.1861 5.2191 22 6 -1.9841 -0.7879 5.9391 23 6 -1.6837 -0.5011 7.4131 24 6 -0.8609 0.7908 7.5197 25 1 -1.4876 1.6491 7.2773 26 6 -0.3128 0.9365 8.9407 27 9 0.5020 -0.1603 9.2410 28 9 0.4372 2.1138 9.0329 29 9 -1.3767 0.9891 9.8478 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 2.8624 -1.8818 -4.7336 39 1 3.1300 -0.7217 1.2491 40 1 1.6766 -1.7490 1.2493 41 1 1.8198 0.9435 2.4402 42 1 3.1107 -0.6954 3.6874 43 1 1.6570 -1.7226 3.6869 44 1 -0.8659 -1.2186 4.1438 45 1 -0.3630 -2.1663 5.5659 46 1 -2.7050 -1.6024 5.8674 47 1 -2.3990 0.1057 5.4727 48 1 -1.1180 -1.3307 7.8373 49 1 -2.6197 -0.3818 7.9588 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095402042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = -93.040796 kcal Electronic energy + Delta-G solvation = -33240.746299 eV Core-core repulsion = 28402.356176 eV Total energy + Delta-G solvation = -4838.390123 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.46508 -47.99622 -47.85404 -43.63051 -37.97841 -37.80155 -35.25325 -34.04414 -32.28200 -31.58976 -30.16717 -27.29316 -26.81516 -26.45967 -26.38767 -24.48626 -23.77716 -23.33015 -22.29423 -21.33329 -20.26629 -18.86954 -18.69675 -18.30775 -17.94410 -16.95907 -16.70684 -16.28672 -15.81076 -15.53507 -15.09986 -14.87243 -14.78857 -14.56596 -14.50419 -14.33661 -14.32031 -14.17153 -14.03299 -13.99734 -13.57668 -13.29712 -13.11212 -12.92527 -12.62792 -12.46168 -12.04615 -11.97245 -11.92641 -11.87918 -11.73795 -11.53464 -11.05133 -10.94186 -10.82409 -10.60024 -10.54780 -10.40274 -10.34478 -10.19201 -9.76545 -9.48514 -9.08053 -8.90022 -8.36381 -8.35232 -6.00121 -4.00367 1.36838 1.96676 2.30601 2.61567 3.15343 3.30833 3.32164 3.37698 3.37979 3.40142 3.79718 3.89457 4.02931 4.14029 4.17691 4.41525 4.43633 4.50687 4.57304 4.68868 4.82433 4.92466 5.04715 5.10539 5.23882 5.35666 5.35852 5.38246 5.55493 5.63093 5.72864 5.80729 5.89935 6.14233 6.22150 6.42140 6.48827 6.55934 6.69951 6.75412 7.00638 7.13337 7.17126 7.24734 7.43413 7.64848 7.79002 7.99706 8.43580 8.44381 9.04805 9.62727 11.11431 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.001873 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.451167 B =14944.383832 C =15210.538292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.131 4.131 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.070 3.930 14 N -0.684 5.684 15 C 0.140 3.860 16 C 0.207 3.793 17 N -0.291 5.291 18 N -0.264 5.264 19 C 0.152 3.848 20 N -0.449 5.449 21 C 0.097 3.903 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.041 4.041 25 H 0.141 0.859 26 C 0.467 3.533 27 F -0.178 7.178 28 F -0.163 7.163 29 F -0.179 7.179 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.014 0.986 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.031 0.969 40 H 0.069 0.931 41 H 0.349 0.651 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.933 -0.673 26.014 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.188 4.188 4 C -0.003 4.003 5 C -0.546 4.546 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.058 4.058 14 N -0.318 5.318 15 C 0.009 3.991 16 C -0.061 4.061 17 N -0.132 5.132 18 N -0.104 5.104 19 C -0.115 4.115 20 N -0.139 5.139 21 C -0.026 4.026 22 C -0.167 4.167 23 C -0.165 4.165 24 C -0.063 4.063 25 H 0.159 0.841 26 C 0.412 3.588 27 F -0.160 7.160 28 F -0.144 7.144 29 F -0.161 7.161 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.169 0.831 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.131 0.869 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.408 -0.098 26.233 28.223 hybrid contribution -0.156 -0.271 -1.065 1.110 sum -10.564 -0.369 25.168 27.298 Atomic orbital electron populations 1.21599 0.95064 1.00446 1.00165 1.20629 0.95783 0.95119 0.94196 1.21782 0.99948 0.96592 1.00479 1.19123 0.96013 0.95137 0.90070 1.21213 1.30825 1.11944 0.90575 0.92313 1.25015 0.95400 0.95110 0.99079 1.69966 1.37217 1.23168 1.23334 0.86660 0.79235 0.79425 0.83074 1.20790 1.21375 1.19947 1.22171 0.96970 0.98018 0.88655 1.60654 1.63545 1.07290 1.00286 1.20270 0.98558 0.96281 0.84036 1.24700 0.84773 0.98148 0.98439 1.74581 1.24004 1.10452 1.04206 1.74168 1.01047 1.21096 1.14125 1.23503 0.99203 0.94022 0.94797 1.45805 1.17456 1.27680 1.22981 1.22196 0.86159 0.90548 1.03657 1.21893 0.96510 1.04488 0.93858 1.21862 1.01113 0.94918 0.98616 1.20935 0.93537 1.04613 0.87230 0.84134 1.19963 0.76121 0.74643 0.88104 1.93194 1.73999 1.54445 1.94352 1.93281 1.77026 1.47500 1.96626 1.93199 1.56464 1.96219 1.70190 0.94176 0.92561 0.94179 0.93857 0.91622 0.94858 0.96788 0.96658 0.93140 0.95099 0.91250 0.83134 0.91334 0.89155 0.86905 0.88860 0.87759 0.89717 0.89532 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.06 37.16 0.30 -1.76 16 2 C -0.06 -1.06 0.60 -154.50 -0.09 -1.15 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.73 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.07 1.08 4.65 -3.82 -0.02 1.06 16 14 N -0.68 -8.90 5.70 -115.05 -0.66 -9.56 16 15 C 0.14 1.56 6.08 -4.97 -0.03 1.53 16 16 C 0.21 2.56 7.58 -155.45 -1.18 1.38 16 17 N -0.29 -4.45 12.23 32.70 0.40 -4.05 16 18 N -0.26 -3.89 11.43 32.76 0.37 -3.52 16 19 C 0.15 1.68 6.74 -155.30 -1.05 0.63 16 20 N -0.45 -4.47 3.11 -110.87 -0.35 -4.82 16 21 C 0.10 0.57 6.74 -4.01 -0.03 0.54 16 22 C -0.13 -0.47 5.93 -26.50 -0.16 -0.62 16 23 C -0.13 -0.53 5.02 -26.38 -0.13 -0.66 16 24 C -0.04 -0.30 2.57 -91.45 -0.23 -0.53 16 25 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 26 C 0.47 4.13 2.69 37.16 0.10 4.23 16 27 F -0.18 -1.83 16.33 2.25 0.04 -1.79 16 28 F -0.16 -1.84 16.46 2.25 0.04 -1.80 16 29 F -0.18 -1.39 17.03 2.25 0.04 -1.35 16 30 H 0.04 0.64 7.60 -51.93 -0.39 0.24 16 31 H 0.06 1.10 6.62 -51.93 -0.34 0.76 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 35 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.35 4.89 6.76 -39.29 -0.27 4.63 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.83 8.04 -51.93 -0.42 0.42 16 44 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 46 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 47 H 0.08 0.34 8.12 -51.92 -0.42 -0.08 16 48 H 0.09 0.39 7.52 -51.93 -0.39 0.00 16 49 H 0.10 0.22 8.13 -51.93 -0.42 -0.20 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -32.58 397.68 -8.53 -41.11 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.42 Total: -1.88 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.70 Total: -9.02 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.51 Total: -47.46 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.11 Total: -4.94 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.58 -8.53 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.931 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds