Wall clock time and date at job start Tue Mar 31 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47502 * 2 1 4 4 C 1.53000 * 109.47043 * 239.99726 * 2 1 3 5 5 C 1.50698 * 109.47051 * 60.00476 * 4 2 1 6 6 H 1.07998 * 119.99878 * 359.97438 * 5 4 2 7 7 C 1.37869 * 120.00253 * 179.97438 * 5 4 2 8 8 N 1.31525 * 119.99781 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00461 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46993 * 89.99909 * 9 7 5 11 11 H 1.48500 * 109.47637 * 210.00173 * 9 7 5 12 12 H 1.48497 * 109.47124 * 330.00334 * 9 7 5 13 13 C 1.53005 * 109.47045 * 119.99829 * 2 1 3 14 14 N 1.46900 * 109.47234 * 300.00198 * 13 2 1 15 15 C 1.46900 * 110.99863 * 179.97438 * 14 13 2 16 16 C 1.50703 * 109.47029 * 179.97438 * 15 14 13 17 17 N 1.30838 * 126.46237 * 269.97942 * 16 15 14 18 18 N 1.28910 * 109.73707 * 180.02562 * 17 16 15 19 19 C 1.29831 * 109.47946 * 0.02722 * 18 17 16 20 20 N 1.34688 * 126.46326 * 89.99886 * 16 15 14 21 21 C 1.46251 * 128.85031 * 359.82310 * 20 16 15 22 22 C 1.53315 * 108.72736 * 197.15151 * 21 20 16 23 23 C 1.53138 * 109.58450 * 309.69773 * 22 21 20 24 24 C 1.50799 * 128.52097 * 179.97438 * 19 18 17 25 25 H 1.09004 * 109.73189 * 76.20261 * 24 19 18 26 26 C 1.53000 * 109.76688 * 315.54219 * 24 19 18 27 27 F 1.39892 * 109.47297 * 301.30007 * 26 24 19 28 28 F 1.39894 * 109.47320 * 61.30532 * 26 24 19 29 29 F 1.39908 * 109.47011 * 181.30121 * 26 24 19 30 30 H 1.08999 * 109.47112 * 299.99995 * 1 2 3 31 31 H 1.09005 * 109.47245 * 59.99998 * 1 2 3 32 32 H 1.08998 * 109.47141 * 180.02562 * 1 2 3 33 33 H 1.08989 * 109.47117 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46978 * 300.00479 * 3 2 1 35 35 H 1.08999 * 109.46933 * 59.99894 * 3 2 1 36 36 H 1.09003 * 109.47199 * 180.02562 * 4 2 1 37 37 H 1.08998 * 109.47127 * 299.99978 * 4 2 1 38 38 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 39 39 H 1.08998 * 109.47232 * 179.97438 * 13 2 1 40 40 H 1.09007 * 109.46696 * 60.00106 * 13 2 1 41 41 H 1.00895 * 110.99776 * 303.94835 * 14 13 2 42 42 H 1.09003 * 109.47165 * 59.99901 * 15 14 13 43 43 H 1.08998 * 109.47353 * 299.99961 * 15 14 13 44 44 H 1.09002 * 109.59327 * 316.91573 * 21 20 16 45 45 H 1.09009 * 109.59133 * 77.21637 * 21 20 16 46 46 H 1.09004 * 109.45569 * 189.66373 * 22 21 20 47 47 H 1.09008 * 109.45814 * 69.73368 * 22 21 20 48 48 H 1.09007 * 109.49858 * 309.48115 * 23 22 21 49 49 H 1.08996 * 109.50736 * 189.38345 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6281 -1.5504 -3.8525 9 14 1.2481 0.3985 -5.2571 10 1 2.2255 1.4409 -5.6612 11 1 1.0838 -0.5806 -6.3614 12 1 -0.0605 1.0352 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6952 3.6704 16 6 1.5002 0.0421 4.8772 17 7 2.0914 1.0292 5.5001 18 7 1.3620 1.4190 6.4890 19 6 0.2813 0.7012 6.5392 20 7 0.3388 -0.1910 5.5182 21 6 -0.6905 -1.1861 5.2191 22 6 -1.9841 -0.7879 5.9391 23 6 -1.6837 -0.5011 7.4131 24 6 -0.8609 0.7908 7.5197 25 1 -1.4876 1.6491 7.2773 26 6 -0.3128 0.9365 8.9407 27 9 0.5020 -0.1603 9.2410 28 9 0.4372 2.1138 9.0329 29 9 -1.3767 0.9891 9.8478 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 2.8624 -1.8818 -4.7336 39 1 3.1300 -0.7217 1.2491 40 1 1.6766 -1.7490 1.2493 41 1 1.8198 0.9435 2.4402 42 1 3.1107 -0.6954 3.6874 43 1 1.6570 -1.7226 3.6869 44 1 -0.8659 -1.2186 4.1438 45 1 -0.3630 -2.1663 5.5659 46 1 -2.7050 -1.6024 5.8674 47 1 -2.3990 0.1057 5.4727 48 1 -1.1180 -1.3307 7.8373 49 1 -2.6197 -0.3818 7.9588 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095402042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:21 Heat of formation + Delta-G solvation = -111.714779 kcal Electronic energy + Delta-G solvation = -33241.556064 eV Core-core repulsion = 28402.356176 eV Total energy + Delta-G solvation = -4839.199888 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.183 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -51.17457 -48.68442 -48.61820 -44.47250 -39.24666 -38.46707 -36.38129 -35.05559 -34.12223 -32.20180 -31.11421 -29.04409 -27.89635 -27.72340 -27.32405 -25.94381 -24.43841 -23.98998 -23.86445 -22.16479 -20.85516 -19.63166 -19.56128 -19.37692 -18.81944 -18.31129 -17.75108 -17.47180 -16.70240 -16.54646 -16.44639 -15.74027 -15.63740 -15.60618 -15.29966 -15.12265 -15.06494 -14.96980 -14.79519 -14.74948 -14.71657 -14.53503 -14.17908 -14.01188 -13.87669 -13.51585 -13.41727 -13.36049 -12.79582 -12.70450 -12.68801 -12.43882 -12.35275 -12.23546 -12.22964 -12.14126 -12.04647 -11.89769 -11.48123 -11.36885 -11.08983 -10.86984 -10.77971 -10.48505 -10.36298 -9.46878 -8.12692 -6.18732 0.56171 1.25562 1.41552 1.42253 1.52207 1.54751 1.79828 2.44603 2.49882 2.69674 2.83674 3.03393 3.21634 3.29376 3.46102 3.48623 3.56516 3.79713 3.87997 4.02715 4.14711 4.22374 4.23411 4.33196 4.35904 4.45492 4.56893 4.60249 4.77978 4.79192 4.81970 4.86382 4.90551 4.96489 5.03703 5.08330 5.12684 5.20785 5.23565 5.54124 5.55471 5.61156 5.64036 5.76410 5.88101 5.91629 5.95955 6.26698 6.38503 6.96489 7.48354 7.54077 8.99291 Molecular weight = 360.18amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.001873 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.451167 B =14944.383832 C =15210.538292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.053 4.053 3 C -0.125 4.125 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.064 0.936 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.263 1.263 13 C 0.083 3.917 14 N -0.674 5.674 15 C 0.146 3.854 16 C 0.202 3.798 17 N -0.334 5.334 18 N -0.312 5.312 19 C 0.161 3.839 20 N -0.443 5.443 21 C 0.084 3.916 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.039 4.039 25 H 0.162 0.838 26 C 0.464 3.536 27 F -0.189 7.189 28 F -0.182 7.182 29 F -0.171 7.171 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.059 0.941 36 H -0.016 1.016 37 H -0.008 1.008 38 H 0.259 0.741 39 H 0.024 0.976 40 H 0.076 0.924 41 H 0.344 0.656 42 H 0.066 0.934 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.135 0.865 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 -0.935 26.980 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.053 4.053 3 C -0.182 4.182 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.082 0.918 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.188 1.188 13 C -0.046 4.046 14 N -0.307 5.307 15 C 0.015 3.985 16 C -0.067 4.067 17 N -0.175 5.175 18 N -0.152 5.152 19 C -0.108 4.108 20 N -0.132 5.132 21 C -0.036 4.036 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.061 4.061 25 H 0.179 0.821 26 C 0.409 3.591 27 F -0.171 7.171 28 F -0.164 7.164 29 F -0.152 7.152 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.003 0.997 37 H 0.010 0.990 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.153 0.847 47 H 0.103 0.897 48 H 0.103 0.897 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.133 -0.361 27.213 30.219 hybrid contribution 0.671 -0.214 -1.278 1.459 sum -12.462 -0.575 25.936 28.780 Atomic orbital electron populations 1.21483 0.94012 1.00479 1.00252 1.20473 0.96486 0.95085 0.93275 1.21706 0.99505 0.96210 1.00807 1.19005 0.94033 0.94355 0.92377 1.21608 1.30071 1.11823 0.91520 0.91835 1.25872 0.95822 0.95920 1.02425 1.70098 1.38826 1.24856 1.23953 0.85632 0.79053 0.78236 0.79253 1.20426 1.21264 1.18760 1.21878 0.96452 0.97991 0.88229 1.60580 1.63210 1.06849 1.00107 1.20299 0.98507 0.97054 0.82681 1.24720 0.85578 0.97785 0.98608 1.74463 1.25635 1.12148 1.05282 1.74067 1.02849 1.23201 1.15040 1.24082 0.98901 0.92830 0.94967 1.46038 1.17341 1.27759 1.22083 1.22639 0.86263 0.90404 1.04314 1.21940 0.95634 1.05635 0.92764 1.21966 1.01606 0.92909 0.99556 1.21237 0.92586 1.07418 0.84869 0.82084 1.20231 0.75933 0.73686 0.89204 1.93171 1.74494 1.54872 1.94541 1.93244 1.77684 1.48637 1.96791 1.93212 1.55804 1.96123 1.70075 0.91734 0.94649 0.94169 0.94538 0.93535 0.92174 0.99746 0.99003 0.93221 0.95790 0.90595 0.83701 0.91626 0.86710 0.86758 0.87039 0.84662 0.89735 0.89724 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.60 8.06 71.98 0.58 -3.02 16 2 C -0.05 -1.94 0.60 -52.18 -0.03 -1.97 16 3 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -27.47 7.65 25.60 0.20 -27.28 16 6 H 0.06 3.29 5.68 -2.91 -0.02 3.28 16 7 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 8 N -0.94 -55.92 13.29 21.45 0.28 -55.63 16 9 Si 0.95 43.72 29.54 68.60 2.03 45.75 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.08 2.47 4.65 86.30 0.40 2.87 16 14 N -0.67 -16.35 5.70 -517.91 -2.95 -19.31 16 15 C 0.15 3.02 6.08 85.56 0.52 3.54 16 16 C 0.20 4.78 7.58 138.14 1.05 5.83 16 17 N -0.33 -10.28 12.23 -50.46 -0.62 -10.90 16 18 N -0.31 -9.23 11.43 -50.28 -0.57 -9.81 16 19 C 0.16 3.36 6.74 138.14 0.93 4.29 16 20 N -0.44 -7.96 3.11 -504.67 -1.57 -9.53 16 21 C 0.08 0.71 6.74 86.53 0.58 1.29 16 22 C -0.12 -0.37 5.93 30.75 0.18 -0.18 16 23 C -0.12 -0.57 5.02 30.82 0.15 -0.42 16 24 C -0.04 -0.48 2.57 -11.33 -0.03 -0.51 16 25 H 0.16 1.30 8.14 -2.38 -0.02 1.28 16 26 C 0.46 7.66 2.69 71.98 0.19 7.86 16 27 F -0.19 -3.73 16.33 44.97 0.73 -2.99 16 28 F -0.18 -4.11 16.46 44.97 0.74 -3.37 16 29 F -0.17 -2.32 17.03 44.97 0.77 -1.55 16 30 H 0.06 1.89 7.60 -2.39 -0.02 1.87 16 31 H 0.03 1.34 6.62 -2.38 -0.02 1.33 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 35 H 0.06 1.80 6.57 -2.39 -0.02 1.79 16 36 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.34 9.11 6.76 -89.70 -0.61 8.50 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.11 1.81 8.04 -2.39 -0.02 1.79 16 44 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 46 H 0.14 -0.33 8.14 -2.39 -0.02 -0.35 16 47 H 0.08 0.32 8.12 -2.38 -0.02 0.30 16 48 H 0.08 0.48 7.52 -2.38 -0.02 0.47 16 49 H 0.13 -0.03 8.13 -2.39 -0.02 -0.05 16 Total: -1.00 -73.61 397.68 5.09 -68.52 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.37 Total: 8.05 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.88 Total: -9.23 kcal Atomic # 7 Polarization: -99.74 SS G_CDS: -5.43 Total: -105.18 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 2.24 Total: -7.91 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -73.61 5.09 -68.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095402042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.197 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds