Wall clock time and date at job start Tue Mar 31 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36024 * 117.00313 * 2 1 4 4 C 1.38652 * 119.99360 * 359.97438 * 3 2 1 5 5 C 1.38128 * 120.03627 * 179.97438 * 4 3 2 6 6 C 1.38843 * 120.02632 * 0.02562 * 5 4 3 7 7 N 1.40140 * 120.00360 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99970 * 146.84576 * 7 6 5 9 9 O 1.21589 * 119.99885 * 354.63692 * 8 7 6 10 10 N 1.34777 * 119.99950 * 174.63344 * 8 7 6 11 11 C 1.46500 * 120.00172 * 0.02562 * 10 8 7 12 12 C 1.50698 * 109.47233 * 89.99533 * 11 10 8 13 13 H 1.08000 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00173 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99752 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46868 * 89.99674 * 16 14 12 18 18 H 1.48495 * 109.47292 * 209.99621 * 16 14 12 19 19 H 1.48500 * 109.46983 * 330.00060 * 16 14 12 20 20 C 1.46497 * 120.00147 * 180.27226 * 10 8 7 21 21 C 1.50694 * 109.47433 * 269.72934 * 20 10 8 22 22 C 1.38668 * 120.41994 * 269.71797 * 21 20 10 23 23 C 1.38636 * 118.42383 * 179.78287 * 22 21 20 24 24 C 1.38230 * 119.15471 * 0.51184 * 23 22 21 25 25 N 1.31856 * 120.76598 * 359.73139 * 24 23 22 26 26 C 1.31883 * 121.72514 * 359.97438 * 25 24 23 27 27 C 1.38813 * 119.98699 * 0.27451 * 6 5 4 28 28 C 1.38281 * 119.96199 * 359.45254 * 27 6 5 29 29 F 1.35096 * 120.01588 * 180.27127 * 28 27 6 30 30 H 1.08995 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47119 * 300.00498 * 1 2 3 32 32 H 1.09007 * 109.46505 * 60.00182 * 1 2 3 33 33 H 1.07996 * 119.97930 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.98750 * 179.97438 * 5 4 3 35 35 H 0.97006 * 120.00298 * 326.83591 * 7 6 5 36 36 H 1.08999 * 109.47253 * 209.99898 * 11 10 8 37 37 H 1.08996 * 109.47085 * 329.99724 * 11 10 8 38 38 H 0.97006 * 120.00352 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.46783 * 29.72869 * 20 10 8 40 40 H 1.09000 * 109.47096 * 149.72688 * 20 10 8 41 41 H 1.08000 * 120.79318 * 0.02562 * 22 21 20 42 42 H 1.07994 * 120.42116 * 180.22302 * 23 22 21 43 43 H 1.08000 * 119.61288 * 179.74934 * 24 23 22 44 44 H 1.07994 * 119.61371 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.02033 * 179.70053 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2914 2.3747 -0.0005 5 6 1.9177 3.6059 0.0000 6 6 3.3041 3.6802 0.0005 7 7 3.9390 4.9295 0.0016 8 6 5.1152 5.0871 0.6405 9 8 5.5775 4.1741 1.2970 10 7 5.7789 6.2568 0.5515 11 6 5.2216 7.3570 -0.2391 12 6 4.3433 8.2114 0.6381 13 1 4.2136 7.9603 1.6805 14 6 3.7053 9.3138 0.1100 15 7 3.8637 9.6199 -1.1591 16 14 2.6172 10.3734 1.1976 17 1 3.4327 11.4503 1.8144 18 1 1.5371 10.9784 0.3777 19 1 2.0170 9.5337 2.2653 20 6 7.0603 6.4261 1.2410 21 6 6.8176 6.9655 2.6271 22 6 6.7891 8.3333 2.8532 23 6 6.5579 8.7841 4.1437 24 6 6.3755 7.8615 5.1568 25 7 6.4143 6.5677 4.9057 26 6 6.6260 6.1032 3.6897 27 6 4.0612 2.5167 -0.0052 28 6 3.4338 1.2844 0.0000 29 9 4.1696 0.1514 -0.0001 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 0.2130 2.3178 -0.0005 34 1 1.3286 4.5112 -0.0008 35 1 3.5319 5.6809 -0.4576 36 1 6.0334 7.9632 -0.6410 37 1 4.6303 6.9514 -1.0600 38 1 3.4146 10.3952 -1.5308 39 1 7.5662 5.4630 1.3094 40 1 7.6835 7.1251 0.6832 41 1 6.9394 9.0310 2.0426 42 1 6.5254 9.8426 4.3556 43 1 6.1990 8.2045 6.1655 44 1 6.6504 5.0365 3.5226 45 1 5.1396 2.5738 -0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095413264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:31 Heat of formation + Delta-G solvation = -36.281700 kcal Electronic energy + Delta-G solvation = -31988.402883 eV Core-core repulsion = 27500.463271 eV Total energy + Delta-G solvation = -4487.939613 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.60505 -40.48932 -39.82035 -39.29020 -37.43666 -35.37338 -34.09326 -32.90987 -32.01838 -31.16758 -30.62891 -29.02924 -27.69930 -27.24907 -25.66863 -23.32498 -23.02909 -22.81064 -22.37185 -21.49218 -19.52471 -18.36523 -17.90624 -17.23081 -16.83635 -16.58246 -16.45748 -16.08011 -15.76713 -15.69881 -15.14448 -14.96580 -14.84894 -14.73389 -14.48536 -14.36342 -13.97648 -13.46481 -13.17522 -13.15460 -12.79744 -12.56479 -12.55696 -12.48036 -12.28197 -12.04889 -11.90191 -11.61817 -11.38807 -11.21727 -11.13042 -11.10944 -10.89038 -10.40317 -9.94853 -9.68156 -9.59715 -9.28797 -9.06009 -8.74459 -8.72733 -8.58785 -7.99705 -7.48630 -6.34078 -4.41910 1.23711 1.34782 1.49109 1.76224 3.07477 3.10973 3.19971 3.21007 3.25977 3.45387 3.91993 4.16639 4.21115 4.34417 4.59049 4.74561 4.84505 4.93073 4.99318 5.01123 5.15720 5.20026 5.27805 5.31178 5.33078 5.40200 5.51536 5.61431 5.72559 5.78363 5.97765 6.00818 6.08658 6.19105 6.20527 6.33471 6.48250 6.57486 6.59846 6.75836 6.91643 7.03013 7.13411 7.18018 7.34502 7.56117 7.61969 7.86759 8.35740 8.37850 8.69052 9.05314 9.27889 10.71932 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003318 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.483675 B = 8436.096281 C = 9941.272025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.063 3.937 4 C -0.158 4.158 5 C -0.123 4.123 6 C 0.182 3.818 7 N -0.679 5.679 8 C 0.710 3.290 9 O -0.599 6.599 10 N -0.604 5.604 11 C 0.237 3.763 12 C -0.537 4.537 13 H 0.062 0.938 14 C 0.069 3.931 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.182 3.818 21 C -0.144 4.144 22 C -0.035 4.035 23 C -0.183 4.183 24 C 0.088 3.912 25 N -0.496 5.496 26 C 0.116 3.884 27 C -0.124 4.124 28 C 0.090 3.910 29 F -0.134 7.134 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.422 0.578 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.266 0.734 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.146 0.854 44 H 0.156 0.844 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 -8.140 1.085 8.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.016 3.984 4 C -0.178 4.178 5 C -0.144 4.144 6 C 0.085 3.915 7 N -0.328 5.328 8 C 0.412 3.588 9 O -0.479 6.479 10 N -0.337 5.337 11 C 0.117 3.883 12 C -0.576 4.576 13 H 0.080 0.920 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.198 1.198 20 C 0.057 3.943 21 C -0.147 4.147 22 C -0.061 4.061 23 C -0.203 4.203 24 C -0.069 4.069 25 N -0.205 5.205 26 C -0.041 4.041 27 C -0.146 4.146 28 C 0.070 3.930 29 F -0.112 7.112 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.262 0.738 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.173 0.827 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.653 -9.368 2.055 9.733 hybrid contribution -1.124 1.998 -0.341 2.318 sum -2.777 -7.370 1.715 8.061 Atomic orbital electron populations 1.23048 0.78488 1.03810 1.01378 1.86116 1.21232 1.25972 1.89463 1.18864 0.90656 0.85451 1.03406 1.20817 0.99899 0.90785 1.06254 1.20793 0.92646 0.98112 1.02889 1.17166 0.90645 0.84801 0.98935 1.42877 1.22539 1.10964 1.56411 1.15780 0.80258 0.83311 0.79432 1.90839 1.69023 1.41773 1.46264 1.47432 1.21456 1.13175 1.51644 1.19437 0.94760 0.83796 0.90316 1.21490 1.28559 1.10622 0.96881 0.91950 1.24904 0.96385 0.97238 0.94944 1.69910 1.43108 1.27515 1.12154 0.86589 0.80382 0.80644 0.80534 1.20395 1.21045 1.19835 1.20025 0.84927 1.01230 0.88093 1.21255 1.01664 0.94403 0.97426 1.21535 0.92708 0.95293 0.96610 1.22065 1.03112 1.00900 0.94211 1.22631 0.96239 0.88814 0.99189 1.67677 1.13168 1.16247 1.23414 1.22767 0.93593 1.00467 0.87301 1.21004 1.02177 0.88831 1.02553 1.16689 0.85631 0.82619 1.08083 1.91476 1.76717 1.48769 1.94259 0.88357 0.92613 0.92619 0.84422 0.84539 0.73788 0.94078 0.94963 0.92402 0.89607 0.89701 0.84508 0.85430 0.83645 0.82719 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.15 10.36 -19.82 -0.21 -4.35 16 3 C 0.06 0.90 6.69 -39.18 -0.26 0.63 16 4 C -0.16 -1.98 9.03 -39.47 -0.36 -2.33 16 5 C -0.12 -1.72 9.96 -39.40 -0.39 -2.11 16 6 C 0.18 2.98 6.28 -83.62 -0.53 2.45 16 7 N -0.68 -12.05 5.18 -14.19 -0.07 -12.12 16 8 C 0.71 13.78 8.01 -86.92 -0.70 13.09 16 9 O -0.60 -12.38 13.18 5.29 0.07 -12.31 16 10 N -0.60 -11.38 2.44 -182.19 -0.44 -11.82 16 11 C 0.24 4.94 4.93 -5.19 -0.03 4.91 16 12 C -0.54 -12.46 8.87 -34.44 -0.31 -12.76 16 13 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 14 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -22.40 13.29 55.43 0.74 -21.66 16 16 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C 0.18 3.00 5.60 -5.20 -0.03 2.97 16 21 C -0.14 -2.48 5.48 -104.49 -0.57 -3.06 16 22 C -0.03 -0.58 9.16 -39.28 -0.36 -0.94 16 23 C -0.18 -2.82 10.11 -39.44 -0.40 -3.22 16 24 C 0.09 1.39 11.18 -17.54 -0.20 1.19 16 25 N -0.50 -8.95 10.36 -13.25 -0.14 -9.09 16 26 C 0.12 2.09 10.86 -17.55 -0.19 1.90 16 27 C -0.12 -2.08 8.63 -39.35 -0.34 -2.42 16 28 C 0.09 1.45 7.31 -39.32 -0.29 1.17 16 29 F -0.13 -2.23 17.11 2.25 0.04 -2.19 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 33 H 0.14 1.29 6.29 -52.49 -0.33 0.96 16 34 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.42 7.46 6.63 -40.82 -0.27 7.19 16 36 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 37 H 0.03 0.70 6.45 -51.93 -0.33 0.36 16 38 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 39 H 0.09 1.35 7.37 -51.93 -0.38 0.97 16 40 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.16 2.82 7.62 -52.49 -0.40 2.42 16 45 H 0.16 2.77 6.42 -52.49 -0.34 2.43 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -28.79 388.30 -8.55 -37.33 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.32 Total: 11.69 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -4.04 Total: 4.26 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.08 Total: -54.69 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.14 Total: -16.66 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.79 -8.55 -37.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095413264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.052 kcal (2) G-P(sol) polarization free energy of solvation -28.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds