Wall clock time and date at job start Tue Mar 31 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36024 * 117.00313 * 2 1 4 4 C 1.38652 * 119.99360 * 359.97438 * 3 2 1 5 5 C 1.38128 * 120.03627 * 179.97438 * 4 3 2 6 6 C 1.38843 * 120.02632 * 0.02562 * 5 4 3 7 7 N 1.40140 * 120.00360 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99970 * 146.84576 * 7 6 5 9 9 O 1.21589 * 119.99885 * 354.63692 * 8 7 6 10 10 N 1.34777 * 119.99950 * 174.63344 * 8 7 6 11 11 C 1.46500 * 120.00172 * 0.02562 * 10 8 7 12 12 C 1.50698 * 109.47233 * 89.99533 * 11 10 8 13 13 H 1.08000 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00173 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99752 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00310 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46868 * 89.99674 * 16 14 12 18 18 H 1.48495 * 109.47292 * 209.99621 * 16 14 12 19 19 H 1.48500 * 109.46983 * 330.00060 * 16 14 12 20 20 C 1.46497 * 120.00147 * 180.27226 * 10 8 7 21 21 C 1.50694 * 109.47433 * 269.72934 * 20 10 8 22 22 C 1.38668 * 120.41994 * 269.71797 * 21 20 10 23 23 C 1.38636 * 118.42383 * 179.78287 * 22 21 20 24 24 C 1.38230 * 119.15471 * 0.51184 * 23 22 21 25 25 N 1.31856 * 120.76598 * 359.73139 * 24 23 22 26 26 C 1.31883 * 121.72514 * 359.97438 * 25 24 23 27 27 C 1.38813 * 119.98699 * 0.27451 * 6 5 4 28 28 C 1.38281 * 119.96199 * 359.45254 * 27 6 5 29 29 F 1.35096 * 120.01588 * 180.27127 * 28 27 6 30 30 H 1.08995 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47119 * 300.00498 * 1 2 3 32 32 H 1.09007 * 109.46505 * 60.00182 * 1 2 3 33 33 H 1.07996 * 119.97930 * 0.02562 * 4 3 2 34 34 H 1.08003 * 119.98750 * 179.97438 * 5 4 3 35 35 H 0.97006 * 120.00298 * 326.83591 * 7 6 5 36 36 H 1.08999 * 109.47253 * 209.99898 * 11 10 8 37 37 H 1.08996 * 109.47085 * 329.99724 * 11 10 8 38 38 H 0.97006 * 120.00352 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.46783 * 29.72869 * 20 10 8 40 40 H 1.09000 * 109.47096 * 149.72688 * 20 10 8 41 41 H 1.08000 * 120.79318 * 0.02562 * 22 21 20 42 42 H 1.07994 * 120.42116 * 180.22302 * 23 22 21 43 43 H 1.08000 * 119.61288 * 179.74934 * 24 23 22 44 44 H 1.07994 * 119.61371 * 180.02562 * 26 25 24 45 45 H 1.07996 * 120.02033 * 179.70053 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2914 2.3747 -0.0005 5 6 1.9177 3.6059 0.0000 6 6 3.3041 3.6802 0.0005 7 7 3.9390 4.9295 0.0016 8 6 5.1152 5.0871 0.6405 9 8 5.5775 4.1741 1.2970 10 7 5.7789 6.2568 0.5515 11 6 5.2216 7.3570 -0.2391 12 6 4.3433 8.2114 0.6381 13 1 4.2136 7.9603 1.6805 14 6 3.7053 9.3138 0.1100 15 7 3.8637 9.6199 -1.1591 16 14 2.6172 10.3734 1.1976 17 1 3.4327 11.4503 1.8144 18 1 1.5371 10.9784 0.3777 19 1 2.0170 9.5337 2.2653 20 6 7.0603 6.4261 1.2410 21 6 6.8176 6.9655 2.6271 22 6 6.7891 8.3333 2.8532 23 6 6.5579 8.7841 4.1437 24 6 6.3755 7.8615 5.1568 25 7 6.4143 6.5677 4.9057 26 6 6.6260 6.1032 3.6897 27 6 4.0612 2.5167 -0.0052 28 6 3.4338 1.2844 0.0000 29 9 4.1696 0.1514 -0.0001 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8901 33 1 0.2130 2.3178 -0.0005 34 1 1.3286 4.5112 -0.0008 35 1 3.5319 5.6809 -0.4576 36 1 6.0334 7.9632 -0.6410 37 1 4.6303 6.9514 -1.0600 38 1 3.4146 10.3952 -1.5308 39 1 7.5662 5.4630 1.3094 40 1 7.6835 7.1251 0.6832 41 1 6.9394 9.0310 2.0426 42 1 6.5254 9.8426 4.3556 43 1 6.1990 8.2045 6.1655 44 1 6.6504 5.0365 3.5226 45 1 5.1396 2.5738 -0.0097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095413264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:30 Heat of formation + Delta-G solvation = -51.386129 kcal Electronic energy + Delta-G solvation = -31989.057861 eV Core-core repulsion = 27500.463271 eV Total energy + Delta-G solvation = -4488.594590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -49.86563 -41.84724 -41.03138 -40.51765 -38.61923 -36.89819 -35.45268 -34.64867 -33.39216 -32.48688 -31.77622 -30.13943 -29.38079 -28.16233 -27.00382 -24.98411 -24.35939 -24.00935 -23.63837 -22.74031 -20.92711 -19.57705 -19.11229 -18.75468 -18.40964 -17.91748 -17.67387 -17.14371 -17.11937 -17.01990 -16.59178 -16.39306 -16.03785 -16.02892 -15.76226 -15.60504 -15.13911 -14.90039 -14.55708 -14.45242 -14.16561 -14.00409 -13.87344 -13.65565 -13.58896 -13.37827 -13.23677 -12.91426 -12.80413 -12.57609 -12.51479 -12.30940 -12.14917 -12.11211 -11.71805 -11.19931 -10.86721 -10.65705 -10.54679 -10.39095 -9.93973 -9.91393 -9.52365 -8.71998 -8.18228 -6.30302 0.06878 0.17218 0.20073 0.44697 1.38883 1.44951 1.51191 1.76100 2.06653 2.25197 2.40659 2.63812 2.85146 3.09080 3.13365 3.27228 3.60086 3.71816 3.91816 3.96867 3.99778 4.11282 4.16432 4.21523 4.39336 4.45263 4.45919 4.50312 4.60086 4.68886 4.76736 4.79653 4.85898 4.90928 4.93293 5.08759 5.12960 5.18803 5.29571 5.36374 5.44363 5.61904 5.76161 5.80540 5.87085 6.05403 6.09168 6.32363 6.70458 6.96810 7.07337 7.40434 7.57366 8.86382 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009546 B = 0.003318 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.483675 B = 8436.096281 C = 9941.272025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.332 6.332 3 C 0.071 3.929 4 C -0.144 4.144 5 C -0.114 4.114 6 C 0.156 3.844 7 N -0.677 5.677 8 C 0.704 3.296 9 O -0.616 6.616 10 N -0.604 5.604 11 C 0.251 3.749 12 C -0.527 4.527 13 H 0.046 0.954 14 C 0.035 3.965 15 N -0.913 5.913 16 Si 0.939 3.061 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.281 1.281 20 C 0.179 3.821 21 C -0.150 4.150 22 C -0.046 4.046 23 C -0.179 4.179 24 C 0.085 3.915 25 N -0.517 5.517 26 C 0.101 3.899 27 C -0.133 4.133 28 C 0.066 3.934 29 F -0.144 7.144 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.421 0.579 36 H 0.033 0.967 37 H 0.027 0.973 38 H 0.267 0.733 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.180 0.820 44 H 0.143 0.857 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -7.464 1.716 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.024 3.976 4 C -0.163 4.163 5 C -0.135 4.135 6 C 0.060 3.940 7 N -0.326 5.326 8 C 0.406 3.594 9 O -0.498 6.498 10 N -0.337 5.337 11 C 0.130 3.870 12 C -0.566 4.566 13 H 0.064 0.936 14 C -0.166 4.166 15 N -0.553 5.553 16 Si 0.766 3.234 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.207 1.207 20 C 0.055 3.945 21 C -0.153 4.153 22 C -0.072 4.072 23 C -0.199 4.199 24 C -0.072 4.072 25 N -0.227 5.227 26 C -0.056 4.056 27 C -0.155 4.155 28 C 0.045 3.955 29 F -0.123 7.123 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.196 0.804 34 H 0.173 0.827 35 H 0.261 0.739 36 H 0.051 0.949 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.197 0.803 44 H 0.160 0.840 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.718 -8.715 2.683 9.848 hybrid contribution -0.562 1.696 -0.502 1.856 sum -4.280 -7.019 2.181 8.505 Atomic orbital electron populations 1.23454 0.75693 1.05909 1.02843 1.86113 1.24105 1.25398 1.89053 1.18956 0.90042 0.86682 1.01930 1.21196 1.01666 0.89273 1.04140 1.21060 0.91542 0.99569 1.01322 1.17386 0.91770 0.83956 1.00918 1.42809 1.22108 1.11504 1.56144 1.15960 0.80740 0.83203 0.79523 1.90825 1.69602 1.42237 1.47110 1.47401 1.22069 1.12527 1.51665 1.19140 0.94045 0.83815 0.89972 1.21471 1.28387 1.10630 0.96102 0.93609 1.25380 0.97357 0.98163 0.95668 1.69975 1.44090 1.28049 1.13143 0.85841 0.79142 0.79383 0.79010 1.19873 1.20969 1.20671 1.20177 0.84220 1.01932 0.88128 1.21253 1.02001 0.94767 0.97262 1.21687 0.93031 0.94969 0.97530 1.22413 1.01579 1.02452 0.93411 1.23204 0.95129 0.87994 1.00888 1.67666 1.13880 1.17751 1.23366 1.22657 0.94808 1.00166 0.87928 1.20833 1.01340 0.89663 1.03671 1.16875 0.86780 0.82067 1.09757 1.91437 1.77176 1.49137 1.94516 0.86219 0.91252 0.90862 0.80415 0.82666 0.73899 0.94854 0.95499 0.92400 0.89354 0.87947 0.84328 0.82487 0.80345 0.83956 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -8.13 10.36 -93.83 -0.97 -9.10 16 3 C 0.07 1.93 6.69 22.53 0.15 2.08 16 4 C -0.14 -3.20 9.03 22.34 0.20 -3.00 16 5 C -0.11 -2.98 9.96 22.39 0.22 -2.76 16 6 C 0.16 5.14 6.28 38.09 0.24 5.38 16 7 N -0.68 -24.45 5.18 -317.08 -1.64 -26.09 16 8 C 0.70 28.10 8.01 179.05 1.44 29.53 16 9 O -0.62 -26.56 13.18 -4.00 -0.05 -26.61 16 10 N -0.60 -23.14 2.44 -848.59 -2.07 -25.21 16 11 C 0.25 10.52 4.93 85.63 0.42 10.95 16 12 C -0.53 -24.26 8.87 25.60 0.23 -24.03 16 13 H 0.05 2.26 7.63 -2.91 -0.02 2.24 16 14 C 0.04 1.68 5.46 84.66 0.46 2.14 16 15 N -0.91 -45.46 13.29 21.45 0.28 -45.18 16 16 Si 0.94 38.93 29.54 68.60 2.03 40.96 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.18 6.01 5.60 85.63 0.48 6.49 16 21 C -0.15 -5.18 5.48 -19.78 -0.11 -5.29 16 22 C -0.05 -1.48 9.16 22.47 0.21 -1.27 16 23 C -0.18 -5.15 10.11 22.36 0.23 -4.92 16 24 C 0.08 2.52 11.18 84.69 0.95 3.46 16 25 N -0.52 -18.46 10.36 -195.84 -2.03 -20.49 16 26 C 0.10 3.71 10.86 84.67 0.92 4.63 16 27 C -0.13 -4.64 8.63 22.42 0.19 -4.45 16 28 C 0.07 2.15 7.31 22.44 0.16 2.31 16 29 F -0.14 -4.98 17.11 44.97 0.77 -4.22 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.74 7.66 -2.39 -0.02 0.72 16 32 H 0.07 0.72 7.66 -2.38 -0.02 0.71 16 33 H 0.18 2.49 6.29 -2.91 -0.02 2.47 16 34 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.42 15.03 6.63 -92.70 -0.61 14.41 16 36 H 0.03 1.46 7.89 -2.39 -0.02 1.44 16 37 H 0.03 1.17 6.45 -2.39 -0.02 1.16 16 38 H 0.27 12.80 8.31 -92.70 -0.77 12.03 16 39 H 0.09 2.89 7.37 -2.38 -0.02 2.88 16 40 H 0.10 3.01 7.84 -2.39 -0.02 2.99 16 41 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.18 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.14 5.46 7.62 -2.91 -0.02 5.44 16 45 H 0.13 5.16 6.42 -2.91 -0.02 5.14 16 Total: -1.00 -62.27 388.30 4.25 -58.02 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.43 Total: 35.36 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 7.50 Total: 22.56 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -5.46 Total: -116.97 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.02 Total: -35.71 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.77 Total: -4.22 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -62.27 4.25 -58.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095413264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.635 kcal (2) G-P(sol) polarization free energy of solvation -62.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds