Wall clock time and date at job start Tue Mar 31 2020 05:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35947 * 116.99924 * 2 1 4 4 C 1.38746 * 119.99933 * 0.02562 * 3 2 1 5 5 C 1.38223 * 120.09702 * 180.02562 * 4 3 2 6 6 C 1.38306 * 120.09497 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.99399 * 180.02562 * 6 5 4 8 8 C 1.39040 * 120.00267 * 0.02562 * 6 5 4 9 9 N 1.40068 * 120.04980 * 179.97438 * 8 6 5 10 10 C 1.34768 * 120.00348 * 214.94533 * 9 8 6 11 11 O 1.21596 * 120.00029 * 355.55847 * 10 9 8 12 12 N 1.34778 * 120.00223 * 175.56004 * 10 9 8 13 13 C 1.46504 * 119.99821 * 359.97438 * 12 10 9 14 14 C 1.50695 * 109.47017 * 270.00209 * 13 12 10 15 15 H 1.07998 * 120.00322 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00142 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46922 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47446 * 119.99741 * 18 16 14 21 21 H 1.48501 * 109.47317 * 240.00214 * 18 16 14 22 22 C 1.46502 * 120.00061 * 180.02562 * 12 10 9 23 23 C 1.50694 * 109.47154 * 270.00035 * 22 12 10 24 24 C 1.38228 * 119.62238 * 95.02138 * 23 22 12 25 25 C 1.38623 * 119.16441 * 179.74839 * 24 23 22 26 26 C 1.38679 * 118.42028 * 0.47256 * 25 24 23 27 27 C 1.38185 * 119.15870 * 359.50594 * 26 25 24 28 28 N 1.31858 * 119.61770 * 274.99876 * 23 22 12 29 29 C 1.38603 * 119.99814 * 180.25877 * 3 2 1 30 30 H 1.08999 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46678 * 299.99554 * 1 2 3 32 32 H 1.08990 * 109.47125 * 59.99785 * 1 2 3 33 33 H 1.07998 * 119.95524 * 359.97438 * 4 3 2 34 34 H 1.08005 * 119.95052 * 179.97438 * 5 4 3 35 35 H 0.97007 * 119.99761 * 34.94995 * 9 8 6 36 36 H 1.09001 * 109.47005 * 30.00612 * 13 12 10 37 37 H 1.09000 * 109.46883 * 150.00318 * 13 12 10 38 38 H 0.97001 * 120.00519 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.46825 * 149.99987 * 22 12 10 40 40 H 1.08997 * 109.47090 * 30.00150 * 22 12 10 41 41 H 1.08005 * 120.41377 * 359.95187 * 24 23 22 42 42 H 1.07998 * 120.79557 * 180.23106 * 25 24 23 43 43 H 1.07993 * 120.42048 * 179.78385 * 26 25 24 44 44 H 1.07997 * 119.61383 * 180.25609 * 27 26 25 45 45 H 1.08000 * 120.05005 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2905 2.3749 0.0005 5 6 1.9159 3.6076 0.0000 6 6 3.2968 3.6846 -0.0005 7 9 3.9060 4.8905 -0.0005 8 6 4.0581 2.5211 -0.0011 9 7 5.4566 2.5980 -0.0022 10 6 6.1815 1.6797 -0.6712 11 8 5.6267 0.7392 -1.2062 12 7 7.5214 1.8038 -0.7473 13 6 8.1898 2.9372 -0.1032 14 6 8.2809 4.0852 -1.0752 15 1 7.8806 3.9811 -2.0728 16 6 8.8754 5.2684 -0.6909 17 7 9.3633 5.3950 0.5238 18 14 8.9890 6.6912 -1.8959 19 1 8.3717 6.2963 -3.1876 20 1 8.2706 7.8672 -1.3425 21 1 10.4153 7.0409 -2.1160 22 6 8.3093 0.8059 -1.4750 23 6 8.7176 -0.2967 -0.5324 24 6 7.9502 -1.4433 -0.4490 25 6 8.3374 -2.4538 0.4175 26 6 9.4818 -2.2682 1.1784 27 6 10.1988 -1.0949 1.0411 28 7 9.8030 -0.1566 0.2030 29 6 3.4303 1.2838 -0.0054 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 0.2121 2.3175 0.0005 34 1 1.3253 4.5118 0.0000 35 1 5.9035 3.3122 0.4787 36 1 7.6184 3.2465 0.7720 37 1 9.1928 2.6408 0.2040 38 1 9.7819 6.2272 0.7941 39 1 9.2001 1.2780 -1.8894 40 1 7.7095 0.3888 -2.2839 41 1 7.0619 -1.5520 -1.0537 42 1 7.7595 -3.3623 0.5009 43 1 9.8111 -3.0329 1.8663 44 1 11.0934 -0.9445 1.6270 45 1 4.0193 0.3786 -0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095416139.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:35 Heat of formation + Delta-G solvation = -32.503928 kcal Electronic energy + Delta-G solvation = -32072.229275 eV Core-core repulsion = 27584.453478 eV Total energy + Delta-G solvation = -4487.775796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.47199 -40.47396 -39.95051 -39.31975 -37.21300 -35.24749 -34.26459 -32.76963 -32.18517 -31.45154 -30.37830 -28.88613 -27.60104 -27.22977 -25.96631 -23.42253 -23.22193 -22.82363 -22.18717 -21.47536 -19.47750 -18.54381 -17.43955 -17.10432 -16.88522 -16.50044 -16.34334 -16.08391 -15.86929 -15.74310 -15.29122 -15.18818 -14.92576 -14.57639 -14.52708 -14.19301 -13.70866 -13.56430 -13.20375 -13.01144 -12.89503 -12.79802 -12.67509 -12.44102 -12.31593 -12.05025 -11.69075 -11.55731 -11.30261 -11.12067 -10.97499 -10.93121 -10.73243 -10.21647 -10.02591 -9.79029 -9.64595 -9.48036 -9.15666 -8.79977 -8.54624 -8.31028 -7.93763 -7.62417 -6.16407 -4.24218 1.25083 1.32839 1.37141 1.52142 3.01472 3.25500 3.31235 3.34002 3.39539 3.51389 3.89369 4.08170 4.33943 4.48162 4.57984 4.68995 4.73274 4.94117 4.98320 5.01794 5.04082 5.04868 5.17569 5.26400 5.31555 5.38970 5.41688 5.47706 5.75091 5.78893 5.91692 6.02030 6.11924 6.21722 6.31725 6.35645 6.37660 6.39862 6.52831 6.67679 6.92514 7.07624 7.12672 7.25911 7.41511 7.66750 7.78450 8.04135 8.30167 8.43944 8.82969 9.08946 9.44283 10.90277 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.006397 B = 0.004577 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4376.211423 B = 6115.465082 C = 9925.710743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.133 3.867 4 C -0.210 4.210 5 C -0.097 4.097 6 C 0.031 3.969 7 F -0.133 7.133 8 C 0.192 3.808 9 N -0.676 5.676 10 C 0.711 3.289 11 O -0.599 6.599 12 N -0.597 5.597 13 C 0.239 3.761 14 C -0.540 4.540 15 H 0.063 0.937 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.185 3.815 23 C 0.117 3.883 24 C -0.150 4.150 25 C -0.084 4.084 26 C -0.181 4.181 27 C 0.094 3.906 28 N -0.463 5.463 29 C -0.133 4.133 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.423 0.577 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.265 0.735 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.152 0.848 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -11.788 1.848 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.226 6.226 3 C 0.087 3.913 4 C -0.229 4.229 5 C -0.117 4.117 6 C 0.009 3.991 7 F -0.112 7.112 8 C 0.093 3.907 9 N -0.324 5.324 10 C 0.413 3.587 11 O -0.479 6.479 12 N -0.330 5.330 13 C 0.119 3.881 14 C -0.579 4.579 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.209 1.209 22 C 0.060 3.940 23 C -0.022 4.022 24 C -0.170 4.170 25 C -0.110 4.110 26 C -0.201 4.201 27 C -0.064 4.064 28 N -0.173 5.173 29 C -0.154 4.154 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.169 0.831 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.331 -11.668 1.489 16.333 hybrid contribution -0.227 0.909 -0.099 0.942 sum -11.558 -10.759 1.390 15.851 Atomic orbital electron populations 1.23040 0.78681 1.03749 1.01279 1.86101 1.21044 1.26691 1.88786 1.18751 0.91755 0.84116 0.96708 1.20924 0.99968 0.91328 1.10723 1.20652 0.91810 0.98611 1.00584 1.17415 0.90697 0.79829 1.11151 1.91528 1.83369 1.41800 1.94453 1.17232 0.83080 0.91864 0.98523 1.42765 1.03067 1.32734 1.53881 1.15757 0.82150 0.81848 0.78905 1.90804 1.70663 1.33601 1.52871 1.47352 1.03358 1.26709 1.55553 1.19458 0.94212 0.82057 0.92362 1.21516 1.39312 0.97431 0.99603 0.91907 1.24924 0.94768 0.98579 0.95340 1.69933 1.38318 1.26721 1.17673 0.86451 0.77776 0.82036 0.81292 1.19656 1.20831 1.20853 1.20060 0.96389 0.86326 0.91184 1.21918 0.90312 0.94511 0.95438 1.22143 1.00738 0.94244 0.99885 1.21550 0.95903 0.98791 0.94765 1.22093 0.97088 0.99586 1.01318 1.22759 0.98951 0.89400 0.95257 1.67596 1.14672 1.30095 1.04907 1.20398 0.91379 0.98132 1.05515 0.88418 0.92703 0.92673 0.84930 0.84411 0.73590 0.95671 0.92881 0.92552 0.88241 0.89010 0.84288 0.85291 0.85335 0.83079 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.08 10.50 -19.57 -0.21 -4.29 16 3 C 0.13 1.91 6.68 -39.26 -0.26 1.65 16 4 C -0.21 -2.56 9.03 -39.40 -0.36 -2.91 16 5 C -0.10 -1.29 10.01 -39.56 -0.40 -1.69 16 6 C 0.03 0.53 7.31 -39.26 -0.29 0.24 16 7 F -0.13 -2.45 16.95 2.25 0.04 -2.41 16 8 C 0.19 3.48 6.31 -83.61 -0.53 2.95 16 9 N -0.68 -13.55 5.10 -14.18 -0.07 -13.62 16 10 C 0.71 14.98 8.12 -86.92 -0.71 14.27 16 11 O -0.60 -12.76 13.29 5.28 0.07 -12.69 16 12 N -0.60 -12.65 2.44 -182.19 -0.44 -13.10 16 13 C 0.24 5.74 4.97 -5.19 -0.03 5.71 16 14 C -0.54 -14.16 9.39 -34.44 -0.32 -14.48 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.71 13.29 55.43 0.74 -23.97 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.19 3.47 5.71 -5.20 -0.03 3.44 16 23 C 0.12 2.06 6.36 -82.59 -0.53 1.54 16 24 C -0.15 -2.30 9.72 -39.44 -0.38 -2.68 16 25 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 26 C -0.18 -2.23 10.11 -39.44 -0.40 -2.63 16 27 C 0.09 1.36 11.18 -17.55 -0.20 1.16 16 28 N -0.46 -8.31 10.27 -9.48 -0.10 -8.41 16 29 C -0.13 -2.26 8.63 -39.26 -0.34 -2.60 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 32 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 33 H 0.13 1.18 6.29 -52.49 -0.33 0.85 16 34 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.42 8.79 6.36 -40.82 -0.26 8.53 16 36 H 0.03 0.63 6.30 -51.93 -0.33 0.30 16 37 H 0.05 1.38 8.07 -51.93 -0.42 0.96 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.10 1.89 8.07 -51.93 -0.42 1.47 16 40 H 0.09 1.61 7.32 -51.93 -0.38 1.23 16 41 H 0.14 2.10 8.01 -52.48 -0.42 1.68 16 42 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.16 2.94 6.20 -52.49 -0.33 2.61 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -31.13 390.12 -8.71 -39.84 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.34 Total: 11.35 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -4.26 Total: 5.41 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.12 Total: -59.10 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.14 Total: -16.97 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.13 -8.71 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095416139.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.339 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds