Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34509 * 125.78911 * 2 1 4 4 C 1.41380 * 106.84317 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.84142 * 0.02562 * 4 3 2 6 6 S 1.76202 * 125.79378 * 180.02562 * 5 4 3 7 7 O 1.42096 * 106.40195 * 336.45898 * 6 5 4 8 8 O 1.42099 * 106.40107 * 203.54335 * 6 5 4 9 9 N 1.65600 * 107.21976 * 90.00028 * 6 5 4 10 10 C 1.38498 * 119.99580 * 65.00288 * 9 6 5 11 11 N 1.30021 * 125.36240 * 179.97438 * 10 9 6 12 12 C 1.31726 * 117.08379 * 180.02562 * 11 10 9 13 13 C 1.50698 * 122.22602 * 180.26789 * 12 11 10 14 14 C 1.34564 * 115.54542 * 0.02562 * 12 11 10 15 15 S 1.76202 * 125.90933 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99551 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00297 * 0.02562 * 16 15 14 18 18 C 1.38381 * 119.99776 * 179.97438 * 16 15 14 19 19 N 1.31845 * 120.00181 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46822 * 89.99829 * 20 18 16 22 22 H 1.48492 * 109.47337 * 210.00312 * 20 18 16 23 23 H 1.48505 * 109.47122 * 330.00406 * 20 18 16 24 24 S 1.76131 * 125.37171 * 0.02562 * 10 9 6 25 25 O 1.34305 * 125.79014 * 180.36114 * 2 1 3 26 26 H 1.08994 * 109.47556 * 89.99871 * 1 2 3 27 27 H 1.09005 * 109.46814 * 209.99628 * 1 2 3 28 28 H 1.09005 * 109.46771 * 329.99188 * 1 2 3 29 29 H 1.08000 * 126.58043 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58589 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99800 * 245.00066 * 9 6 5 32 32 H 1.09004 * 109.47227 * 269.71528 * 13 12 11 33 33 H 1.09000 * 109.47046 * 29.71354 * 13 12 11 34 34 H 1.09003 * 109.47185 * 149.71274 * 13 12 11 35 35 H 0.96997 * 120.00575 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 16 4.9718 -1.7945 -0.0019 7 8 6.0562 -1.0544 -0.5456 8 8 4.5209 -3.0267 -0.5474 9 7 5.3583 -2.0967 1.5797 10 6 4.4701 -2.7836 2.3905 11 7 4.6659 -3.0771 3.6419 12 6 3.7088 -3.7383 4.2598 13 6 3.8117 -4.1325 5.7107 14 6 2.6308 -4.0339 3.5106 15 16 1.1997 -4.9046 4.0571 16 6 0.2552 -4.9048 2.5696 17 1 0.6489 -4.4360 1.6799 18 6 -0.9906 -5.5066 2.5411 19 7 -1.4710 -6.0794 3.6271 20 14 -1.9916 -5.5075 0.9640 21 1 -1.6632 -6.7188 0.1700 22 1 -3.4389 -5.5108 1.2963 23 1 -1.6683 -4.2938 0.1718 24 16 2.8977 -3.3984 1.8886 25 8 2.2924 -1.0894 -0.0069 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 -0.0012 31 1 6.2068 -1.7926 1.9383 32 1 4.2700 -5.1185 5.7877 33 1 4.4245 -3.4045 6.2423 34 1 2.8151 -4.1595 6.1514 35 1 -2.3444 -6.5009 3.6073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095459492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -13.985849 kcal Electronic energy + Delta-G solvation = -25305.554894 eV Core-core repulsion = 21457.774154 eV Total energy + Delta-G solvation = -3847.780739 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.010 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.76730 -38.93987 -37.58961 -36.20673 -35.23116 -33.45419 -32.91788 -32.23969 -30.35780 -27.25429 -27.17334 -25.87237 -23.51203 -22.38324 -21.35431 -20.52141 -19.63761 -18.86050 -18.27438 -17.72344 -17.11652 -16.33119 -15.97827 -15.56913 -15.37529 -15.20035 -14.55172 -14.39254 -13.96724 -13.45463 -13.38810 -13.18074 -13.12620 -13.00774 -12.64940 -12.54149 -12.41020 -12.28378 -12.22500 -11.95726 -11.63617 -11.48833 -11.35840 -11.15500 -11.04659 -10.71769 -10.37197 -10.26801 -9.72480 -9.25589 -9.06846 -8.93482 -8.83305 -7.98738 -6.69643 -6.64330 -4.38546 -0.15490 0.98833 1.33097 1.53840 2.10562 2.21278 2.58623 2.85205 2.97097 3.02555 3.09739 3.21582 3.30382 3.47565 3.87768 4.20727 4.52495 4.64194 4.73347 4.92139 4.95708 5.16899 5.23266 5.30458 5.41792 5.47126 5.48957 5.77908 5.88303 6.16840 6.17078 6.20148 6.37195 6.61271 6.72188 6.99544 7.23539 7.94174 8.35599 8.78720 10.36077 Molecular weight = 360.01amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.004986 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.391843 B = 5614.645123 C = 7307.023137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.057 3.943 3 C -0.241 4.241 4 C -0.073 4.073 5 C -0.595 4.595 6 S 2.717 3.283 7 O -0.928 6.928 8 O -0.912 6.912 9 N -0.997 5.997 10 C 0.208 3.792 11 N -0.461 5.461 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.217 4.217 15 S 0.161 5.839 16 C -0.559 4.559 17 H 0.090 0.910 18 C 0.083 3.917 19 N -0.861 5.861 20 Si 0.924 3.076 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.265 1.265 24 S 0.137 5.863 25 O -0.104 6.104 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.159 0.841 30 H 0.166 0.834 31 H 0.431 0.569 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 12.175 -4.290 14.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 C -0.261 4.261 4 C -0.094 4.094 5 C -0.727 4.727 6 S 2.800 3.200 7 O -0.918 6.918 8 O -0.902 6.902 9 N -0.754 5.754 10 C -0.167 4.167 11 N -0.181 5.181 12 C -0.125 4.125 13 C -0.121 4.121 14 C -0.454 4.454 15 S 0.412 5.588 16 C -0.707 4.707 17 H 0.108 0.892 18 C -0.128 4.128 19 N -0.493 5.493 20 Si 0.748 3.252 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.189 1.189 24 S 0.380 5.620 25 O 0.003 5.997 26 H 0.109 0.891 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.177 0.823 30 H 0.183 0.817 31 H 0.270 0.730 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.375 11.000 -4.610 13.082 hybrid contribution -0.151 1.231 -0.858 1.508 sum 5.224 12.231 -5.468 14.380 Atomic orbital electron populations 1.20581 0.84128 1.05544 1.04407 1.23289 0.95081 0.84868 0.96628 1.21762 0.92026 1.00048 1.12247 1.21903 0.99507 0.92571 0.95426 1.35353 1.00056 1.11122 1.26146 1.01832 0.72706 0.73846 0.71593 1.93675 1.49545 1.73871 1.74686 1.93686 1.81482 1.40698 1.74322 1.52608 1.26595 1.66130 1.30025 1.23378 0.95603 1.05336 0.92350 1.65924 1.31025 1.15831 1.05305 1.19160 0.89501 1.05735 0.98138 1.20139 1.02451 1.00898 0.88624 1.28394 1.07780 1.11206 0.98061 1.83137 1.02104 1.57268 1.16283 1.23269 1.05444 1.44061 0.97971 0.89195 1.25022 0.96409 0.93153 0.98225 1.70014 1.19022 1.32700 1.27599 0.86046 0.78446 0.79695 0.81005 1.19441 1.20222 1.18872 1.85580 1.10164 1.55163 1.11112 1.84311 1.13260 1.33192 1.68965 0.89060 0.88883 0.88588 0.82309 0.81676 0.73010 0.91563 0.91660 0.90894 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.42 36.01 0.38 -0.53 16 2 C 0.06 0.76 7.32 -35.63 -0.26 0.50 16 3 C -0.24 -2.78 10.81 -39.71 -0.43 -3.21 16 4 C -0.07 -0.90 10.63 -39.70 -0.42 -1.32 16 5 C -0.60 -8.87 6.84 29.42 0.20 -8.67 16 6 S 2.72 40.77 5.48 -107.50 -0.59 40.18 16 7 O -0.93 -13.61 17.83 -57.18 -1.02 -14.63 16 8 O -0.91 -16.59 16.43 -57.23 -0.94 -17.53 16 9 N -1.00 -14.78 5.85 30.82 0.18 -14.60 16 10 C 0.21 3.90 8.28 -87.52 -0.72 3.18 16 11 N -0.46 -9.04 10.56 -9.86 -0.10 -9.15 16 12 C 0.02 0.36 6.73 -83.94 -0.57 -0.20 16 13 C -0.06 -1.02 10.02 36.00 0.36 -0.66 16 14 C -0.22 -4.81 6.67 29.43 0.20 -4.62 16 15 S 0.16 3.85 20.74 -107.50 -2.23 1.62 16 16 C -0.56 -14.49 9.26 30.79 0.29 -14.20 16 17 H 0.09 2.31 5.97 -52.49 -0.31 1.99 16 18 C 0.08 2.12 5.49 -17.49 -0.10 2.03 16 19 N -0.86 -22.72 13.22 55.47 0.73 -21.99 16 20 Si 0.92 19.66 29.55 -169.99 -5.02 14.64 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 24 S 0.14 2.89 17.45 -107.50 -1.88 1.02 16 25 O -0.10 -1.70 9.35 5.69 0.05 -1.65 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.43 4.98 8.95 -34.47 -0.31 4.68 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.19 7.38 -51.93 -0.38 0.81 16 35 H 0.28 6.82 8.32 -40.82 -0.34 6.48 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -32.11 347.69 -9.75 -41.87 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -3.10 Total: 2.70 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -1.08 Total: -27.72 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.81 Total: -45.74 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.91 Total: -33.81 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -4.69 Total: 42.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.11 -9.75 -41.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095459492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.881 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds