Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34509 * 125.78911 * 2 1 4 4 C 1.41380 * 106.84317 * 180.02562 * 3 2 1 5 5 C 1.34512 * 106.84142 * 0.02562 * 4 3 2 6 6 S 1.76202 * 125.79378 * 180.02562 * 5 4 3 7 7 O 1.42096 * 106.40195 * 336.45898 * 6 5 4 8 8 O 1.42099 * 106.40107 * 203.54335 * 6 5 4 9 9 N 1.65600 * 107.21976 * 90.00028 * 6 5 4 10 10 C 1.38498 * 119.99580 * 65.00288 * 9 6 5 11 11 N 1.30021 * 125.36240 * 179.97438 * 10 9 6 12 12 C 1.31726 * 117.08379 * 180.02562 * 11 10 9 13 13 C 1.50698 * 122.22602 * 180.26789 * 12 11 10 14 14 C 1.34564 * 115.54542 * 0.02562 * 12 11 10 15 15 S 1.76202 * 125.90933 * 180.02562 * 14 12 11 16 16 C 1.76205 * 99.99551 * 179.97438 * 15 14 12 17 17 H 1.07994 * 120.00297 * 0.02562 * 16 15 14 18 18 C 1.38381 * 119.99776 * 179.97438 * 16 15 14 19 19 N 1.31845 * 120.00181 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46822 * 89.99829 * 20 18 16 22 22 H 1.48492 * 109.47337 * 210.00312 * 20 18 16 23 23 H 1.48505 * 109.47122 * 330.00406 * 20 18 16 24 24 S 1.76131 * 125.37171 * 0.02562 * 10 9 6 25 25 O 1.34305 * 125.79014 * 180.36114 * 2 1 3 26 26 H 1.08994 * 109.47556 * 89.99871 * 1 2 3 27 27 H 1.09005 * 109.46814 * 209.99628 * 1 2 3 28 28 H 1.09005 * 109.46771 * 329.99188 * 1 2 3 29 29 H 1.08000 * 126.58043 * 0.02562 * 3 2 1 30 30 H 1.08000 * 126.58589 * 179.97438 * 4 3 2 31 31 H 0.96996 * 119.99800 * 245.00066 * 9 6 5 32 32 H 1.09004 * 109.47227 * 269.71528 * 13 12 11 33 33 H 1.09000 * 109.47046 * 29.71354 * 13 12 11 34 34 H 1.09003 * 109.47185 * 149.71274 * 13 12 11 35 35 H 0.96997 * 120.00575 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0015 6 16 4.9718 -1.7945 -0.0019 7 8 6.0562 -1.0544 -0.5456 8 8 4.5209 -3.0267 -0.5474 9 7 5.3583 -2.0967 1.5797 10 6 4.4701 -2.7836 2.3905 11 7 4.6659 -3.0771 3.6419 12 6 3.7088 -3.7383 4.2598 13 6 3.8117 -4.1325 5.7107 14 6 2.6308 -4.0339 3.5106 15 16 1.1997 -4.9046 4.0571 16 6 0.2552 -4.9048 2.5696 17 1 0.6489 -4.4360 1.6799 18 6 -0.9906 -5.5066 2.5411 19 7 -1.4710 -6.0794 3.6271 20 14 -1.9916 -5.5075 0.9640 21 1 -1.6632 -6.7188 0.1700 22 1 -3.4389 -5.5108 1.2963 23 1 -1.6683 -4.2938 0.1718 24 16 2.8977 -3.3984 1.8886 25 8 2.2924 -1.0894 -0.0069 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.9665 2.1204 0.0004 30 1 4.5212 1.2433 -0.0012 31 1 6.2068 -1.7926 1.9383 32 1 4.2700 -5.1185 5.7877 33 1 4.4245 -3.4045 6.2423 34 1 2.8151 -4.1595 6.1514 35 1 -2.3444 -6.5009 3.6073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095459492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = -36.376526 kcal Electronic energy + Delta-G solvation = -25306.525826 eV Core-core repulsion = 21457.774154 eV Total energy + Delta-G solvation = -3848.751672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 360.010 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.78592 -40.55081 -38.85751 -37.50065 -36.65658 -34.81847 -34.44377 -33.15309 -31.84523 -28.85223 -28.11984 -27.73646 -25.02721 -23.39738 -22.42940 -21.94591 -20.99995 -20.09788 -19.93743 -19.05254 -18.58702 -17.65503 -17.35322 -17.07384 -16.73844 -16.55381 -16.06522 -16.03591 -15.02896 -14.97803 -14.59328 -14.25415 -14.06191 -14.00738 -13.92995 -13.87892 -13.70854 -13.62846 -13.44363 -13.27314 -13.16657 -13.07831 -12.89144 -12.73371 -12.47603 -12.27882 -12.04952 -11.46749 -11.26123 -10.98532 -10.68656 -10.59026 -10.02101 -9.63901 -8.58052 -8.44122 -6.31441 -1.37460 -0.28790 -0.10502 -0.03731 0.52385 1.19182 1.22725 1.34066 1.37311 1.41971 1.53297 1.77260 1.85561 2.12713 2.19279 2.81974 2.99698 3.06987 3.47085 3.62894 3.75078 4.06556 4.29602 4.38545 4.39564 4.52812 4.57465 4.65226 4.81256 4.86131 4.95073 4.97847 5.29605 5.31857 5.34159 5.59289 5.74717 6.01682 6.70928 6.86915 8.49435 Molecular weight = 360.01amu Principal moments of inertia in cm(-1) A = 0.009873 B = 0.004986 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.391843 B = 5614.645123 C = 7307.023137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.039 3.961 3 C -0.234 4.234 4 C -0.060 4.060 5 C -0.629 4.629 6 S 2.734 3.266 7 O -0.921 6.921 8 O -0.949 6.949 9 N -0.986 5.986 10 C 0.243 3.757 11 N -0.471 5.471 12 C 0.036 3.964 13 C -0.063 4.063 14 C -0.246 4.246 15 S 0.117 5.883 16 C -0.577 4.577 17 H 0.083 0.917 18 C 0.039 3.961 19 N -0.893 5.893 20 Si 0.979 3.021 21 H -0.268 1.268 22 H -0.263 1.263 23 H -0.259 1.259 24 S 0.111 5.889 25 O -0.139 6.139 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.196 0.804 30 H 0.197 0.803 31 H 0.448 0.552 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 14.688 -4.915 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.016 4.016 3 C -0.253 4.253 4 C -0.081 4.081 5 C -0.762 4.762 6 S 2.820 3.180 7 O -0.911 6.911 8 O -0.938 6.938 9 N -0.743 5.743 10 C -0.133 4.133 11 N -0.192 5.192 12 C -0.107 4.107 13 C -0.123 4.123 14 C -0.482 4.482 15 S 0.366 5.634 16 C -0.725 4.725 17 H 0.101 0.899 18 C -0.169 4.169 19 N -0.528 5.528 20 Si 0.800 3.200 21 H -0.194 1.194 22 H -0.188 1.188 23 H -0.183 1.183 24 S 0.354 5.646 25 O -0.034 6.034 26 H 0.128 0.872 27 H 0.088 0.912 28 H 0.144 0.856 29 H 0.213 0.787 30 H 0.214 0.786 31 H 0.290 0.710 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.456 13.531 -5.239 15.881 hybrid contribution -0.211 0.684 -0.731 1.023 sum 6.245 14.215 -5.970 16.634 Atomic orbital electron populations 1.20777 0.82439 1.05849 1.05726 1.24053 0.96369 0.84848 0.96314 1.22229 0.91201 1.01258 1.10655 1.22432 1.01175 0.91726 0.92805 1.35071 0.99702 1.12007 1.29399 1.01114 0.72587 0.73188 0.71113 1.93677 1.49583 1.73540 1.74319 1.93646 1.82142 1.43032 1.75021 1.52622 1.26864 1.65365 1.29483 1.23621 0.94748 1.02762 0.92144 1.66113 1.30718 1.16960 1.05365 1.19835 0.88388 1.02983 0.99449 1.20291 1.03184 1.02324 0.86463 1.28265 1.07997 1.13228 0.98731 1.82964 1.03745 1.60250 1.16481 1.23453 1.06214 1.44475 0.98395 0.89892 1.25838 0.97217 0.92715 1.01130 1.70089 1.19596 1.33790 1.29278 0.85218 0.77613 0.79712 0.77438 1.19351 1.18767 1.18271 1.85742 1.11880 1.55610 1.11350 1.84281 1.13996 1.34981 1.70134 0.87175 0.91157 0.85611 0.78663 0.78613 0.70953 0.90051 0.89282 0.90886 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 10.42 71.24 0.74 -0.97 16 2 C 0.04 0.98 7.32 24.83 0.18 1.16 16 3 C -0.23 -4.66 10.81 22.19 0.24 -4.42 16 4 C -0.06 -1.31 10.63 22.19 0.24 -1.08 16 5 C -0.63 -17.91 6.84 66.97 0.46 -17.45 16 6 S 2.73 78.89 5.48 -56.49 -0.31 78.58 16 7 O -0.92 -25.07 17.83 -128.00 -2.28 -27.35 16 8 O -0.95 -34.61 16.43 -127.95 -2.10 -36.71 16 9 N -0.99 -27.52 5.85 -56.40 -0.33 -27.85 16 10 C 0.24 8.87 8.28 179.26 1.48 10.35 16 11 N -0.47 -17.74 10.56 -185.12 -1.96 -19.69 16 12 C 0.04 1.41 6.73 41.73 0.28 1.70 16 13 C -0.06 -2.01 10.02 71.24 0.71 -1.30 16 14 C -0.25 -11.08 6.67 66.98 0.45 -10.64 16 15 S 0.12 5.82 20.74 -56.49 -1.17 4.64 16 16 C -0.58 -31.05 9.26 67.85 0.63 -30.42 16 17 H 0.08 4.44 5.97 -2.91 -0.02 4.43 16 18 C 0.04 2.02 5.49 84.72 0.46 2.49 16 19 N -0.89 -48.52 13.22 21.58 0.29 -48.23 16 20 Si 0.98 40.87 29.55 68.60 2.03 42.89 16 21 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 S 0.11 4.74 17.45 -56.49 -0.99 3.75 16 25 O -0.14 -4.49 9.35 -2.55 -0.02 -4.52 16 26 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 30 H 0.20 2.86 8.06 -2.91 -0.02 2.84 16 31 H 0.45 9.23 8.95 -96.75 -0.87 8.37 16 32 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.35 7.38 -2.39 -0.02 2.33 16 35 H 0.28 14.15 8.32 -92.71 -0.77 13.38 16 Total: -1.00 -70.97 347.69 -0.67 -71.63 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.30 Total: 13.42 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 5.88 Total: -50.56 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -2.00 Total: -95.78 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -4.41 Total: -68.58 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 89.44 SS G_CDS: -2.47 Total: 86.97 kcal Total: -70.97 -0.67 -71.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095459492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.257 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds