Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42909 * 109.47008 * 2 1 4 4 C 1.42901 * 113.99737 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.88938 * 18.64702 * 4 3 2 6 6 C 1.54150 * 113.80079 * 247.29510 * 4 3 2 7 7 C 1.53951 * 87.22757 * 220.83590 * 6 4 3 8 8 H 1.08997 * 113.65842 * 270.13985 * 7 6 4 9 9 N 1.46894 * 113.66628 * 139.17036 * 7 6 4 10 10 C 1.46898 * 111.00184 * 102.73943 * 9 7 6 11 11 H 1.09004 * 109.47151 * 327.14294 * 10 9 7 12 12 C 1.53004 * 109.46784 * 87.13779 * 10 9 7 13 13 C 1.50700 * 109.47252 * 185.97816 * 12 10 9 14 14 H 1.08007 * 119.99648 * 3.69891 * 13 12 10 15 15 C 1.37874 * 120.00350 * 183.69993 * 13 12 10 16 16 N 1.31515 * 119.99919 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99903 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.46745 * 89.99746 * 17 15 13 19 19 H 1.48496 * 109.47154 * 209.99932 * 17 15 13 20 20 H 1.48503 * 109.46966 * 330.00179 * 17 15 13 21 21 C 1.50694 * 109.47759 * 207.14010 * 10 9 7 22 22 C 1.38267 * 119.93998 * 319.72852 * 21 10 9 23 23 C 1.38149 * 120.05454 * 179.72037 * 22 21 10 24 24 C 1.38730 * 119.94093 * 0.57543 * 23 22 21 25 25 O 1.35907 * 120.05914 * 179.68056 * 24 23 22 26 26 C 1.42904 * 116.99481 * 0.02562 * 25 24 23 27 27 C 1.38735 * 119.89311 * 359.69694 * 24 23 22 28 28 C 1.38145 * 119.93911 * 0.02562 * 27 24 23 29 29 C 1.52908 * 113.66479 * 150.00064 * 4 3 2 30 30 C 1.52901 * 121.13382 * 265.18114 * 29 4 3 31 31 C 1.53954 * 86.78508 * 100.81815 * 30 29 4 32 32 C 1.52910 * 121.13195 * 13.73707 * 29 4 3 33 33 H 1.08997 * 109.47314 * 59.99960 * 1 2 3 34 34 H 1.08994 * 109.47055 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.46844 * 300.00326 * 1 2 3 36 36 H 1.08997 * 109.47467 * 240.00012 * 2 1 3 37 37 H 1.09001 * 109.47290 * 119.99522 * 2 1 3 38 38 H 1.08996 * 113.64010 * 106.25303 * 6 4 3 39 39 H 1.09010 * 113.57947 * 335.40544 * 6 4 3 40 40 H 1.00900 * 111.00088 * 226.69898 * 9 7 6 41 41 H 1.08994 * 109.47073 * 305.97829 * 12 10 9 42 42 H 1.08999 * 109.47152 * 65.97912 * 12 10 9 43 43 H 0.97006 * 119.99470 * 180.02562 * 16 15 13 44 44 H 1.08001 * 119.97718 * 359.97161 * 22 21 10 45 45 H 1.07994 * 120.03194 * 180.29844 * 23 22 21 46 46 H 1.08993 * 109.47048 * 300.00412 * 26 25 24 47 47 H 1.09000 * 109.47053 * 60.00352 * 26 25 24 48 48 H 1.08994 * 109.46750 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.03399 * 180.02562 * 27 24 23 50 50 H 1.08004 * 119.97026 * 179.97438 * 28 27 24 51 51 H 1.09005 * 113.66385 * 215.28963 * 30 29 4 52 52 H 1.09001 * 113.67015 * 346.34426 * 30 29 4 53 53 H 1.09006 * 113.57683 * 270.13130 * 31 30 29 54 54 H 1.08999 * 113.58327 * 139.33529 * 31 30 29 55 55 H 1.08997 * 113.66350 * 13.65864 * 32 29 4 56 56 H 1.09007 * 113.65926 * 144.62039 * 32 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9284 0.5452 -0.3220 6 6 4.0086 2.0518 1.3004 7 6 4.9825 2.8514 0.4160 8 1 5.9168 2.3287 0.2109 9 7 5.1886 4.2342 0.8667 10 6 6.4752 4.3754 1.5613 11 1 6.7058 3.4507 2.0905 12 6 7.5767 4.6668 0.5401 13 6 8.9157 4.6662 1.2316 14 1 8.9816 4.4182 2.2807 15 6 10.0567 4.9823 0.5250 16 7 11.2251 4.9822 1.1286 17 14 9.9427 5.4120 -1.2894 18 1 9.7430 6.8758 -1.4397 19 1 11.1984 5.0108 -1.9729 20 1 8.7958 4.6909 -1.8977 21 6 6.3916 5.5113 2.5479 22 6 5.7272 6.6747 2.2062 23 6 5.6441 7.7154 3.1109 24 6 6.2383 7.5970 4.3589 25 8 6.1637 8.6218 5.2485 26 6 5.4569 9.7919 4.8321 27 6 6.9093 6.4308 4.6974 28 6 6.9845 5.3908 3.7912 29 6 3.9466 2.7178 -0.7008 30 6 4.3677 2.6880 -2.1704 31 6 2.9996 3.3197 -2.4854 32 6 3.0053 3.8716 -1.0483 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0276 0.0005 35 1 -0.3633 0.5139 0.8900 36 1 1.8933 -0.5138 -0.8899 37 1 1.8933 -0.5138 0.8900 38 1 4.5006 1.3147 1.9349 39 1 3.3020 2.6769 1.8465 40 1 5.1218 4.8800 0.0943 41 1 7.5671 3.8993 -0.2337 42 1 7.4026 5.6424 0.0864 43 1 12.0278 5.2050 0.6315 44 1 5.2693 6.7685 1.2325 45 1 5.1210 8.6220 2.8454 46 1 5.9341 10.2082 3.9450 47 1 4.4247 9.5296 4.6001 48 1 5.4724 10.5301 5.6338 49 1 7.3723 6.3360 5.6685 50 1 7.5071 4.4829 4.0540 51 1 5.2125 3.3386 -2.3968 52 1 4.4874 1.6814 -2.5710 53 1 2.2130 2.5875 -2.6682 54 1 3.0429 4.0950 -3.2504 55 1 2.0366 3.8105 -0.5523 56 1 3.4667 4.8550 -0.9576 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095940795.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -33.019385 kcal Electronic energy + Delta-G solvation = -33329.129238 eV Core-core repulsion = 29204.164833 eV Total energy + Delta-G solvation = -4124.964405 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.225 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.77757 -40.94858 -39.02921 -38.09413 -36.78965 -35.28127 -34.29385 -32.01358 -31.89458 -30.92522 -30.36450 -28.12003 -26.66726 -26.11608 -25.39531 -24.24452 -23.76598 -23.49374 -22.90148 -21.69158 -21.14338 -19.14220 -19.01691 -18.82483 -17.90703 -17.27259 -16.93502 -16.61826 -16.54005 -16.45416 -16.28524 -15.83844 -15.68708 -15.43644 -15.07108 -14.73066 -14.45257 -14.33661 -14.22459 -13.89482 -13.84986 -13.57298 -13.45266 -13.32366 -13.20203 -13.04458 -12.83137 -12.76823 -12.72899 -12.64906 -12.35365 -12.21337 -12.08954 -11.94843 -11.87823 -11.73215 -11.68111 -11.52786 -11.32908 -11.17458 -11.04651 -10.80260 -10.74043 -10.18179 -9.77535 -9.26976 -8.81034 -8.24612 -6.26168 0.56867 0.66274 1.32696 1.33549 1.43673 2.35607 2.48493 2.68416 2.96713 3.11320 3.32786 3.53057 3.64112 3.72245 3.90591 3.91229 3.98519 4.01144 4.07072 4.21561 4.23567 4.28115 4.36283 4.44201 4.44903 4.48300 4.54264 4.55771 4.60256 4.62024 4.65982 4.74216 4.77339 4.78860 4.87478 4.89055 4.91805 4.96992 5.07879 5.08456 5.11207 5.12433 5.18825 5.22399 5.29174 5.31439 5.36506 5.46116 5.52779 5.58304 5.61946 5.65570 5.88259 5.98761 6.19707 6.39119 6.41391 6.55095 6.58641 6.81885 7.36605 8.91693 Molecular weight = 359.22amu Principal moments of inertia in cm(-1) A = 0.007260 B = 0.003432 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3855.957957 B = 8156.544189 C =10597.606442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.380 6.380 4 C 0.097 3.903 5 H 0.096 0.904 6 C -0.133 4.133 7 C 0.068 3.932 8 H 0.061 0.939 9 N -0.656 5.656 10 C 0.151 3.849 11 H 0.062 0.938 12 C -0.021 4.021 13 C -0.508 4.508 14 H 0.043 0.957 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.939 3.061 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.247 1.247 21 C -0.078 4.078 22 C -0.071 4.071 23 C -0.208 4.208 24 C 0.103 3.897 25 O -0.339 6.339 26 C 0.020 3.980 27 C -0.167 4.167 28 C -0.081 4.081 29 C -0.098 4.098 30 C -0.133 4.133 31 C -0.126 4.126 32 C -0.097 4.097 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.340 0.660 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.262 0.738 44 H 0.133 0.867 45 H 0.149 0.851 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.120 0.880 49 H 0.128 0.872 50 H 0.113 0.887 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.082 0.918 54 H 0.072 0.928 55 H 0.068 0.932 56 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.000 -2.468 -3.414 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.299 6.299 4 C 0.038 3.962 5 H 0.114 0.886 6 C -0.172 4.172 7 C -0.043 4.043 8 H 0.079 0.921 9 N -0.286 5.286 10 C 0.041 3.959 11 H 0.080 0.920 12 C -0.060 4.060 13 C -0.547 4.547 14 H 0.062 0.938 15 C -0.189 4.189 16 N -0.592 5.592 17 Si 0.763 3.237 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.171 1.171 21 C -0.079 4.079 22 C -0.090 4.090 23 C -0.226 4.226 24 C 0.058 3.942 25 O -0.253 6.253 26 C -0.075 4.075 27 C -0.186 4.186 28 C -0.100 4.100 29 C -0.098 4.098 30 C -0.171 4.171 31 C -0.163 4.163 32 C -0.134 4.134 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.160 0.840 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.151 0.849 45 H 0.167 0.833 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.138 0.862 49 H 0.146 0.854 50 H 0.131 0.869 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.100 0.900 54 H 0.091 0.909 55 H 0.087 0.913 56 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.265 -2.352 -2.676 22.549 hybrid contribution 1.783 -0.042 -1.233 2.169 sum -20.482 -2.393 -3.910 20.989 Atomic orbital electron populations 1.21735 0.92938 1.03154 1.02608 1.22686 0.96320 0.83401 1.00466 1.87933 1.20229 1.27247 1.94535 1.23137 0.81185 0.96417 0.95436 0.88596 1.23484 0.98129 0.98774 0.96819 1.22537 0.95863 0.89969 0.95904 0.92063 1.60785 1.31721 1.05128 1.30931 1.20157 0.87254 0.95333 0.93171 0.91951 1.20097 0.94464 0.96095 0.95361 1.21305 0.91239 1.45062 0.97099 0.93830 1.25870 0.95025 0.95330 1.02694 1.70066 0.99152 1.51521 1.38425 0.85831 0.78057 0.79147 0.80635 1.19751 1.21500 1.17053 1.19624 0.98035 0.96097 0.94145 1.20802 0.97083 0.91799 0.99275 1.21360 1.05970 1.01552 0.93756 1.19020 0.97133 0.88453 0.89575 1.86006 1.73161 1.24949 1.41193 1.23297 0.96248 0.85067 1.02841 1.20437 1.04113 0.92695 1.01344 1.20818 0.97388 0.98363 0.93415 1.23014 0.96285 0.97215 0.93317 1.22820 0.97973 1.01545 0.94730 1.22738 0.96666 1.00235 0.96652 1.22304 0.98726 0.96353 0.96063 0.92169 0.89429 0.92543 0.92683 0.93189 0.91653 0.89723 0.84007 0.96544 0.96460 0.92882 0.84881 0.83320 0.92394 0.91588 0.86218 0.85382 0.86900 0.90672 0.90983 0.89955 0.90901 0.91336 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.05 0.78 6.50 71.98 0.47 1.25 16 3 O -0.38 -8.37 9.55 -148.98 -1.42 -9.79 16 4 C 0.10 2.15 4.19 30.95 0.13 2.28 16 5 H 0.10 1.90 7.87 -2.39 -0.02 1.88 16 6 C -0.13 -3.44 7.74 31.30 0.24 -3.20 16 7 C 0.07 1.90 3.65 45.21 0.16 2.06 16 8 H 0.06 1.93 7.63 -2.39 -0.02 1.91 16 9 N -0.66 -20.17 5.42 -471.83 -2.56 -22.73 16 10 C 0.15 5.75 2.08 44.17 0.09 5.84 16 11 H 0.06 2.56 7.68 -2.38 -0.02 2.54 16 12 C -0.02 -0.96 3.46 29.85 0.10 -0.85 16 13 C -0.51 -28.31 9.10 25.60 0.23 -28.07 16 14 H 0.04 2.66 6.98 -2.91 -0.02 2.64 16 15 C 0.01 0.42 5.47 84.65 0.46 0.88 16 16 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 17 Si 0.94 44.12 27.40 68.60 1.88 46.00 16 18 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.25 -10.64 6.65 99.48 0.66 -9.98 16 21 C -0.08 -3.01 4.50 -19.85 -0.09 -3.10 16 22 C -0.07 -2.43 9.30 22.26 0.21 -2.22 16 23 C -0.21 -6.52 9.04 22.37 0.20 -6.32 16 24 C 0.10 3.52 6.69 22.51 0.15 3.67 16 25 O -0.34 -10.24 10.50 -92.50 -0.97 -11.21 16 26 C 0.02 0.39 9.81 113.37 1.11 1.50 16 27 C -0.17 -6.23 9.99 22.37 0.22 -6.01 16 28 C -0.08 -3.25 8.80 22.25 0.20 -3.06 16 29 C -0.10 -2.28 1.00 -52.31 -0.05 -2.33 16 30 C -0.13 -2.89 7.84 30.88 0.24 -2.64 16 31 C -0.13 -2.42 8.08 31.23 0.25 -2.17 16 32 C -0.10 -2.14 7.09 30.88 0.22 -1.92 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.34 9.94 6.30 -89.69 -0.56 9.37 16 41 H 0.02 0.73 7.10 -2.39 -0.02 0.71 16 42 H 0.02 0.76 7.35 -2.39 -0.02 0.75 16 43 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 44 H 0.13 3.97 7.32 -2.91 -0.02 3.95 16 45 H 0.15 3.62 6.30 -2.91 -0.02 3.60 16 46 H 0.06 1.08 7.66 -2.39 -0.02 1.07 16 47 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 48 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 50 H 0.11 4.61 7.83 -2.91 -0.02 4.59 16 51 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 52 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 53 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 54 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 55 H 0.07 1.61 7.65 -2.39 -0.02 1.60 16 56 H 0.08 1.82 6.80 -2.38 -0.02 1.81 16 Total: -1.00 -67.79 438.50 2.77 -65.02 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.24 Total: 37.62 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 5.30 Total: -45.64 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.26 Total: -82.01 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -2.39 Total: -21.00 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -67.79 2.77 -65.02 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095940795.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.003 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds