Wall clock time and date at job start Tue Mar 31 2020 06:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 H 1.09002 * 109.47351 * 54.99700 * 3 2 1 5 5 C 1.50700 * 109.47093 * 175.00411 * 3 2 1 6 6 H 1.07998 * 120.00243 * 120.00048 * 5 3 2 7 7 C 1.37874 * 119.99466 * 299.99456 * 5 3 2 8 8 N 1.31515 * 120.00539 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99819 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46972 * 90.00100 * 9 7 5 11 11 H 1.48499 * 109.47171 * 210.00064 * 9 7 5 12 12 H 1.48501 * 109.46638 * 330.00069 * 9 7 5 13 13 N 1.46508 * 109.46671 * 295.00145 * 3 2 1 14 14 C 1.34771 * 120.00039 * 85.00209 * 13 3 2 15 15 O 1.21589 * 120.00359 * 359.97438 * 14 13 3 16 16 N 1.34776 * 119.99656 * 179.97438 * 14 13 3 17 17 C 1.40150 * 119.99739 * 175.60537 * 16 14 13 18 18 C 1.38876 * 119.98836 * 35.17392 * 17 16 14 19 19 C 1.38146 * 120.10962 * 179.97438 * 18 17 16 20 20 C 1.38595 * 120.07607 * 359.72885 * 19 18 17 21 21 O 1.36004 * 120.01415 * 180.29753 * 20 19 18 22 22 C 1.42900 * 117.00038 * 0.25013 * 21 20 19 23 23 C 1.39259 * 119.97048 * 0.54734 * 20 19 18 24 24 N 1.40335 * 120.05348 * 179.71816 * 23 20 19 25 25 N 1.40608 * 127.38176 * 49.35900 * 24 23 20 26 26 N 1.28951 * 106.65342 * 180.28071 * 25 24 23 27 27 N 1.28425 * 110.19534 * 359.74913 * 26 25 24 28 28 C 1.30751 * 110.64191 * 359.97438 * 27 26 25 29 29 C 1.50697 * 126.36008 * 180.02562 * 28 27 26 30 30 C 1.38662 * 119.89078 * 359.45399 * 23 20 19 31 31 H 1.08999 * 109.46798 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46910 * 299.99930 * 1 2 3 33 33 H 1.08996 * 109.47370 * 60.00540 * 1 2 3 34 34 H 1.08996 * 109.47073 * 239.99688 * 2 1 3 35 35 H 1.08996 * 109.47370 * 119.99460 * 2 1 3 36 36 H 0.96998 * 119.99939 * 179.97438 * 8 7 5 37 37 H 0.97004 * 119.99282 * 265.00067 * 13 3 2 38 38 H 0.96996 * 120.00558 * 355.60231 * 16 14 13 39 39 H 1.08001 * 119.94457 * 359.96388 * 18 17 16 40 40 H 1.07997 * 119.95945 * 180.02562 * 19 18 17 41 41 H 1.08994 * 109.46812 * 60.00161 * 22 21 20 42 42 H 1.09001 * 109.46900 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47176 * 300.00212 * 22 21 20 44 44 H 1.09003 * 109.47327 * 85.06338 * 29 28 27 45 45 H 1.08997 * 109.47197 * 205.06451 * 29 28 27 46 46 H 1.09001 * 109.47313 * 325.06500 * 29 28 27 47 47 H 1.08001 * 120.03688 * 180.29783 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1432 0.8786 1.2279 8 7 3.4062 0.3368 2.1729 9 14 6.0049 0.8814 1.3817 10 1 6.4416 2.1144 2.0848 11 1 6.4396 -0.3096 2.1549 12 1 6.6134 0.8417 0.0277 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3417 2.6318 -0.4321 16 7 0.0786 3.2672 -2.5185 17 6 -1.2185 3.7754 -2.6711 18 6 -1.8772 4.3348 -1.5839 19 6 -3.1557 4.8369 -1.7316 20 6 -3.7824 4.7889 -2.9669 21 8 -5.0387 5.2892 -3.1123 22 6 -5.6504 5.8542 -1.9510 23 6 -3.1271 4.2236 -4.0579 24 7 -3.7623 4.1687 -5.3080 25 7 -4.4107 5.2181 -5.9829 26 7 -4.8548 4.7272 -7.0896 27 7 -4.5470 3.4835 -7.1780 28 6 -3.8792 3.0977 -6.1221 29 6 -3.3452 1.7133 -5.8594 30 6 -1.8439 3.7199 -3.9082 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8900 36 1 3.8294 -0.0616 2.9494 37 1 2.2718 2.1231 -1.9979 38 1 0.7199 3.3495 -3.2416 39 1 -1.3893 4.3771 -0.6214 40 1 -3.6655 5.2717 -0.8847 41 1 -5.0446 6.6848 -1.5890 42 1 -6.6474 6.2146 -2.2045 43 1 -5.7261 5.0938 -1.1737 44 1 -2.3716 1.6027 -6.3369 45 1 -3.2422 1.5615 -4.7849 46 1 -4.0355 0.9743 -6.2662 47 1 -1.3317 3.2853 -4.7539 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095942656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:06 Heat of formation + Delta-G solvation = 87.307598 kcal Electronic energy + Delta-G solvation = -32238.560852 eV Core-core repulsion = 27846.307619 eV Total energy + Delta-G solvation = -4392.253233 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.28027 -40.87434 -39.77200 -37.91963 -35.97358 -35.01801 -34.06877 -33.35032 -32.47595 -31.04432 -30.68301 -29.43334 -28.81348 -27.53305 -26.75816 -24.82665 -23.36158 -23.15567 -22.27876 -21.71999 -20.75237 -19.68276 -18.89905 -18.51417 -18.06682 -17.03172 -16.61847 -16.24794 -16.03791 -15.83487 -15.21930 -15.19562 -14.88023 -14.74569 -14.38042 -14.33452 -14.00616 -13.54838 -13.53129 -13.16389 -13.05744 -12.90348 -12.76452 -12.55162 -12.35585 -12.21808 -11.75784 -11.65751 -11.52556 -11.35706 -11.29168 -11.07494 -11.02475 -10.93723 -10.42349 -10.31248 -10.27421 -9.99776 -9.67809 -9.54623 -9.24655 -9.15883 -8.61385 -8.14773 -7.82086 -6.22921 -4.32764 0.36624 0.93596 1.17524 1.62157 2.12605 2.79024 2.98157 3.15936 3.17458 3.25150 3.26348 3.68466 3.72955 4.22096 4.23814 4.37567 4.50251 4.71570 4.76380 4.86085 4.92713 4.94439 4.98040 5.02887 5.09319 5.15583 5.17989 5.20328 5.28962 5.45130 5.48404 5.92043 6.00585 6.09355 6.25585 6.29944 6.36306 6.54487 6.66784 6.83945 6.97006 7.00421 7.19763 7.23161 7.30124 7.53499 7.72835 7.82912 8.07064 8.31801 8.57753 8.69438 9.04992 9.35264 10.82307 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.002213 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.672679 B =12650.731403 C =13350.865739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.715 5.715 14 C 0.694 3.306 15 O -0.576 6.576 16 N -0.695 5.695 17 C 0.167 3.833 18 C -0.056 4.056 19 C -0.175 4.175 20 C 0.133 3.867 21 O -0.306 6.306 22 C 0.026 3.974 23 C 0.097 3.903 24 N -0.314 5.314 25 N -0.064 5.064 26 N -0.048 5.048 27 N -0.336 5.336 28 C 0.249 3.751 29 C -0.082 4.082 30 C -0.109 4.109 31 H 0.021 0.979 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.265 0.735 37 H 0.387 0.613 38 H 0.405 0.595 39 H 0.160 0.840 40 H 0.145 0.855 41 H 0.060 0.940 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.010 5.814 -10.222 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.365 5.365 14 C 0.394 3.606 15 O -0.454 6.454 16 N -0.344 5.344 17 C 0.069 3.931 18 C -0.077 4.077 19 C -0.195 4.195 20 C 0.085 3.915 21 O -0.218 6.218 22 C -0.069 4.069 23 C 0.004 3.996 24 N -0.105 5.105 25 N -0.049 5.049 26 N -0.043 5.043 27 N -0.188 5.188 28 C -0.027 4.027 29 C -0.142 4.142 30 C -0.132 4.132 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.219 0.781 38 H 0.240 0.760 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.111 0.889 46 H 0.124 0.876 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.449 6.565 -10.101 18.056 hybrid contribution 2.086 -0.340 0.322 2.138 sum -11.363 6.225 -9.779 16.233 Atomic orbital electron populations 1.21813 0.98253 0.97993 1.01188 1.21962 0.92689 0.99790 1.02349 1.18760 0.94102 0.88926 0.79723 0.93128 1.21199 0.90566 1.39326 1.06403 0.92070 1.24868 0.98657 0.94695 0.95349 1.69884 1.35216 1.37369 1.09331 0.86450 0.84710 0.77720 0.78233 1.20543 1.21021 1.19856 1.45872 1.13095 1.58119 1.19458 1.16083 0.83801 0.78650 0.82046 1.90887 1.51796 1.64791 1.37894 1.42833 1.11415 1.61474 1.18629 1.17032 0.86071 0.97060 0.92892 1.21542 0.93798 0.92067 1.00304 1.21151 0.96860 1.05711 0.95785 1.18705 0.85301 0.95277 0.92255 1.86191 1.25811 1.73069 1.36743 1.23146 0.98474 0.97987 0.87313 1.16207 0.92743 1.10728 0.79914 1.48551 1.39278 1.07727 1.14966 1.82773 1.11332 1.08949 1.01851 1.78016 1.13634 1.02229 1.10380 1.74439 1.17523 1.05834 1.20994 1.25859 0.95864 0.93566 0.87383 1.20584 1.02786 0.86184 1.04598 1.20483 0.91381 1.02777 0.98602 0.95940 0.93140 0.94349 0.95024 0.88203 0.92450 0.78077 0.76014 0.82226 0.83773 0.92135 0.88030 0.92234 0.88065 0.88894 0.87638 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.51 37.16 0.32 -2.44 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.02 16 3 C 0.29 6.52 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -13.08 8.73 -34.44 -0.30 -13.38 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.30 11.29 55.43 0.63 -22.68 16 9 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 10 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 N -0.71 -12.73 5.03 -59.81 -0.30 -13.03 16 14 C 0.69 11.54 6.97 -86.92 -0.61 10.94 16 15 O -0.58 -11.35 10.92 5.29 0.06 -11.29 16 16 N -0.69 -8.31 5.35 -14.20 -0.08 -8.39 16 17 C 0.17 1.94 6.30 -83.63 -0.53 1.42 16 18 C -0.06 -0.69 8.69 -39.38 -0.34 -1.03 16 19 C -0.18 -1.85 9.03 -39.48 -0.36 -2.20 16 20 C 0.13 1.53 6.70 -39.07 -0.26 1.27 16 21 O -0.31 -3.52 9.82 -19.75 -0.19 -3.72 16 22 C 0.03 0.19 9.81 101.05 0.99 1.18 16 23 C 0.10 1.12 5.99 -83.43 -0.50 0.62 16 24 N -0.31 -3.97 3.53 -7.89 -0.03 -4.00 16 25 N -0.06 -0.96 13.43 60.35 0.81 -0.15 16 26 N -0.05 -0.73 13.39 60.35 0.81 0.08 16 27 N -0.34 -4.64 12.15 32.75 0.40 -4.24 16 28 C 0.25 2.83 8.00 -155.22 -1.24 1.59 16 29 C -0.08 -0.56 9.48 36.00 0.34 -0.21 16 30 C -0.11 -1.09 8.62 -39.24 -0.34 -1.43 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.11 7.84 -51.93 -0.41 0.70 16 33 H 0.04 0.75 5.64 -51.93 -0.29 0.46 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.39 5.84 8.56 -40.82 -0.35 5.49 16 38 H 0.40 3.56 8.84 -40.82 -0.36 3.20 16 39 H 0.16 2.26 6.22 -52.49 -0.33 1.94 16 40 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 41 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.61 7.34 -51.93 -0.38 0.23 16 46 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.14 1.08 7.72 -52.49 -0.41 0.67 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -31.73 389.64 -6.27 -38.00 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.01 Total: 7.78 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.22 Total: 1.27 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 2.24 Total: -52.41 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.14 Total: -15.00 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.73 -6.27 -38.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.309 kcal (2) G-P(sol) polarization free energy of solvation -31.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds