Wall clock time and date at job start Tue Mar 31 2020 06:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 H 1.09001 * 109.47487 * 305.00081 * 3 2 1 5 5 C 1.50701 * 109.47136 * 185.00140 * 3 2 1 6 6 H 1.07999 * 120.00071 * 239.99892 * 5 3 2 7 7 C 1.37878 * 120.00390 * 59.99791 * 5 3 2 8 8 N 1.31517 * 119.99677 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00463 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47188 * 119.99904 * 9 7 5 12 12 H 1.48505 * 109.47166 * 240.00305 * 9 7 5 13 13 N 1.46501 * 109.47412 * 64.99973 * 3 2 1 14 14 C 1.34772 * 119.99816 * 275.00265 * 13 3 2 15 15 O 1.21583 * 120.00501 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99561 * 179.97438 * 14 13 3 17 17 C 1.40148 * 119.99671 * 184.53322 * 16 14 13 18 18 C 1.38877 * 119.98511 * 144.39672 * 17 16 14 19 19 C 1.38151 * 120.10737 * 180.25515 * 18 17 16 20 20 C 1.38596 * 120.07597 * 359.48713 * 19 18 17 21 21 O 1.36005 * 120.01542 * 180.23707 * 20 19 18 22 22 C 1.42898 * 116.99506 * 359.97438 * 21 20 19 23 23 C 1.39261 * 119.97231 * 0.25604 * 20 19 18 24 24 N 1.40337 * 120.05266 * 179.97438 * 23 20 19 25 25 N 1.40600 * 127.38364 * 312.25840 * 24 23 20 26 26 N 1.28945 * 106.65495 * 179.83668 * 25 24 23 27 27 N 1.28422 * 110.19755 * 0.44550 * 26 25 24 28 28 C 1.30762 * 110.64045 * 359.71059 * 27 26 25 29 29 C 1.50694 * 126.36253 * 179.97438 * 28 27 26 30 30 C 1.38669 * 119.88932 * 359.97438 * 23 20 19 31 31 H 1.08997 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47007 * 299.99998 * 1 2 3 33 33 H 1.08994 * 109.47061 * 59.99924 * 1 2 3 34 34 H 1.08999 * 109.47007 * 240.00002 * 2 1 3 35 35 H 1.09001 * 109.46755 * 120.00336 * 2 1 3 36 36 H 0.97000 * 119.99964 * 180.02562 * 8 7 5 37 37 H 0.96998 * 119.99735 * 94.99961 * 13 3 2 38 38 H 0.97002 * 120.00425 * 4.53431 * 16 14 13 39 39 H 1.07995 * 119.94787 * 359.97438 * 18 17 16 40 40 H 1.08001 * 119.96127 * 179.77000 * 19 18 17 41 41 H 1.09000 * 109.47201 * 300.00022 * 22 21 20 42 42 H 1.08991 * 109.47476 * 60.00364 * 22 21 20 43 43 H 1.09004 * 109.46619 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47330 * 264.89465 * 29 28 27 45 45 H 1.09011 * 109.47068 * 24.89074 * 29 28 27 46 46 H 1.08998 * 109.47440 * 144.88872 * 29 28 27 47 47 H 1.08002 * 120.03464 * 180.02562 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8798 -1.3812 10 1 6.5988 1.5439 -0.1931 11 1 6.4961 -0.5193 -1.4627 12 1 6.4000 1.6155 -2.6092 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6326 0.4318 16 7 0.0786 3.2666 2.5187 17 6 -1.2195 3.7722 2.6723 18 6 -1.8479 3.7069 3.9090 19 6 -3.1294 4.1999 4.0620 20 6 -3.7874 4.7706 2.9839 21 8 -5.0471 5.2598 3.1371 22 6 -5.6314 5.1517 4.4367 23 6 -3.1582 4.8426 1.7437 24 7 -3.8231 5.4197 0.6508 25 7 -5.1370 5.1654 0.2196 26 7 -5.3379 5.9112 -0.8129 27 7 -4.2845 6.5968 -1.0765 28 6 -3.3360 6.3336 -0.2157 29 6 -1.9556 6.9377 -0.1950 30 6 -1.8737 4.3431 1.5904 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.8293 -0.0612 -2.9499 37 1 2.2720 2.1231 1.9977 38 1 0.7202 3.3500 3.2414 39 1 -1.3358 3.2660 4.7514 40 1 -3.6174 4.1445 5.0239 41 1 -5.6881 4.1016 4.7234 42 1 -5.0177 5.6923 5.1571 43 1 -6.6343 5.5783 4.4207 44 1 -1.2631 6.2798 -0.7201 45 1 -1.9770 7.9101 -0.6874 46 1 -1.6281 7.0605 0.8374 47 1 -1.3834 4.3981 0.6296 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095942657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:10 Heat of formation + Delta-G solvation = 87.504984 kcal Electronic energy + Delta-G solvation = -32649.273860 eV Core-core repulsion = 28257.029186 eV Total energy + Delta-G solvation = -4392.244674 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.10235 -40.85688 -39.76476 -37.87391 -35.87553 -35.12351 -33.92618 -33.17665 -32.48757 -31.01224 -30.62062 -29.33168 -28.69444 -27.57243 -26.77360 -24.70235 -23.48231 -23.04283 -22.15996 -21.50138 -20.74797 -19.66813 -18.91627 -18.41715 -18.10149 -16.96225 -16.58055 -16.10016 -15.98427 -15.94884 -15.27029 -15.08485 -14.96004 -14.51346 -14.37978 -14.15102 -13.87866 -13.50357 -13.34565 -13.23883 -13.02910 -12.81628 -12.73847 -12.49049 -12.33623 -12.13072 -11.73292 -11.61491 -11.51171 -11.34379 -11.24060 -11.03414 -10.93052 -10.89291 -10.39367 -10.29113 -10.08320 -9.95004 -9.68859 -9.56663 -9.16195 -9.12072 -8.60169 -8.13724 -7.81355 -6.20966 -4.31052 0.41918 1.00183 1.27475 1.79083 2.31794 2.79553 2.97562 3.17275 3.18301 3.26534 3.28116 3.71781 3.87952 4.23600 4.30141 4.44232 4.49352 4.74351 4.76647 4.81012 4.85552 5.03071 5.06996 5.11110 5.16200 5.18357 5.34909 5.39358 5.46850 5.51387 5.65242 5.77095 5.93915 6.07314 6.33168 6.38677 6.39468 6.57722 6.68243 6.85686 6.98682 7.02514 7.22595 7.25505 7.32667 7.55446 7.74797 7.84749 8.09090 8.49772 8.59449 8.71311 9.06721 9.36956 10.84311 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002603 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.414272 B =10755.666446 C =11755.479035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.577 6.577 16 N -0.694 5.694 17 C 0.164 3.836 18 C -0.094 4.094 19 C -0.177 4.177 20 C 0.130 3.870 21 O -0.304 6.304 22 C 0.026 3.974 23 C 0.103 3.897 24 N -0.315 5.315 25 N -0.064 5.064 26 N -0.047 5.047 27 N -0.336 5.336 28 C 0.254 3.746 29 C -0.082 4.082 30 C -0.072 4.072 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.265 0.735 37 H 0.387 0.613 38 H 0.406 0.594 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 10.254 16.887 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.365 5.365 14 C 0.392 3.608 15 O -0.454 6.454 16 N -0.344 5.344 17 C 0.067 3.933 18 C -0.115 4.115 19 C -0.197 4.197 20 C 0.081 3.919 21 O -0.216 6.216 22 C -0.068 4.068 23 C 0.010 3.990 24 N -0.107 5.107 25 N -0.049 5.049 26 N -0.042 5.042 27 N -0.187 5.187 28 C -0.022 4.022 29 C -0.142 4.142 30 C -0.095 4.095 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.219 0.781 38 H 0.241 0.759 39 H 0.157 0.843 40 H 0.161 0.839 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.109 0.891 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.447 10.010 15.021 21.374 hybrid contribution 2.316 -0.401 1.410 2.741 sum -9.131 9.608 16.432 21.112 Atomic orbital electron populations 1.21812 0.98256 0.98023 1.01188 1.21961 0.92654 0.99821 1.02321 1.18760 0.94130 0.88917 0.79726 0.93145 1.21225 0.90513 1.39314 1.06391 0.92011 1.24880 0.98670 0.94732 0.95350 1.69900 1.35127 1.37365 1.09318 0.86393 0.84712 0.77833 0.78146 1.19762 1.20855 1.20829 1.45859 1.13060 1.58117 1.19446 1.16136 0.83797 0.78736 0.82146 1.90909 1.51768 1.64788 1.37945 1.42832 1.11425 1.61501 1.18617 1.17025 0.86185 0.96901 0.93209 1.20908 0.94023 0.99535 0.97057 1.20897 0.96091 1.04393 0.98279 1.18688 0.85340 0.95847 0.92009 1.86232 1.25957 1.76216 1.33184 1.23121 0.98910 1.02074 0.82745 1.16503 0.93011 1.06954 0.82558 1.48509 1.11261 1.29361 1.21542 1.82745 0.93164 1.19387 1.09561 1.77986 1.17178 1.02300 1.06748 1.74434 0.97083 1.23586 1.23612 1.25836 0.99251 0.89820 0.87318 1.20596 0.86028 1.02533 1.05024 1.21155 0.92390 0.94425 1.01548 0.95929 0.94387 0.93175 0.88201 0.95040 0.92488 0.78085 0.75853 0.84321 0.83870 0.92257 0.92482 0.88056 0.87760 0.87609 0.89148 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.62 16 2 C -0.13 -2.97 5.45 -26.74 -0.15 -3.12 16 3 C 0.29 6.65 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.20 8.73 -34.44 -0.30 -13.50 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 9 Si 0.90 19.69 29.54 -169.99 -5.02 14.67 16 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -12.94 5.03 -59.82 -0.30 -13.24 16 14 C 0.69 11.85 6.97 -86.92 -0.61 11.24 16 15 O -0.58 -12.00 10.96 5.29 0.06 -11.94 16 16 N -0.69 -8.31 5.35 -14.20 -0.08 -8.39 16 17 C 0.16 1.92 6.29 -83.64 -0.53 1.40 16 18 C -0.09 -0.81 9.96 -39.38 -0.39 -1.21 16 19 C -0.18 -1.52 9.03 -39.48 -0.36 -1.87 16 20 C 0.13 1.51 6.69 -39.07 -0.26 1.25 16 21 O -0.30 -3.52 9.76 -19.76 -0.19 -3.71 16 22 C 0.03 0.17 9.81 101.05 0.99 1.16 16 23 C 0.10 1.40 6.13 -83.42 -0.51 0.89 16 24 N -0.32 -4.83 3.55 -7.88 -0.03 -4.86 16 25 N -0.06 -1.11 13.35 60.35 0.81 -0.31 16 26 N -0.05 -0.84 13.39 60.35 0.81 -0.03 16 27 N -0.34 -5.53 12.16 32.75 0.40 -5.13 16 28 C 0.25 3.60 7.99 -155.21 -1.24 2.36 16 29 C -0.08 -0.78 9.14 36.00 0.33 -0.45 16 30 C -0.07 -0.98 7.55 -39.24 -0.30 -1.27 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 33 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 34 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.39 5.87 8.56 -40.82 -0.35 5.52 16 38 H 0.41 3.38 8.84 -40.82 -0.36 3.02 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.79 6.29 -52.49 -0.33 0.46 16 41 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 42 H 0.06 0.26 7.66 -51.93 -0.40 -0.13 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 1.00 7.93 -51.93 -0.41 0.59 16 45 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 46 H 0.09 0.71 7.88 -51.93 -0.41 0.30 16 47 H 0.16 2.53 5.61 -52.49 -0.29 2.24 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -33.38 389.59 -6.31 -39.69 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.01 Total: 8.11 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -3.25 Total: 2.37 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 2.23 Total: -55.04 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.13 Total: -15.65 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.38 -6.31 -39.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.190 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds