Wall clock time and date at job start Tue Mar 31 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47315 * 2 1 4 4 H 1.09001 * 109.47487 * 305.00081 * 3 2 1 5 5 C 1.50701 * 109.47136 * 185.00140 * 3 2 1 6 6 H 1.07999 * 120.00071 * 239.99892 * 5 3 2 7 7 C 1.37878 * 120.00390 * 59.99791 * 5 3 2 8 8 N 1.31517 * 119.99677 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00463 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47054 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47188 * 119.99904 * 9 7 5 12 12 H 1.48505 * 109.47166 * 240.00305 * 9 7 5 13 13 N 1.46501 * 109.47412 * 64.99973 * 3 2 1 14 14 C 1.34772 * 119.99816 * 275.00265 * 13 3 2 15 15 O 1.21583 * 120.00501 * 359.97438 * 14 13 3 16 16 N 1.34780 * 119.99561 * 179.97438 * 14 13 3 17 17 C 1.40148 * 119.99671 * 184.53322 * 16 14 13 18 18 C 1.38877 * 119.98511 * 144.39672 * 17 16 14 19 19 C 1.38151 * 120.10737 * 180.25515 * 18 17 16 20 20 C 1.38596 * 120.07597 * 359.48713 * 19 18 17 21 21 O 1.36005 * 120.01542 * 180.23707 * 20 19 18 22 22 C 1.42898 * 116.99506 * 359.97438 * 21 20 19 23 23 C 1.39261 * 119.97231 * 0.25604 * 20 19 18 24 24 N 1.40337 * 120.05266 * 179.97438 * 23 20 19 25 25 N 1.40600 * 127.38364 * 312.25840 * 24 23 20 26 26 N 1.28945 * 106.65495 * 179.83668 * 25 24 23 27 27 N 1.28422 * 110.19755 * 0.44550 * 26 25 24 28 28 C 1.30762 * 110.64045 * 359.71059 * 27 26 25 29 29 C 1.50694 * 126.36253 * 179.97438 * 28 27 26 30 30 C 1.38669 * 119.88932 * 359.97438 * 23 20 19 31 31 H 1.08997 * 109.47561 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47007 * 299.99998 * 1 2 3 33 33 H 1.08994 * 109.47061 * 59.99924 * 1 2 3 34 34 H 1.08999 * 109.47007 * 240.00002 * 2 1 3 35 35 H 1.09001 * 109.46755 * 120.00336 * 2 1 3 36 36 H 0.97000 * 119.99964 * 180.02562 * 8 7 5 37 37 H 0.96998 * 119.99735 * 94.99961 * 13 3 2 38 38 H 0.97002 * 120.00425 * 4.53431 * 16 14 13 39 39 H 1.07995 * 119.94787 * 359.97438 * 18 17 16 40 40 H 1.08001 * 119.96127 * 179.77000 * 19 18 17 41 41 H 1.09000 * 109.47201 * 300.00022 * 22 21 20 42 42 H 1.08991 * 109.47476 * 60.00364 * 22 21 20 43 43 H 1.09004 * 109.46619 * 180.02562 * 22 21 20 44 44 H 1.09001 * 109.47330 * 264.89465 * 29 28 27 45 45 H 1.09011 * 109.47068 * 24.89074 * 29 28 27 46 46 H 1.08998 * 109.47440 * 144.88872 * 29 28 27 47 47 H 1.08002 * 120.03464 * 180.02562 * 30 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8798 -1.3812 10 1 6.5988 1.5439 -0.1931 11 1 6.4961 -0.5193 -1.4627 12 1 6.4000 1.6155 -2.6092 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6326 0.4318 16 7 0.0786 3.2666 2.5187 17 6 -1.2195 3.7722 2.6723 18 6 -1.8479 3.7069 3.9090 19 6 -3.1294 4.1999 4.0620 20 6 -3.7874 4.7706 2.9839 21 8 -5.0471 5.2598 3.1371 22 6 -5.6314 5.1517 4.4367 23 6 -3.1582 4.8426 1.7437 24 7 -3.8231 5.4197 0.6508 25 7 -5.1370 5.1654 0.2196 26 7 -5.3379 5.9112 -0.8129 27 7 -4.2845 6.5968 -1.0765 28 6 -3.3360 6.3336 -0.2157 29 6 -1.9556 6.9377 -0.1950 30 6 -1.8737 4.3431 1.5904 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.8293 -0.0612 -2.9499 37 1 2.2720 2.1231 1.9977 38 1 0.7202 3.3500 3.2414 39 1 -1.3358 3.2660 4.7514 40 1 -3.6174 4.1445 5.0239 41 1 -5.6881 4.1016 4.7234 42 1 -5.0177 5.6923 5.1571 43 1 -6.6343 5.5783 4.4207 44 1 -1.2631 6.2798 -0.7201 45 1 -1.9770 7.9101 -0.6874 46 1 -1.6281 7.0605 0.8374 47 1 -1.3834 4.3981 0.6296 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095942657.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:09 Heat of formation + Delta-G solvation = 63.499970 kcal Electronic energy + Delta-G solvation = -32650.314795 eV Core-core repulsion = 28257.029186 eV Total energy + Delta-G solvation = -4393.285610 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.170 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.27807 -41.86320 -40.88412 -38.86518 -37.22498 -36.49888 -35.08268 -34.33887 -34.17804 -32.68023 -31.56624 -30.34383 -29.63748 -28.82962 -27.95060 -25.76070 -25.09942 -24.20742 -23.35081 -22.56612 -22.04450 -21.33841 -19.95468 -19.75238 -18.96812 -18.15761 -17.89823 -17.43087 -17.04987 -16.76268 -16.69887 -16.44663 -16.07103 -15.88762 -15.50085 -15.13294 -14.92302 -14.85485 -14.57076 -14.19981 -14.13663 -13.95102 -13.88119 -13.70340 -13.50746 -13.22641 -13.17018 -13.12666 -12.83623 -12.71161 -12.47992 -12.31175 -12.26349 -12.15050 -12.04875 -11.99384 -11.58547 -11.26692 -11.10428 -10.99489 -10.81941 -10.52749 -10.07909 -9.67181 -8.82089 -8.14132 -6.30812 -0.56502 0.13574 0.23535 0.75313 1.10128 1.46101 1.47866 1.58542 1.74884 2.12692 2.19458 2.43352 2.57129 2.90656 3.16378 3.32338 3.54209 3.60110 3.74456 3.99813 4.10405 4.11988 4.23721 4.34928 4.40093 4.41522 4.49803 4.50192 4.57839 4.58032 4.63698 4.73974 4.76467 4.86365 5.03723 5.04542 5.10939 5.20334 5.27670 5.39184 5.45141 5.56230 5.63773 5.73014 5.78009 5.89057 6.19182 6.25799 6.29711 6.78576 7.27294 7.29464 7.38190 7.74846 8.91244 Molecular weight = 360.17amu Principal moments of inertia in cm(-1) A = 0.013449 B = 0.002603 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.414272 B =10755.666446 C =11755.479035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.298 3.702 4 H 0.000 1.000 5 C -0.542 4.542 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.257 1.257 11 H -0.282 1.282 12 H -0.288 1.288 13 N -0.711 5.711 14 C 0.692 3.308 15 O -0.617 6.617 16 N -0.670 5.670 17 C 0.145 3.855 18 C -0.064 4.064 19 C -0.163 4.163 20 C 0.130 3.870 21 O -0.332 6.332 22 C 0.015 3.985 23 C 0.069 3.931 24 N -0.313 5.313 25 N -0.090 5.090 26 N -0.069 5.069 27 N -0.358 5.358 28 C 0.253 3.747 29 C -0.078 4.078 30 C -0.083 4.083 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.404 0.596 38 H 0.427 0.573 39 H 0.182 0.818 40 H 0.185 0.815 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.127 0.873 46 H 0.110 0.890 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.250 10.499 21.303 25.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.018 0.982 5 C -0.580 4.580 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.181 1.181 11 H -0.208 1.208 12 H -0.214 1.214 13 N -0.364 5.364 14 C 0.393 3.607 15 O -0.497 6.497 16 N -0.321 5.321 17 C 0.048 3.952 18 C -0.085 4.085 19 C -0.182 4.182 20 C 0.082 3.918 21 O -0.245 6.245 22 C -0.079 4.079 23 C -0.023 4.023 24 N -0.104 5.104 25 N -0.075 5.075 26 N -0.063 5.063 27 N -0.210 5.210 28 C -0.023 4.023 29 C -0.138 4.138 30 C -0.106 4.106 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.239 0.761 38 H 0.267 0.733 39 H 0.200 0.800 40 H 0.202 0.798 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.145 0.855 46 H 0.128 0.872 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.309 10.286 19.542 24.372 hybrid contribution 1.872 -0.436 0.162 1.929 sum -8.437 9.850 19.704 23.589 Atomic orbital electron populations 1.21633 0.97273 0.98683 1.00088 1.21806 0.93382 0.99571 1.01289 1.18227 0.93383 0.88626 0.80357 0.98236 1.21596 0.91328 1.38570 1.06532 0.90625 1.25739 1.03026 0.94555 0.95173 1.70062 1.36935 1.38525 1.09928 0.85362 0.79475 0.77645 0.78226 1.18084 1.20845 1.21380 1.45382 1.14097 1.58436 1.18444 1.16198 0.82905 0.78604 0.83003 1.90911 1.52803 1.66060 1.39934 1.42376 1.12223 1.60151 1.17383 1.17211 0.86068 0.97827 0.94100 1.21320 0.93619 0.97043 0.96523 1.21356 0.95737 1.02273 0.98818 1.18935 0.85594 0.95368 0.91947 1.86214 1.25986 1.76172 1.36144 1.23470 0.99571 1.03615 0.81203 1.16784 0.93424 1.09121 0.83006 1.48618 1.10624 1.29162 1.22005 1.82628 0.94946 1.20006 1.09885 1.77928 1.18101 1.03014 1.07276 1.74350 0.97518 1.24375 1.24795 1.26577 1.00131 0.89157 0.86442 1.20813 0.83368 1.03040 1.06558 1.20920 0.92666 0.95840 1.01196 0.94225 0.93640 0.96046 0.91259 0.93826 0.92750 0.76060 0.73322 0.80034 0.79779 0.90736 0.89972 0.87304 0.88043 0.85454 0.87175 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.98 0.61 -4.64 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.52 16 3 C 0.30 14.11 2.24 44.24 0.10 14.21 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.03 16 5 C -0.54 -26.61 8.73 25.60 0.22 -26.39 16 6 H 0.08 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.78 5.29 84.65 0.45 1.22 16 8 N -0.92 -50.87 11.29 21.45 0.24 -50.62 16 9 Si 0.97 40.21 29.54 68.60 2.03 42.23 16 10 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 13 N -0.71 -25.23 5.03 -461.42 -2.32 -27.55 16 14 C 0.69 23.33 6.97 179.05 1.25 24.57 16 15 O -0.62 -26.49 10.96 -3.98 -0.04 -26.53 16 16 N -0.67 -14.42 5.35 -317.12 -1.70 -16.11 16 17 C 0.14 3.03 6.29 38.08 0.24 3.27 16 18 C -0.06 -0.80 9.96 22.40 0.22 -0.58 16 19 C -0.16 -2.04 9.03 22.33 0.20 -1.84 16 20 C 0.13 2.76 6.69 22.60 0.15 2.91 16 21 O -0.33 -7.17 9.76 -93.61 -0.91 -8.09 16 22 C 0.02 0.15 9.81 113.37 1.11 1.26 16 23 C 0.07 1.86 6.13 38.13 0.23 2.10 16 24 N -0.31 -9.94 3.55 -178.86 -0.64 -10.58 16 25 N -0.09 -3.27 13.35 37.02 0.49 -2.78 16 26 N -0.07 -2.57 13.39 37.02 0.50 -2.08 16 27 N -0.36 -12.39 12.16 -50.30 -0.61 -13.01 16 28 C 0.25 7.48 7.99 138.05 1.10 8.58 16 29 C -0.08 -1.52 9.14 71.23 0.65 -0.87 16 30 C -0.08 -2.24 7.55 22.49 0.17 -2.07 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.90 5.65 -2.39 -0.01 1.89 16 33 H 0.02 1.02 7.84 -2.39 -0.02 1.00 16 34 H 0.07 3.71 5.95 -2.39 -0.01 3.70 16 35 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.40 11.40 8.56 -92.71 -0.79 10.60 16 38 H 0.43 5.47 8.84 -92.71 -0.82 4.65 16 39 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 40 H 0.19 0.83 6.29 -2.91 -0.02 0.81 16 41 H 0.07 0.51 7.66 -2.39 -0.02 0.50 16 42 H 0.08 0.40 7.66 -2.39 -0.02 0.38 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 2.07 7.93 -2.39 -0.02 2.05 16 45 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.11 1.68 7.88 -2.39 -0.02 1.66 16 47 H 0.13 4.38 5.61 -2.91 -0.02 4.37 16 Total: -1.00 -78.75 389.59 3.36 -75.39 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.56 Total: 23.50 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.88 Total: 16.22 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -4.03 Total: -122.72 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.96 Total: -34.61 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.23 kcal Total: -78.75 3.36 -75.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942657.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.885 kcal (2) G-P(sol) polarization free energy of solvation -78.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds