Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47335 * 2 1 4 4 C 1.36211 * 126.50361 * 264.95656 * 3 2 1 5 5 C 1.35555 * 107.10430 * 180.02562 * 4 3 2 6 6 N 1.33144 * 108.44550 * 0.02562 * 5 4 3 7 7 C 1.31909 * 109.22012 * 359.97438 * 6 5 4 8 8 C 1.46475 * 125.87806 * 180.02562 * 7 6 5 9 9 C 1.35287 * 120.00253 * 0.02562 * 8 7 6 10 10 C 1.46111 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21647 * 120.00190 * 0.02562 * 10 9 8 12 12 O 1.34933 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.42901 * 117.00086 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47089 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00217 * 359.97438 * 14 13 12 16 16 N 1.34785 * 119.99789 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99592 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47169 * 89.99961 * 17 16 14 19 19 H 1.07993 * 119.99712 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00011 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99943 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47495 * 89.99796 * 22 20 18 24 24 H 1.48505 * 109.46984 * 209.99547 * 22 20 18 25 25 H 1.48497 * 109.47238 * 329.99210 * 22 20 18 26 26 C 1.46498 * 120.00027 * 359.97438 * 16 14 13 27 27 C 1.53001 * 109.47159 * 90.00157 * 26 16 14 28 28 C 1.47201 * 109.46666 * 180.02562 * 27 26 16 29 29 N 9.06097 * 120.12747 * 246.73638 * 8 1 2 30 30 H 1.09004 * 109.47497 * 300.00324 * 1 2 3 31 31 H 1.09001 * 109.47247 * 59.99781 * 1 2 3 32 32 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47497 * 239.99676 * 2 1 3 34 34 H 1.09009 * 109.47059 * 119.99929 * 2 1 3 35 35 H 1.08001 * 126.45164 * 0.06690 * 4 3 2 36 36 H 1.08001 * 125.77712 * 180.25954 * 5 4 3 37 37 H 1.07999 * 119.99681 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.99549 * 0.02562 * 9 8 7 39 39 H 1.09002 * 109.47004 * 299.99972 * 13 12 10 40 40 H 1.09003 * 109.47274 * 59.99980 * 13 12 10 41 41 H 1.09003 * 109.46914 * 209.99788 * 17 16 14 42 42 H 1.09003 * 109.47710 * 329.99455 * 17 16 14 43 43 H 0.97005 * 119.99813 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.46791 * 209.99947 * 26 16 14 45 45 H 1.09001 * 109.47067 * 330.00017 * 26 16 14 46 46 H 1.09000 * 109.47097 * 299.99602 * 27 26 16 47 47 H 1.09001 * 109.47245 * 59.99968 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3792 2.1130 -1.0907 5 6 2.7686 3.3315 -0.6421 6 7 2.6518 3.3493 0.6841 7 6 2.1994 2.1806 1.0959 8 6 1.9361 1.8036 2.4866 9 6 2.1575 2.6927 3.4820 10 6 1.8943 2.3167 4.8692 11 8 1.4765 1.2042 5.1291 12 8 2.1156 3.2033 5.8620 13 6 1.8371 2.7681 7.1944 14 6 2.1413 3.8835 8.1610 15 8 2.5562 4.9463 7.7496 16 7 1.9532 3.6996 9.4830 17 6 2.2494 4.7838 10.4227 18 6 1.0167 5.6277 10.6207 19 1 0.1041 5.3814 10.0985 20 6 1.0541 6.7143 11.4686 21 7 -0.0216 7.4511 11.6411 22 14 2.6329 7.1407 12.3713 23 1 3.4401 8.0729 11.5437 24 1 2.3031 7.7878 13.6667 25 1 3.4105 5.9006 12.6214 26 6 1.4526 2.4157 9.9800 27 6 2.6330 1.4893 10.2791 28 6 2.1298 0.1990 10.7779 29 7 1.7425 -0.7963 11.1644 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.3583 1.7846 -2.1193 36 1 3.1117 4.1505 -1.2568 37 1 1.5652 0.8159 2.7173 38 1 2.5280 3.6805 3.2511 39 1 0.7850 2.4948 7.2749 40 1 2.4564 1.9028 7.4309 41 1 2.5581 4.3614 11.3790 42 1 3.0528 5.4023 10.0224 43 1 0.0046 8.2153 12.2379 44 1 0.8781 2.5782 10.8919 45 1 0.8137 1.9579 9.2248 46 1 3.2075 1.3268 9.3672 47 1 3.2719 1.9471 11.0343 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095942937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = -3.550626 kcal Electronic energy + Delta-G solvation = -30442.161999 eV Core-core repulsion = 26013.676106 eV Total energy + Delta-G solvation = -4428.485893 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.163 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.45044 -40.69145 -39.25782 -37.03284 -36.61668 -35.55216 -35.36007 -34.16825 -32.85185 -31.08888 -30.71320 -29.93281 -29.06964 -27.28140 -25.04852 -24.20596 -24.06303 -22.45693 -21.92248 -20.92613 -19.38687 -18.79390 -18.30497 -17.84586 -17.44291 -16.91155 -16.72631 -16.64128 -16.23201 -15.87653 -15.59807 -15.17842 -14.80687 -14.65483 -14.59184 -14.20243 -14.03225 -13.91016 -13.74576 -13.51265 -13.26141 -12.96738 -12.74637 -12.70045 -12.57658 -12.53721 -12.36289 -12.19340 -11.97752 -11.87224 -11.62692 -11.13284 -11.03212 -10.81301 -10.74599 -10.64295 -10.58225 -10.41961 -10.23820 -10.14729 -9.61842 -9.22670 -8.63423 -8.46005 -8.01383 -6.12764 -4.13068 0.25846 1.78772 2.06886 2.45964 2.59879 2.66775 2.75531 3.04310 3.08776 3.26537 3.31571 3.34909 3.52219 3.92839 4.00143 4.08278 4.26819 4.32547 4.35364 4.54873 4.66517 4.73430 4.82374 4.88964 4.93464 4.96033 4.98716 5.05064 5.08848 5.16490 5.19635 5.20751 5.37811 5.44645 5.56997 5.67996 5.83510 5.93200 5.96449 6.21371 6.31533 6.53037 6.60525 6.81402 7.08890 7.50942 7.52655 7.58353 7.61827 7.93315 8.38754 8.68909 8.90702 9.45919 11.00325 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.001947 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.124609 B =14379.872060 C =16177.364902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 N -0.443 5.443 4 C -0.038 4.038 5 C -0.023 4.023 6 N -0.455 5.455 7 C 0.204 3.796 8 C 0.003 3.997 9 C -0.137 4.137 10 C 0.499 3.501 11 O -0.514 6.514 12 O -0.315 6.315 13 C 0.046 3.954 14 C 0.512 3.488 15 O -0.506 6.506 16 N -0.588 5.588 17 C 0.216 3.784 18 C -0.534 4.534 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.894 5.894 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.265 1.265 26 C 0.112 3.888 27 C -0.052 4.052 28 C 0.215 3.785 29 N -0.440 5.440 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.036 0.964 42 H 0.042 0.958 43 H 0.265 0.735 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.107 0.893 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -17.076 -23.691 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.027 4.027 3 N -0.125 5.125 4 C -0.174 4.174 5 C -0.175 4.175 6 N -0.173 5.173 7 C -0.050 4.050 8 C -0.017 4.017 9 C -0.160 4.160 10 C 0.345 3.655 11 O -0.405 6.405 12 O -0.230 6.230 13 C -0.032 4.032 14 C 0.297 3.703 15 O -0.380 6.380 16 N -0.321 5.321 17 C 0.097 3.903 18 C -0.573 4.573 19 H 0.094 0.906 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.014 4.014 27 C -0.093 4.093 28 C -0.103 4.103 29 N -0.117 5.117 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.196 0.804 36 H 0.193 0.807 37 H 0.162 0.838 38 H 0.175 0.825 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.120 0.880 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.717 -17.621 -22.615 29.055 hybrid contribution 0.522 -0.108 -0.163 0.558 sum 5.239 -17.729 -22.779 29.336 Atomic orbital electron populations 1.22192 0.93470 1.03680 1.03650 1.21999 0.96160 0.79352 1.05147 1.45666 1.47340 1.12682 1.06789 1.22975 1.07477 0.94093 0.92839 1.22443 1.06583 0.97380 0.91135 1.70408 1.16013 1.18595 1.12308 1.21308 1.07253 0.87762 0.88710 1.21039 0.94868 0.99307 0.86486 1.22187 1.03420 1.02626 0.87791 1.21181 0.74677 0.82527 0.87090 1.90879 1.42612 1.21898 1.85083 1.86270 1.78082 1.43164 1.15436 1.22589 1.03331 0.97495 0.79790 1.19752 0.79575 0.88236 0.82786 1.90753 1.43789 1.26532 1.76879 1.47800 1.64854 1.13807 1.05633 1.19787 0.98109 0.85292 0.87161 1.21289 0.97233 1.11465 1.27266 0.90561 1.24857 0.96219 0.95577 0.96288 1.69890 1.28265 1.17691 1.37337 0.86869 0.83976 0.79417 0.79504 1.19816 1.21109 1.18953 1.21426 0.93883 0.83391 1.02679 1.19890 1.00278 0.85714 1.03418 1.28988 0.93558 0.94480 0.93253 1.81213 1.08754 1.12276 1.09492 0.91366 0.91647 0.90064 0.88449 0.88510 0.80357 0.80711 0.83784 0.82465 0.88413 0.88764 0.94597 0.94017 0.92461 0.87972 0.90243 0.87530 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.24 37.15 0.38 -0.23 16 2 C 0.10 0.35 6.60 -4.05 -0.03 0.32 16 3 N -0.44 -3.11 2.78 -114.56 -0.32 -3.43 16 4 C -0.04 -0.24 11.57 -16.57 -0.19 -0.44 16 5 C -0.02 -0.20 11.84 -17.94 -0.21 -0.41 16 6 N -0.46 -5.26 10.76 -11.42 -0.12 -5.38 16 7 C 0.20 2.02 7.66 -154.51 -1.18 0.84 16 8 C 0.00 0.03 9.30 -37.32 -0.35 -0.32 16 9 C -0.14 -1.56 9.77 -37.48 -0.37 -1.92 16 10 C 0.50 6.64 7.87 33.89 0.27 6.91 16 11 O -0.51 -7.23 16.01 -19.38 -0.31 -7.54 16 12 O -0.32 -4.86 9.66 -47.89 -0.46 -5.33 16 13 C 0.05 0.65 4.41 36.01 0.16 0.81 16 14 C 0.51 9.39 7.75 -10.98 -0.09 9.30 16 15 O -0.51 -11.75 16.08 -14.35 -0.23 -11.98 16 16 N -0.59 -10.27 2.46 -175.06 -0.43 -10.70 16 17 C 0.22 4.68 4.23 -5.19 -0.02 4.66 16 18 C -0.53 -14.33 9.94 -34.44 -0.34 -14.67 16 19 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.89 -26.70 13.96 55.43 0.77 -25.92 16 22 Si 0.88 20.45 27.47 -169.99 -4.67 15.78 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 26 C 0.11 1.41 5.17 -4.04 -0.02 1.39 16 27 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 28 C 0.22 2.50 15.43 -20.77 -0.32 2.18 16 29 N -0.44 -6.35 18.54 42.15 0.78 -5.57 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 0.29 7.66 -51.92 -0.40 -0.11 16 35 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.18 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.12 7.09 -52.49 -0.37 0.75 16 38 H 0.16 1.85 7.72 -52.49 -0.41 1.44 16 39 H 0.10 1.25 7.39 -51.93 -0.38 0.87 16 40 H 0.09 1.04 7.17 -51.93 -0.37 0.67 16 41 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 42 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.10 1.36 8.07 -51.93 -0.42 0.94 16 45 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 46 H 0.11 0.81 7.22 -51.93 -0.37 0.44 16 47 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 417.64 15.07 6.29 6.29 Total: -1.00 -38.08 417.64 -7.62 -45.70 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.33 Total: -1.63 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -2.59 Total: 9.70 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.68 Total: -51.00 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -1.00 Total: -24.84 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -38.08 -7.62 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.145 kcal (2) G-P(sol) polarization free energy of solvation -38.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds