Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47335 * 2 1 4 4 C 1.36211 * 126.50361 * 264.95656 * 3 2 1 5 5 C 1.35555 * 107.10430 * 180.02562 * 4 3 2 6 6 N 1.33144 * 108.44550 * 0.02562 * 5 4 3 7 7 C 1.31909 * 109.22012 * 359.97438 * 6 5 4 8 8 C 1.46475 * 125.87806 * 180.02562 * 7 6 5 9 9 C 1.35287 * 120.00253 * 0.02562 * 8 7 6 10 10 C 1.46111 * 119.99880 * 179.97438 * 9 8 7 11 11 O 1.21647 * 120.00190 * 0.02562 * 10 9 8 12 12 O 1.34933 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.42901 * 117.00086 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47089 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00217 * 359.97438 * 14 13 12 16 16 N 1.34785 * 119.99789 * 180.02562 * 14 13 12 17 17 C 1.46497 * 119.99592 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47169 * 89.99961 * 17 16 14 19 19 H 1.07993 * 119.99712 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00011 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99943 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99911 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47495 * 89.99796 * 22 20 18 24 24 H 1.48505 * 109.46984 * 209.99547 * 22 20 18 25 25 H 1.48497 * 109.47238 * 329.99210 * 22 20 18 26 26 C 1.46498 * 120.00027 * 359.97438 * 16 14 13 27 27 C 1.53001 * 109.47159 * 90.00157 * 26 16 14 28 28 C 1.47201 * 109.46666 * 180.02562 * 27 26 16 29 29 N 9.06097 * 120.12747 * 246.73638 * 8 1 2 30 30 H 1.09004 * 109.47497 * 300.00324 * 1 2 3 31 31 H 1.09001 * 109.47247 * 59.99781 * 1 2 3 32 32 H 1.09005 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47497 * 239.99676 * 2 1 3 34 34 H 1.09009 * 109.47059 * 119.99929 * 2 1 3 35 35 H 1.08001 * 126.45164 * 0.06690 * 4 3 2 36 36 H 1.08001 * 125.77712 * 180.25954 * 5 4 3 37 37 H 1.07999 * 119.99681 * 180.02562 * 8 7 6 38 38 H 1.08001 * 119.99549 * 0.02562 * 9 8 7 39 39 H 1.09002 * 109.47004 * 299.99972 * 13 12 10 40 40 H 1.09003 * 109.47274 * 59.99980 * 13 12 10 41 41 H 1.09003 * 109.46914 * 209.99788 * 17 16 14 42 42 H 1.09003 * 109.47710 * 329.99455 * 17 16 14 43 43 H 0.97005 * 119.99813 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.46791 * 209.99947 * 26 16 14 45 45 H 1.09001 * 109.47067 * 330.00017 * 26 16 14 46 46 H 1.09000 * 109.47097 * 299.99602 * 27 26 16 47 47 H 1.09001 * 109.47245 * 59.99968 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3792 2.1130 -1.0907 5 6 2.7686 3.3315 -0.6421 6 7 2.6518 3.3493 0.6841 7 6 2.1994 2.1806 1.0959 8 6 1.9361 1.8036 2.4866 9 6 2.1575 2.6927 3.4820 10 6 1.8943 2.3167 4.8692 11 8 1.4765 1.2042 5.1291 12 8 2.1156 3.2033 5.8620 13 6 1.8371 2.7681 7.1944 14 6 2.1413 3.8835 8.1610 15 8 2.5562 4.9463 7.7496 16 7 1.9532 3.6996 9.4830 17 6 2.2494 4.7838 10.4227 18 6 1.0167 5.6277 10.6207 19 1 0.1041 5.3814 10.0985 20 6 1.0541 6.7143 11.4686 21 7 -0.0216 7.4511 11.6411 22 14 2.6329 7.1407 12.3713 23 1 3.4401 8.0729 11.5437 24 1 2.3031 7.7878 13.6667 25 1 3.4105 5.9006 12.6214 26 6 1.4526 2.4157 9.9800 27 6 2.6330 1.4893 10.2791 28 6 2.1298 0.1990 10.7779 29 7 1.7425 -0.7963 11.1644 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.3583 1.7846 -2.1193 36 1 3.1117 4.1505 -1.2568 37 1 1.5652 0.8159 2.7173 38 1 2.5280 3.6805 3.2511 39 1 0.7850 2.4948 7.2749 40 1 2.4564 1.9028 7.4309 41 1 2.5581 4.3614 11.3790 42 1 3.0528 5.4023 10.0224 43 1 0.0046 8.2153 12.2379 44 1 0.8781 2.5782 10.8919 45 1 0.8137 1.9579 9.2248 46 1 3.2075 1.3268 9.3672 47 1 3.2719 1.9471 11.0343 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095942937.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = -26.970593 kcal Electronic energy + Delta-G solvation = -30443.177565 eV Core-core repulsion = 26013.676106 eV Total energy + Delta-G solvation = -4429.501459 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 360.163 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.04594 -41.80967 -40.61332 -38.11026 -37.71798 -36.73826 -36.00072 -34.96641 -34.80958 -32.41160 -31.22441 -31.06874 -29.99944 -28.74111 -25.88550 -25.28619 -24.66338 -24.04568 -22.64971 -21.70902 -20.39007 -19.92267 -19.21781 -19.19489 -18.53595 -18.13522 -17.92005 -17.73191 -17.40419 -16.79587 -16.43514 -16.20232 -15.80971 -15.75473 -15.60684 -15.25606 -14.97488 -14.73817 -14.56396 -14.44228 -14.39808 -14.04107 -13.91012 -13.75134 -13.64476 -13.58685 -13.32860 -13.16532 -13.02448 -12.95952 -12.69503 -12.38878 -12.26153 -12.07174 -11.94980 -11.84123 -11.70518 -11.67294 -11.47173 -11.06932 -10.76562 -10.74910 -10.73993 -9.55693 -9.10416 -8.26307 -6.31536 -0.54583 1.11605 1.21451 1.41258 1.45833 1.52561 1.56946 1.70263 1.77587 1.83250 1.85538 2.33005 2.35337 2.38564 3.03815 3.11435 3.28254 3.54456 3.64827 3.74950 3.86997 4.00197 4.01453 4.05211 4.05915 4.09769 4.14773 4.35649 4.46159 4.49709 4.55289 4.76197 4.79400 4.79676 4.82076 4.86612 4.98042 5.08285 5.12749 5.19418 5.20073 5.29957 5.51532 5.56903 5.73359 6.07254 6.28105 6.47472 6.60834 6.63848 6.71945 6.98040 7.21188 7.35334 8.90479 Molecular weight = 360.16amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.001947 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.124609 B =14379.872060 C =16177.364902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 N -0.436 5.436 4 C -0.011 4.011 5 C -0.055 4.055 6 N -0.494 5.494 7 C 0.169 3.831 8 C 0.037 3.963 9 C -0.169 4.169 10 C 0.507 3.493 11 O -0.524 6.524 12 O -0.340 6.340 13 C 0.052 3.948 14 C 0.507 3.493 15 O -0.566 6.566 16 N -0.586 5.586 17 C 0.222 3.778 18 C -0.536 4.536 19 H 0.030 0.970 20 C 0.007 3.993 21 N -0.949 5.949 22 Si 0.945 3.055 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.223 1.223 26 C 0.106 3.894 27 C -0.039 4.039 28 C 0.245 3.755 29 N -0.490 5.490 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.222 0.778 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.069 0.931 42 H 0.028 0.972 43 H 0.266 0.734 44 H 0.094 0.906 45 H 0.100 0.900 46 H 0.137 0.863 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -20.200 -25.150 32.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.032 4.032 3 N -0.117 5.117 4 C -0.149 4.149 5 C -0.207 4.207 6 N -0.214 5.214 7 C -0.085 4.085 8 C 0.017 3.983 9 C -0.191 4.191 10 C 0.354 3.646 11 O -0.416 6.416 12 O -0.255 6.255 13 C -0.025 4.025 14 C 0.295 3.705 15 O -0.444 6.444 16 N -0.318 5.318 17 C 0.101 3.899 18 C -0.574 4.574 19 H 0.048 0.952 20 C -0.191 4.191 21 N -0.589 5.589 22 Si 0.768 3.232 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.145 1.145 26 C -0.019 4.019 27 C -0.080 4.080 28 C -0.073 4.073 29 N -0.168 5.168 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.123 0.877 35 H 0.238 0.762 36 H 0.207 0.793 37 H 0.181 0.819 38 H 0.162 0.838 39 H 0.130 0.870 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.154 0.846 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.445 -20.842 -24.055 32.474 hybrid contribution -0.135 0.833 0.027 0.844 sum 6.310 -20.009 -24.027 31.898 Atomic orbital electron populations 1.22176 0.93406 1.04575 1.02536 1.22350 0.96141 0.77631 1.07102 1.45937 1.46046 1.13631 1.06052 1.23646 1.04107 0.92900 0.94199 1.22910 1.07969 0.99267 0.90505 1.70325 1.16773 1.20074 1.14183 1.21276 1.09398 0.88379 0.89442 1.21219 0.91617 0.99244 0.86180 1.21953 1.06889 1.02927 0.87377 1.21305 0.74140 0.82068 0.87048 1.90856 1.43544 1.22018 1.85164 1.86261 1.78634 1.44461 1.16188 1.22604 1.04935 0.96389 0.78619 1.20491 0.78173 0.88486 0.83384 1.90722 1.46599 1.29161 1.77938 1.47729 1.64427 1.14529 1.05117 1.19514 0.95015 0.86066 0.89342 1.21609 0.97617 1.12246 1.25952 0.95207 1.25882 1.00054 0.95506 0.97611 1.70066 1.31160 1.18741 1.38944 0.85762 0.79348 0.80562 0.77565 1.20516 1.21009 1.14530 1.21658 0.95435 0.81819 1.02946 1.19875 0.98995 0.83806 1.05319 1.29145 0.92182 0.94138 0.91810 1.81259 1.10175 1.14026 1.11332 0.93365 0.91860 0.88169 0.85425 0.87738 0.76181 0.79313 0.81932 0.83819 0.86956 0.84835 0.91277 0.95354 0.92527 0.88790 0.88161 0.84569 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 71.98 0.74 -0.04 16 2 C 0.09 0.36 6.60 86.38 0.57 0.93 16 3 N -0.44 -5.13 2.78 -516.37 -1.44 -6.57 16 4 C -0.01 -0.11 11.57 83.39 0.96 0.85 16 5 C -0.05 -0.89 11.84 83.87 0.99 0.10 16 6 N -0.49 -11.55 10.76 -190.04 -2.04 -13.60 16 7 C 0.17 3.24 7.66 135.86 1.04 4.28 16 8 C 0.04 0.70 9.30 23.74 0.22 0.92 16 9 C -0.17 -3.95 9.77 23.63 0.23 -3.72 16 10 C 0.51 13.43 7.87 69.86 0.55 13.98 16 11 O -0.52 -14.05 16.01 19.36 0.31 -13.74 16 12 O -0.34 -10.57 9.66 -52.02 -0.50 -11.07 16 13 C 0.05 1.39 4.41 71.24 0.31 1.70 16 14 C 0.51 18.50 7.75 87.66 0.68 19.18 16 15 O -0.57 -27.11 16.08 16.00 0.26 -26.85 16 16 N -0.59 -19.83 2.46 -826.14 -2.03 -21.86 16 17 C 0.22 9.41 4.23 85.63 0.36 9.77 16 18 C -0.54 -29.47 9.94 25.60 0.25 -29.21 16 19 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 20 C 0.01 0.40 5.47 84.66 0.46 0.86 16 21 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 22 Si 0.94 42.00 27.47 68.60 1.88 43.89 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 25 H -0.22 -8.33 6.54 99.48 0.65 -7.68 16 26 C 0.11 2.41 5.17 86.38 0.45 2.86 16 27 C -0.04 -0.60 6.03 28.79 0.17 -0.42 16 28 C 0.24 4.97 15.43 89.44 1.38 6.35 16 29 N -0.49 -13.23 18.54 20.00 0.37 -12.86 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 34 H 0.10 0.30 7.66 -2.38 -0.02 0.28 16 35 H 0.22 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.16 2.30 7.09 -2.91 -0.02 2.28 16 38 H 0.14 3.71 7.72 -2.91 -0.02 3.69 16 39 H 0.11 2.70 7.39 -2.39 -0.02 2.68 16 40 H 0.13 2.50 7.17 -2.39 -0.02 2.48 16 41 H 0.07 2.50 7.13 -2.39 -0.02 2.49 16 42 H 0.03 1.30 6.85 -2.39 -0.02 1.28 16 43 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 44 H 0.09 2.34 8.07 -2.39 -0.02 2.33 16 45 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 46 H 0.14 1.40 7.22 -2.39 -0.02 1.38 16 47 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -89.83 417.64 7.43 -82.40 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: 0.95 Total: 10.48 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 9.38 Total: 28.38 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.84 Total: -113.48 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: 0.06 Total: -51.67 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.89 kcal Total: -89.83 7.43 -82.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942937.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.430 kcal (2) G-P(sol) polarization free energy of solvation -89.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds