Wall clock time and date at job start Tue Mar 31 2020 07:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21357 * 120.00008 * 2 1 4 4 C 1.46253 * 120.00371 * 179.97438 * 2 1 3 5 5 C 1.37037 * 125.18125 * 180.02562 * 4 2 1 6 6 C 1.36634 * 114.68650 * 180.02562 * 5 4 2 7 7 C 1.36734 * 114.78624 * 0.02562 * 6 5 4 8 8 C 1.47236 * 125.14105 * 179.97438 * 7 6 5 9 9 O 1.21633 * 120.00120 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99662 * 179.97438 * 8 7 6 11 11 C 1.40012 * 119.99789 * 185.52522 * 10 8 7 12 12 C 1.38692 * 120.10581 * 24.83157 * 11 10 8 13 13 C 1.38234 * 120.00840 * 180.02562 * 12 11 10 14 14 C 1.38312 * 120.21353 * 359.97438 * 13 12 11 15 15 C 1.38197 * 120.20565 * 0.02562 * 14 13 12 16 16 C 1.38781 * 119.99450 * 0.02562 * 15 14 13 17 17 S 1.76193 * 120.10811 * 179.97438 * 16 15 14 18 18 C 1.81404 * 102.99967 * 359.97438 * 17 16 15 19 19 C 1.50703 * 109.47176 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99967 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99776 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00452 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99795 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46970 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46968 * 120.00148 * 23 21 19 26 26 H 1.48504 * 109.47126 * 240.00165 * 23 21 19 27 27 S 1.75837 * 109.71759 * 0.24111 * 7 6 5 28 28 H 1.08994 * 109.47367 * 270.00076 * 1 2 3 29 29 H 1.08996 * 109.46837 * 30.00476 * 1 2 3 30 30 H 1.09004 * 109.46444 * 150.00074 * 1 2 3 31 31 H 1.08002 * 122.66026 * 359.97438 * 5 4 2 32 32 H 1.08006 * 122.60369 * 180.02562 * 6 5 4 33 33 H 0.96993 * 119.99990 * 5.52776 * 10 8 7 34 34 H 1.08005 * 119.99169 * 0.03915 * 12 11 10 35 35 H 1.08003 * 119.89398 * 179.97438 * 13 12 11 36 36 H 1.07996 * 119.89383 * 180.28342 * 14 13 12 37 37 H 1.08001 * 120.00083 * 180.02562 * 15 14 13 38 38 H 1.08994 * 109.47334 * 299.99987 * 18 17 16 39 39 H 1.08998 * 109.47138 * 60.00267 * 18 17 16 40 40 H 0.96997 * 120.00105 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0510 0.0000 4 6 2.2384 -1.2665 0.0006 5 6 3.6031 -1.3902 0.0011 6 6 4.0594 -2.6781 0.0010 7 6 3.0808 -3.6330 -0.0002 8 6 3.3150 -5.0866 -0.0010 9 8 4.4517 -5.5195 -0.0012 10 7 2.2698 -5.9376 -0.0017 11 6 2.4889 -7.3156 0.1143 12 6 3.6406 -7.7878 0.7260 13 6 3.8551 -9.1487 0.8389 14 6 2.9240 -10.0436 0.3438 15 6 1.7734 -9.5827 -0.2675 16 6 1.5498 -8.2182 -0.3864 17 16 0.0842 -7.6274 -1.1657 18 6 -0.7782 -9.1558 -1.6252 19 6 -2.0738 -8.8137 -2.3149 20 1 -2.3504 -7.7802 -2.4625 21 6 -2.9058 -9.8201 -2.7575 22 7 -2.5691 -11.0786 -2.5773 23 14 -4.5120 -9.3960 -3.6118 24 1 -4.6573 -7.9201 -3.6883 25 1 -4.5085 -9.9654 -4.9833 26 1 -5.6473 -9.9655 -2.8423 27 16 1.5002 -2.8625 -0.0082 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5139 31 1 4.2657 -0.5373 0.0008 32 1 5.1114 -2.9228 0.0018 33 1 1.3658 -5.5953 -0.0824 34 1 4.3697 -7.0921 1.1145 35 1 4.7528 -9.5144 1.3153 36 1 3.0947 -11.1057 0.4388 37 1 1.0483 -10.2844 -0.6525 38 1 -0.1508 -9.7383 -2.2997 39 1 -0.9867 -9.7390 -0.7283 40 1 -3.1546 -11.7866 -2.8884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953497.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:59 Heat of formation + Delta-G solvation = -14.442508 kcal Electronic energy + Delta-G solvation = -25349.741132 eV Core-core repulsion = 21540.444167 eV Total energy + Delta-G solvation = -3809.296966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.059 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64677 -39.85373 -38.43008 -37.25523 -34.90354 -33.33608 -31.76841 -30.86424 -30.30073 -28.91549 -28.66730 -25.91876 -23.68533 -22.93355 -22.58970 -21.58851 -20.98501 -19.51064 -18.41791 -17.81832 -16.89352 -16.51363 -16.34127 -16.15892 -15.64440 -15.38115 -15.14170 -15.11058 -14.75138 -14.46382 -14.16744 -13.83870 -13.38849 -13.29396 -13.08383 -12.98258 -12.94543 -12.58321 -12.54892 -12.45845 -12.32328 -11.88539 -11.48746 -11.32814 -11.02998 -10.82522 -10.61636 -10.43433 -10.21865 -9.97033 -9.75915 -9.35411 -9.32162 -9.25676 -9.10409 -8.71940 -8.13455 -6.71327 -6.34737 -4.40944 -0.47637 0.86825 1.24905 1.28509 1.54663 1.64430 2.24601 2.32754 2.78617 2.86951 3.15757 3.23710 3.27693 3.49085 3.51978 3.99739 4.22456 4.34061 4.53716 4.73013 4.84559 4.93804 4.97395 5.03164 5.15593 5.24462 5.39828 5.44312 5.50664 5.64364 5.65073 5.71343 5.81166 6.07594 6.32704 6.43025 6.58211 6.76268 6.85737 6.89124 6.94766 7.16293 7.21006 7.57845 7.79739 7.79993 8.60179 9.23676 10.76384 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.002861 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.989550 B = 9784.689321 C =12870.920010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.424 3.576 3 O -0.448 6.448 4 C -0.271 4.271 5 C -0.068 4.068 6 C -0.073 4.073 7 C -0.227 4.227 8 C 0.586 3.414 9 O -0.504 6.504 10 N -0.652 5.652 11 C 0.146 3.854 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.114 4.114 16 C -0.093 4.093 17 S -0.173 6.173 18 C 0.079 3.921 19 C -0.520 4.520 20 H 0.069 0.931 21 C 0.069 3.931 22 N -0.888 5.888 23 Si 0.908 3.092 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.280 1.280 27 S 0.226 5.774 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 14.955 7.745 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.301 3.699 3 O -0.324 6.324 4 C -0.391 4.391 5 C -0.101 4.101 6 C -0.106 4.106 7 C -0.349 4.349 8 C 0.373 3.627 9 O -0.381 6.381 10 N -0.296 5.296 11 C 0.045 3.955 12 C -0.136 4.136 13 C -0.143 4.143 14 C -0.134 4.134 15 C -0.138 4.138 16 C -0.208 4.208 17 S 0.073 5.927 18 C -0.067 4.067 19 C -0.560 4.560 20 H 0.087 0.913 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.735 3.265 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.206 1.206 27 S 0.496 5.504 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.249 0.751 34 H 0.161 0.839 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.310 15.657 7.448 19.227 hybrid contribution 0.497 -0.758 -0.340 0.968 sum 8.808 14.899 7.108 18.711 Atomic orbital electron populations 1.22280 0.92625 1.05525 1.05462 1.21532 0.91490 0.85759 0.71122 1.90601 1.72097 1.33146 1.36513 1.25521 0.98488 0.99081 1.16018 1.20743 0.93670 0.98109 0.97544 1.20570 1.01218 0.90376 0.98454 1.24995 0.98289 0.97310 1.14298 1.17080 0.84927 0.83884 0.76834 1.90790 1.21804 1.77145 1.48334 1.43309 1.09955 1.05174 1.71127 1.17141 0.96403 0.80962 1.00947 1.21205 0.96853 0.96325 0.99250 1.20954 0.99488 0.92519 1.01309 1.21075 0.93958 0.99635 0.98757 1.21244 0.98649 0.93592 1.00355 1.21810 1.00043 0.95876 1.03061 1.85019 1.15218 1.22880 1.69554 1.21386 0.97166 0.88268 0.99920 1.20637 1.02527 0.93811 1.39006 0.91255 1.24950 0.98548 0.94608 0.95494 1.69944 1.37833 0.99019 1.45730 0.86268 0.82225 0.78879 0.79141 1.19358 1.20599 1.20600 1.84265 1.04970 0.95050 1.66115 0.87755 0.88482 0.89496 0.82407 0.82155 0.75083 0.83878 0.85925 0.85922 0.84526 0.93608 0.93618 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 10.00 36.01 0.36 -0.80 16 2 C 0.42 3.76 7.22 -31.09 -0.22 3.53 16 3 O -0.45 -5.27 17.56 5.49 0.10 -5.17 16 4 C -0.27 -2.43 6.40 -36.80 -0.24 -2.67 16 5 C -0.07 -0.60 9.89 -40.60 -0.40 -1.00 16 6 C -0.07 -0.71 9.88 -40.70 -0.40 -1.11 16 7 C -0.23 -2.52 6.46 -36.47 -0.24 -2.75 16 8 C 0.59 8.18 7.61 -12.60 -0.10 8.09 16 9 O -0.50 -8.08 13.98 5.25 0.07 -8.01 16 10 N -0.65 -9.56 5.16 -10.73 -0.06 -9.62 16 11 C 0.15 2.43 6.44 -83.46 -0.54 1.89 16 12 C -0.11 -1.78 8.71 -39.42 -0.34 -2.12 16 13 C -0.12 -1.70 10.04 -39.56 -0.40 -2.09 16 14 C -0.11 -1.69 10.04 -39.57 -0.40 -2.08 16 15 C -0.11 -2.01 9.36 -39.40 -0.37 -2.37 16 16 C -0.09 -1.70 6.12 -38.89 -0.24 -1.93 16 17 S -0.17 -3.47 20.55 -107.50 -2.21 -5.68 16 18 C 0.08 1.91 4.09 36.01 0.15 2.05 16 19 C -0.52 -13.65 9.13 -34.44 -0.31 -13.97 16 20 H 0.07 1.80 7.71 -52.48 -0.40 1.39 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 23 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 S 0.23 2.02 21.27 -107.50 -2.29 -0.27 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.43 7.36 -51.93 -0.38 0.05 16 31 H 0.16 1.18 8.04 -52.49 -0.42 0.76 16 32 H 0.16 1.38 8.04 -52.48 -0.42 0.96 16 33 H 0.41 5.60 6.76 -40.82 -0.28 5.32 16 34 H 0.14 2.17 5.79 -52.48 -0.30 1.86 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.14 2.56 5.88 -52.49 -0.31 2.25 16 38 H 0.05 1.16 7.75 -51.93 -0.40 0.76 16 39 H 0.05 1.14 7.75 -51.92 -0.40 0.74 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -30.53 375.31 -10.94 -41.47 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.15 Total: 5.78 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -3.78 Total: -15.62 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.68 Total: -33.33 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.17 Total: -13.18 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -4.50 Total: -5.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.53 -10.94 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953497.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.025 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds