Wall clock time and date at job start Tue Mar 31 2020 06:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76203 * 99.99784 * 2 1 4 4 N 1.32503 * 119.83838 * 359.97438 * 3 2 1 5 5 C 1.31818 * 121.77368 * 180.02562 * 4 3 2 6 6 C 1.38403 * 121.22685 * 359.72264 * 5 4 3 7 7 C 1.38337 * 119.52251 * 0.56115 * 6 5 4 8 8 C 1.39981 * 118.37627 * 359.45052 * 7 6 5 9 9 C 1.47357 * 120.61665 * 180.29454 * 8 7 6 10 10 O 1.21630 * 120.00120 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99833 * 0.02562 * 9 8 7 12 12 C 1.40074 * 119.99679 * 175.50752 * 11 9 8 13 13 C 1.38656 * 120.10387 * 34.67608 * 12 11 9 14 14 C 1.38249 * 120.00844 * 179.97438 * 13 12 11 15 15 C 1.38306 * 120.21082 * 0.02562 * 14 13 12 16 16 C 1.38210 * 120.20090 * 0.02562 * 15 14 13 17 17 C 1.38775 * 119.98756 * 359.70227 * 16 15 14 18 18 S 1.76204 * 120.10384 * 180.32002 * 17 16 15 19 19 C 1.81401 * 103.00046 * 0.25020 * 18 17 16 20 20 C 1.50698 * 109.47353 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99536 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99992 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99669 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99862 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.46790 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.46716 * 209.99092 * 24 22 20 27 27 H 1.48492 * 109.47415 * 329.99699 * 24 22 20 28 28 H 1.08997 * 109.47511 * 60.00188 * 1 2 3 29 29 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47149 * 300.00064 * 1 2 3 31 31 H 1.07992 * 119.38565 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.24128 * 180.31158 * 6 5 4 33 33 H 1.08004 * 120.80729 * 179.72497 * 7 6 5 34 34 H 0.97003 * 120.00137 * 355.49887 * 11 9 8 35 35 H 1.08001 * 119.99802 * 359.97438 * 13 12 11 36 36 H 1.08004 * 119.89862 * 180.02562 * 14 13 12 37 37 H 1.07995 * 119.90274 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.00456 * 180.02562 * 16 15 14 39 39 H 1.08997 * 109.46864 * 300.00266 * 19 18 17 40 40 H 1.08999 * 109.46870 * 59.99863 * 19 18 17 41 41 H 0.97002 * 120.00133 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0985 2.5841 -0.0005 5 6 1.2834 3.8892 -0.0010 6 6 2.5558 4.4337 0.0047 7 6 3.6561 3.5951 -0.0008 8 6 3.4387 2.2123 -0.0001 9 6 4.5749 1.2740 0.0008 10 8 4.3731 0.0746 0.0018 11 7 5.8377 1.7449 0.0015 12 6 6.9164 0.8564 0.0974 13 6 6.8423 -0.3941 -0.4970 14 6 7.9083 -1.2692 -0.4016 15 6 9.0507 -0.9021 0.2862 16 6 9.1334 0.3418 0.8829 17 6 8.0705 1.2289 0.7875 18 16 8.1761 2.8188 1.5398 19 6 9.8297 2.8084 2.2855 20 6 10.0762 4.1233 2.9793 21 1 9.3140 4.8885 2.9726 22 6 11.2742 4.3490 3.6234 23 7 11.4895 5.4967 4.2283 24 14 12.5920 3.0251 3.6354 25 1 13.4781 3.1981 2.4563 26 1 13.3955 3.1379 4.8791 27 1 11.9501 1.6872 3.5803 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.4260 4.5459 -0.0019 32 1 2.6889 5.5055 0.0092 33 1 4.6583 3.9977 -0.0009 34 1 5.9996 2.6991 -0.0645 35 1 5.9518 -0.6845 -1.0346 36 1 7.8488 -2.2427 -0.8656 37 1 9.8803 -1.5898 0.3580 38 1 10.0272 0.6254 1.4188 39 1 9.8964 1.9968 3.0100 40 1 10.5784 2.6629 1.5069 41 1 12.3324 5.6557 4.6812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:33 Heat of formation + Delta-G solvation = 33.579912 kcal Electronic energy + Delta-G solvation = -25874.106580 eV Core-core repulsion = 22164.610685 eV Total energy + Delta-G solvation = -3709.495895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00252 -39.76023 -38.15659 -34.95016 -33.24969 -33.07360 -31.83651 -30.96648 -29.51324 -29.27105 -28.97719 -25.12674 -24.12575 -23.22343 -22.81939 -22.04867 -20.55465 -18.89219 -17.95297 -17.53315 -17.11527 -16.75940 -16.28982 -15.62938 -15.55887 -15.20416 -15.01841 -14.56445 -14.35832 -14.24623 -14.02518 -13.68891 -13.48620 -13.43382 -13.35787 -13.24599 -12.98771 -12.58452 -12.54434 -12.22072 -11.92519 -11.44162 -10.97000 -10.93708 -10.65201 -10.45800 -10.33846 -10.28566 -10.05472 -9.98584 -9.82785 -9.56997 -9.33421 -9.32596 -8.83127 -8.24590 -7.73027 -6.79331 -6.32017 -4.36455 0.23645 0.75927 1.34864 1.40112 1.54559 2.12597 2.17180 2.61635 2.91544 3.12254 3.19403 3.20733 3.34455 3.43131 3.92900 4.14296 4.19028 4.35361 4.42066 4.64491 4.83116 4.99306 5.02511 5.06621 5.07256 5.11282 5.20637 5.41017 5.48722 5.63095 5.65916 5.67171 5.70452 6.02840 6.09155 6.32625 6.37577 6.38449 6.47863 6.55079 6.69849 7.11660 7.23347 7.25743 7.33739 7.93424 8.12933 8.67157 9.22652 10.79558 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.002727 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.819988 B =10263.852517 C =12003.581479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 S 0.042 5.958 3 C 0.156 3.844 4 N -0.496 5.496 5 C 0.144 3.856 6 C -0.189 4.189 7 C -0.019 4.019 8 C -0.180 4.180 9 C 0.561 3.439 10 O -0.495 6.495 11 N -0.655 5.655 12 C 0.148 3.852 13 C -0.102 4.102 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.121 4.121 17 C -0.097 4.097 18 S -0.130 6.130 19 C 0.033 3.967 20 C -0.522 4.522 21 H 0.085 0.915 22 C 0.084 3.916 23 N -0.886 5.886 24 Si 0.876 3.124 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.264 1.264 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.916 -7.848 -11.443 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.354 4.354 2 S 0.285 5.715 3 C -0.093 4.093 4 N -0.209 5.209 5 C -0.018 4.018 6 C -0.212 4.212 7 C -0.046 4.046 8 C -0.193 4.193 9 C 0.349 3.651 10 O -0.372 6.372 11 N -0.300 5.300 12 C 0.048 3.952 13 C -0.124 4.124 14 C -0.144 4.144 15 C -0.132 4.132 16 C -0.146 4.146 17 C -0.213 4.213 18 S 0.117 5.883 19 C -0.115 4.115 20 C -0.561 4.561 21 H 0.103 0.897 22 C -0.122 4.122 23 N -0.523 5.523 24 Si 0.702 3.298 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.250 0.750 35 H 0.158 0.842 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.927 -8.998 -11.209 23.767 hybrid contribution 1.852 0.582 0.164 1.948 sum -17.076 -8.416 -11.044 22.009 Atomic orbital electron populations 1.23805 0.99578 1.05642 1.06335 1.87163 1.01950 0.94698 1.87658 1.23526 0.90160 1.00526 0.95137 1.68173 1.32305 1.04233 1.16164 1.22993 0.97159 0.90923 0.90712 1.22056 0.93012 1.01797 1.04353 1.21807 1.00542 0.91508 0.90762 1.20327 0.93182 0.94427 1.11319 1.17895 0.82306 0.88098 0.76815 1.90715 1.83340 1.14933 1.48235 1.43245 1.04117 1.10650 1.72022 1.17092 0.86711 0.91761 0.99646 1.21136 0.99491 0.92596 0.99152 1.20958 0.93263 0.99508 1.00683 1.21047 0.98070 0.96011 0.98119 1.21135 0.98049 0.94011 1.01415 1.21982 0.96814 1.00827 1.01655 1.85136 1.27796 1.11521 1.63881 1.21729 0.88939 1.02617 0.98174 1.20376 1.03093 0.98020 1.34595 0.89715 1.24820 0.97668 0.95530 0.94142 1.69846 1.25283 1.23044 1.34116 0.86836 0.82100 0.82501 0.78367 1.19669 1.20587 1.18897 0.89800 0.88467 0.89740 0.81831 0.83567 0.83679 0.75042 0.84169 0.85911 0.86043 0.85275 0.93782 0.94268 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.65 101.05 0.97 -0.68 16 2 S 0.04 0.52 19.63 -107.50 -2.11 -1.59 16 3 C 0.16 1.95 7.02 -16.37 -0.11 1.83 16 4 N -0.50 -5.49 9.13 -11.68 -0.11 -5.60 16 5 C 0.14 1.21 11.16 -17.50 -0.20 1.01 16 6 C -0.19 -1.50 10.09 -39.48 -0.40 -1.90 16 7 C -0.02 -0.19 9.64 -38.89 -0.37 -0.56 16 8 C -0.18 -2.24 5.91 -104.64 -0.62 -2.85 16 9 C 0.56 8.02 7.60 -12.55 -0.10 7.92 16 10 O -0.50 -7.92 11.22 5.25 0.06 -7.86 16 11 N -0.66 -9.30 4.97 -10.70 -0.05 -9.36 16 12 C 0.15 2.38 6.32 -83.45 -0.53 1.85 16 13 C -0.10 -1.53 8.70 -39.42 -0.34 -1.87 16 14 C -0.12 -1.65 10.04 -39.55 -0.40 -2.05 16 15 C -0.11 -1.58 10.04 -39.57 -0.40 -1.98 16 16 C -0.12 -2.03 9.36 -39.39 -0.37 -2.40 16 17 C -0.10 -1.72 6.12 -38.90 -0.24 -1.95 16 18 S -0.13 -2.55 20.72 -107.50 -2.23 -4.77 16 19 C 0.03 0.75 3.16 36.00 0.11 0.87 16 20 C -0.52 -14.07 9.68 -34.44 -0.33 -14.41 16 21 H 0.08 2.48 7.96 -52.48 -0.42 2.07 16 22 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 23 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 24 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 28 H 0.08 0.73 8.12 -51.92 -0.42 0.31 16 29 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.08 0.76 8.12 -51.92 -0.42 0.34 16 31 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 33 H 0.15 1.19 6.52 -52.48 -0.34 0.85 16 34 H 0.41 5.19 6.07 -40.82 -0.25 4.94 16 35 H 0.14 2.06 6.19 -52.49 -0.33 1.73 16 36 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 38 H 0.13 2.22 5.88 -52.49 -0.31 1.91 16 39 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 40 H 0.04 0.86 7.19 -51.92 -0.37 0.49 16 41 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -31.43 369.32 -10.67 -42.10 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -4.49 Total: 6.00 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -3.41 Total: -14.95 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.61 Total: -39.91 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.06 Total: -7.86 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -4.34 Total: -6.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.43 -10.67 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.677 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds