Wall clock time and date at job start Tue Mar 31 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76203 * 99.99784 * 2 1 4 4 N 1.32503 * 119.83838 * 359.97438 * 3 2 1 5 5 C 1.31818 * 121.77368 * 180.02562 * 4 3 2 6 6 C 1.38403 * 121.22685 * 359.72264 * 5 4 3 7 7 C 1.38337 * 119.52251 * 0.56115 * 6 5 4 8 8 C 1.39981 * 118.37627 * 359.45052 * 7 6 5 9 9 C 1.47357 * 120.61665 * 180.29454 * 8 7 6 10 10 O 1.21630 * 120.00120 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99833 * 0.02562 * 9 8 7 12 12 C 1.40074 * 119.99679 * 175.50752 * 11 9 8 13 13 C 1.38656 * 120.10387 * 34.67608 * 12 11 9 14 14 C 1.38249 * 120.00844 * 179.97438 * 13 12 11 15 15 C 1.38306 * 120.21082 * 0.02562 * 14 13 12 16 16 C 1.38210 * 120.20090 * 0.02562 * 15 14 13 17 17 C 1.38775 * 119.98756 * 359.70227 * 16 15 14 18 18 S 1.76204 * 120.10384 * 180.32002 * 17 16 15 19 19 C 1.81401 * 103.00046 * 0.25020 * 18 17 16 20 20 C 1.50698 * 109.47353 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99536 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99992 * 179.97438 * 20 19 18 23 23 N 1.31511 * 119.99669 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99862 * 0.02562 * 22 20 19 25 25 H 1.48508 * 109.46790 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.46716 * 209.99092 * 24 22 20 27 27 H 1.48492 * 109.47415 * 329.99699 * 24 22 20 28 28 H 1.08997 * 109.47511 * 60.00188 * 1 2 3 29 29 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47149 * 300.00064 * 1 2 3 31 31 H 1.07992 * 119.38565 * 179.97438 * 5 4 3 32 32 H 1.08005 * 120.24128 * 180.31158 * 6 5 4 33 33 H 1.08004 * 120.80729 * 179.72497 * 7 6 5 34 34 H 0.97003 * 120.00137 * 355.49887 * 11 9 8 35 35 H 1.08001 * 119.99802 * 359.97438 * 13 12 11 36 36 H 1.08004 * 119.89862 * 180.02562 * 14 13 12 37 37 H 1.07995 * 119.90274 * 179.97438 * 15 14 13 38 38 H 1.08001 * 120.00456 * 180.02562 * 16 15 14 39 39 H 1.08997 * 109.46864 * 300.00266 * 19 18 17 40 40 H 1.08999 * 109.46870 * 59.99863 * 19 18 17 41 41 H 0.97002 * 120.00133 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0985 2.5841 -0.0005 5 6 1.2834 3.8892 -0.0010 6 6 2.5558 4.4337 0.0047 7 6 3.6561 3.5951 -0.0008 8 6 3.4387 2.2123 -0.0001 9 6 4.5749 1.2740 0.0008 10 8 4.3731 0.0746 0.0018 11 7 5.8377 1.7449 0.0015 12 6 6.9164 0.8564 0.0974 13 6 6.8423 -0.3941 -0.4970 14 6 7.9083 -1.2692 -0.4016 15 6 9.0507 -0.9021 0.2862 16 6 9.1334 0.3418 0.8829 17 6 8.0705 1.2289 0.7875 18 16 8.1761 2.8188 1.5398 19 6 9.8297 2.8084 2.2855 20 6 10.0762 4.1233 2.9793 21 1 9.3140 4.8885 2.9726 22 6 11.2742 4.3490 3.6234 23 7 11.4895 5.4967 4.2283 24 14 12.5920 3.0251 3.6354 25 1 13.4781 3.1981 2.4563 26 1 13.3955 3.1379 4.8791 27 1 11.9501 1.6872 3.5803 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.4260 4.5459 -0.0019 32 1 2.6889 5.5055 0.0092 33 1 4.6583 3.9977 -0.0009 34 1 5.9996 2.6991 -0.0645 35 1 5.9518 -0.6845 -1.0346 36 1 7.8488 -2.2427 -0.8656 37 1 9.8803 -1.5898 0.3580 38 1 10.0272 0.6254 1.4188 39 1 9.8964 1.9968 3.0100 40 1 10.5784 2.6629 1.5069 41 1 12.3324 5.6557 4.6812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:32 Heat of formation + Delta-G solvation = 15.956880 kcal Electronic energy + Delta-G solvation = -25874.870772 eV Core-core repulsion = 22164.610685 eV Total energy + Delta-G solvation = -3710.260087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.071 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99015 -40.69517 -39.27793 -36.07692 -35.26046 -33.93163 -32.64057 -32.28370 -31.31059 -30.44419 -29.70568 -26.05519 -25.02214 -24.81781 -24.06207 -23.30045 -21.64911 -19.91247 -19.26878 -18.73110 -18.42357 -18.07501 -17.24128 -16.68486 -16.58639 -16.43437 -16.19021 -15.93210 -15.58065 -15.13089 -15.05362 -15.02116 -14.90285 -14.70174 -14.43683 -14.30626 -14.16470 -13.89398 -13.68197 -13.15150 -12.96924 -12.80120 -12.68647 -12.22398 -12.13536 -11.92173 -11.77542 -11.42720 -11.21601 -11.00781 -10.93880 -10.85318 -10.81786 -10.65736 -10.47205 -9.42072 -8.63801 -8.41170 -8.25280 -6.51783 -0.60770 -0.00740 0.22470 0.35126 0.50094 0.66701 1.32980 1.34392 1.36283 1.44094 1.61879 1.72249 1.87835 2.26316 2.60187 2.76677 2.92220 3.32487 3.54397 3.67194 3.86022 3.90693 4.10220 4.16097 4.34140 4.36464 4.38266 4.41582 4.46255 4.48665 4.53147 4.64503 4.76853 4.85424 4.95997 5.00484 5.14976 5.23611 5.27483 5.41260 5.44645 5.54452 5.97794 6.00887 6.18722 6.51850 6.55501 6.85558 7.11522 8.73962 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.002727 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.819988 B =10263.852517 C =12003.581479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 S -0.009 6.009 3 C 0.144 3.856 4 N -0.508 5.508 5 C 0.145 3.855 6 C -0.177 4.177 7 C -0.026 4.026 8 C -0.201 4.201 9 C 0.558 3.442 10 O -0.516 6.516 11 N -0.655 5.655 12 C 0.144 3.856 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.135 4.135 17 C -0.118 4.118 18 S -0.138 6.138 19 C 0.036 3.964 20 C -0.532 4.532 21 H 0.044 0.956 22 C 0.026 3.974 23 N -0.934 5.934 24 Si 0.944 3.056 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.245 1.245 28 H 0.086 0.914 29 H 0.115 0.885 30 H 0.083 0.917 31 H 0.203 0.797 32 H 0.181 0.819 33 H 0.156 0.844 34 H 0.416 0.584 35 H 0.141 0.859 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.123 0.877 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.419 -9.261 -12.577 24.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 S 0.234 5.766 3 C -0.105 4.105 4 N -0.221 5.221 5 C -0.016 4.016 6 C -0.200 4.200 7 C -0.053 4.053 8 C -0.214 4.214 9 C 0.348 3.652 10 O -0.395 6.395 11 N -0.300 5.300 12 C 0.044 3.956 13 C -0.133 4.133 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.159 4.159 17 C -0.234 4.234 18 S 0.107 5.893 19 C -0.112 4.112 20 C -0.571 4.571 21 H 0.063 0.937 22 C -0.175 4.175 23 N -0.572 5.572 24 Si 0.766 3.234 25 H -0.184 1.184 26 H -0.203 1.203 27 H -0.168 1.168 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.219 0.781 32 H 0.199 0.801 33 H 0.174 0.826 34 H 0.255 0.745 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.449 -10.419 -12.363 25.291 hybrid contribution 1.806 1.073 0.444 2.147 sum -17.643 -9.346 -11.920 23.253 Atomic orbital electron populations 1.23748 0.96517 1.06863 1.06341 1.87197 1.05291 0.96055 1.88096 1.23489 0.90503 1.00495 0.95994 1.68207 1.31892 1.05336 1.16636 1.23712 0.98785 0.90379 0.88746 1.22473 0.92102 1.03278 1.02113 1.22061 1.01956 0.90750 0.90552 1.20284 0.92531 0.95191 1.13434 1.18229 0.82581 0.88266 0.76144 1.90698 1.83744 1.15886 1.49150 1.43268 1.03949 1.10760 1.72038 1.17275 0.86615 0.92497 0.99257 1.21315 1.00214 0.92469 0.99280 1.21388 0.92072 1.00356 0.99073 1.21376 0.99205 0.95300 0.96960 1.21271 0.97562 0.95096 1.01984 1.21914 0.98249 0.99823 1.03378 1.84977 1.25527 1.14070 1.64740 1.21479 0.91419 1.00085 0.98237 1.20566 1.02371 0.99033 1.35093 0.93737 1.25789 1.00259 0.97938 0.93503 1.69990 1.26317 1.25464 1.35476 0.85750 0.78857 0.80056 0.78729 1.18413 1.20299 1.16838 0.89510 0.86636 0.89833 0.78052 0.80131 0.82646 0.74504 0.84089 0.82428 0.82820 0.85931 0.93650 0.93390 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.65 113.37 1.09 -1.74 16 2 S -0.01 -0.23 19.63 -56.49 -1.11 -1.34 16 3 C 0.14 3.58 7.02 85.17 0.60 4.18 16 4 N -0.51 -10.59 9.13 -190.86 -1.74 -12.33 16 5 C 0.15 2.06 11.16 84.73 0.95 3.01 16 6 C -0.18 -2.37 10.09 22.33 0.23 -2.14 16 7 C -0.03 -0.49 9.64 22.72 0.22 -0.27 16 8 C -0.20 -5.03 5.91 -19.88 -0.12 -5.15 16 9 C 0.56 16.27 7.60 86.64 0.66 16.93 16 10 O -0.52 -16.86 11.22 -4.13 -0.05 -16.91 16 11 N -0.65 -18.81 4.97 -306.00 -1.52 -20.33 16 12 C 0.14 4.58 6.32 38.24 0.24 4.82 16 13 C -0.11 -3.19 8.70 22.37 0.19 -2.99 16 14 C -0.11 -2.59 10.04 22.29 0.22 -2.37 16 15 C -0.11 -2.74 10.04 22.28 0.22 -2.51 16 16 C -0.13 -4.32 9.36 22.39 0.21 -4.11 16 17 C -0.12 -4.13 6.12 22.71 0.14 -3.99 16 18 S -0.14 -5.51 20.72 -56.49 -1.17 -6.68 16 19 C 0.04 1.64 3.16 71.24 0.23 1.86 16 20 C -0.53 -29.56 9.68 25.60 0.25 -29.31 16 21 H 0.04 2.75 7.96 -2.91 -0.02 2.73 16 22 C 0.03 1.45 5.47 84.66 0.46 1.92 16 23 N -0.93 -55.79 13.96 21.45 0.30 -55.49 16 24 Si 0.94 41.17 27.47 68.60 1.88 43.05 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 28 H 0.09 1.42 8.12 -2.40 -0.02 1.40 16 29 H 0.12 1.51 8.14 -2.40 -0.02 1.49 16 30 H 0.08 1.44 8.12 -2.40 -0.02 1.42 16 31 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 2.47 6.52 -2.91 -0.02 2.45 16 34 H 0.42 10.71 6.07 -92.71 -0.56 10.15 16 35 H 0.14 4.05 6.19 -2.91 -0.02 4.03 16 36 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.12 4.04 5.88 -2.91 -0.02 4.02 16 39 H 0.05 2.04 6.79 -2.39 -0.02 2.03 16 40 H 0.05 2.09 7.19 -2.39 -0.02 2.07 16 41 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -71.22 369.32 2.85 -68.37 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.47 Total: 23.53 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 5.79 Total: -21.86 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -2.96 Total: -88.16 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.05 Total: -16.91 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.05 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -2.28 Total: -8.01 kcal Total: -71.22 2.85 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.325 kcal (2) G-P(sol) polarization free energy of solvation -71.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds