Wall clock time and date at job start Tue Mar 31 2020 07:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.99765 * 2 1 4 4 C 1.38202 * 120.03986 * 180.02562 * 3 2 1 5 5 S 1.76197 * 119.98294 * 179.97438 * 4 3 2 6 6 O 1.42105 * 106.40149 * 1.46203 * 5 4 3 7 7 O 1.42099 * 106.40141 * 228.53955 * 5 4 3 8 8 N 1.65599 * 107.21748 * 114.99728 * 5 4 3 9 9 C 1.36936 * 120.00111 * 270.00315 * 8 5 4 10 10 H 1.07998 * 120.00151 * 130.65641 * 9 8 5 11 11 C 1.38807 * 120.00003 * 310.64913 * 9 8 5 12 12 N 1.31619 * 120.00153 * 335.64708 * 11 9 8 13 13 Si 1.86804 * 119.99952 * 155.64143 * 11 9 8 14 14 H 1.48501 * 109.46893 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47126 * 120.00169 * 13 11 9 16 16 H 1.48501 * 109.47298 * 240.00397 * 13 11 9 17 17 C 1.46500 * 119.99673 * 90.00358 * 8 5 4 18 18 C 1.55238 * 110.57847 * 235.62266 * 17 8 5 19 19 C 1.54898 * 102.58711 * 203.33710 * 18 17 8 20 20 C 1.54268 * 104.30829 * 37.93375 * 19 18 17 21 21 C 1.53871 * 106.60302 * 336.32039 * 20 19 18 22 22 C 1.38384 * 120.03757 * 0.27430 * 4 3 2 23 23 Cl 1.73596 * 120.00325 * 179.73106 * 22 4 3 24 24 C 1.38293 * 119.99956 * 359.47324 * 22 4 3 25 25 C 1.38450 * 120.00555 * 180.02562 * 2 1 3 26 26 F 1.35099 * 120.01436 * 0.02562 * 25 2 1 27 27 H 1.08992 * 109.47379 * 90.00288 * 1 2 3 28 28 H 1.09007 * 109.46796 * 210.00177 * 1 2 3 29 29 H 1.08994 * 109.47207 * 329.99650 * 1 2 3 30 30 H 1.08004 * 119.97889 * 0.02562 * 3 2 1 31 31 H 0.97003 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.08994 * 110.43726 * 358.20481 * 17 8 5 33 33 H 1.09001 * 110.89657 * 85.04905 * 18 17 8 34 34 H 1.09001 * 110.76981 * 321.57011 * 18 17 8 35 35 H 1.08998 * 110.48533 * 279.18873 * 19 18 17 36 36 H 1.08998 * 110.48298 * 156.67695 * 19 18 17 37 37 H 1.08998 * 110.03111 * 95.61294 * 20 19 18 38 38 H 1.09000 * 110.03062 * 216.98762 * 20 19 18 39 39 H 1.08996 * 110.03137 * 119.28187 * 21 20 19 40 40 H 1.08997 * 110.03574 * 240.67176 * 21 20 19 41 41 H 1.07999 * 120.02389 * 180.26146 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5801 1.1982 -0.0005 5 16 4.4595 2.7250 -0.0012 6 8 3.4789 3.7529 0.0337 7 8 5.4415 2.6220 -1.0232 8 7 5.2839 2.8165 1.4321 9 6 4.6936 3.3908 2.5261 10 1 4.7015 2.8770 3.4760 11 6 4.0852 4.6333 2.4142 12 7 4.4573 5.4652 1.4645 13 14 2.7380 5.1249 3.6113 14 1 2.5073 4.0208 4.5773 15 1 3.1511 6.3472 4.3467 16 1 1.4852 5.3976 2.8621 17 6 6.6448 2.2829 1.5296 18 6 6.7417 1.2414 2.6766 19 6 8.2512 1.2610 3.0238 20 6 8.6534 2.7445 2.8919 21 6 7.6322 3.3942 1.9419 22 6 4.2737 0.0007 -0.0068 23 17 6.0096 0.0031 -0.0145 24 6 3.5839 -1.1979 -0.0015 25 6 2.1993 -1.1989 -0.0005 26 9 1.5242 -2.3692 -0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6577 2.1323 0.0004 31 1 4.0318 6.3334 1.3861 32 1 6.9472 1.8361 0.5825 33 1 6.4376 0.2533 2.3312 34 1 6.1442 1.5532 3.5333 35 1 8.8129 0.6492 2.3179 36 1 8.4126 0.9111 4.0433 37 1 8.6170 3.2293 3.8675 38 1 9.6567 2.8235 2.4733 39 1 7.1001 4.1943 2.4564 40 1 8.1396 3.7892 1.0618 41 1 4.1248 -2.1327 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095966119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:49 Heat of formation + Delta-G solvation = -92.785983 kcal Electronic energy + Delta-G solvation = -29944.184058 eV Core-core repulsion = 25698.676933 eV Total energy + Delta-G solvation = -4245.507125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 361.070 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.98413 -38.92475 -37.85742 -36.43393 -35.54348 -34.25156 -33.96242 -32.54900 -31.47217 -30.55443 -27.97113 -26.89483 -26.77765 -24.33877 -23.04287 -21.83062 -20.03958 -19.48158 -18.79391 -17.79380 -17.21119 -16.67652 -16.05233 -15.97099 -15.72543 -15.21663 -14.75832 -14.49309 -14.34907 -13.80311 -13.78217 -13.48509 -13.30906 -13.02972 -12.92601 -12.78008 -12.52307 -12.19966 -12.05265 -11.84531 -11.55047 -11.20223 -11.13736 -11.06018 -10.94384 -10.72413 -10.49017 -10.38480 -10.34070 -10.27859 -10.22551 -10.09954 -9.76558 -9.70675 -9.31610 -8.90695 -8.77311 -8.43576 -7.67129 -6.60800 -4.20138 0.91679 1.20644 1.88937 2.21111 3.16921 3.24533 3.28127 3.41896 4.08269 4.25413 4.57750 4.73452 4.76778 4.85760 5.19866 5.25921 5.30539 5.34142 5.42022 5.51699 5.57367 5.66926 5.76994 5.95232 5.97406 6.08303 6.12151 6.14959 6.19690 6.24854 6.30156 6.34492 6.46024 6.49828 6.54555 6.68436 6.85199 6.91370 7.00044 7.17111 7.34670 7.61270 8.16568 8.82982 9.27639 10.44066 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.006182 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.776159 B = 4528.045115 C = 6132.541861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.141 4.141 3 C 0.006 3.994 4 C -0.653 4.653 5 S 2.530 3.470 6 O -0.946 6.946 7 O -0.999 6.999 8 N -0.796 5.796 9 C -0.263 4.263 10 H 0.086 0.914 11 C 0.060 3.940 12 N -0.764 5.764 13 Si 0.914 3.086 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.273 1.273 17 C 0.152 3.848 18 C -0.141 4.141 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.123 4.123 22 C 0.063 3.937 23 Cl -0.035 7.035 24 C -0.168 4.168 25 C 0.130 3.870 26 F -0.135 7.135 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.281 0.719 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.633 -8.758 1.876 8.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.143 4.143 3 C -0.013 4.013 4 C -0.726 4.726 5 S 2.627 3.373 6 O -0.934 6.934 7 O -0.988 6.988 8 N -0.619 5.619 9 C -0.413 4.413 10 H 0.103 0.897 11 C -0.159 4.159 12 N -0.399 5.399 13 Si 0.739 3.261 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.198 1.198 17 C 0.044 3.956 18 C -0.180 4.180 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.163 4.163 22 C 0.035 3.965 23 Cl -0.006 7.006 24 C -0.188 4.188 25 C 0.110 3.890 26 F -0.113 7.113 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.171 0.829 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.619 -8.269 0.779 8.328 hybrid contribution -0.946 -0.762 0.558 1.336 sum -1.565 -9.030 1.336 9.262 Atomic orbital electron populations 1.20723 0.89783 1.03532 1.02809 1.20145 0.97332 0.92065 1.04731 1.20741 0.91870 0.97814 0.90914 1.32846 1.06294 1.24073 1.09384 1.12403 0.73690 0.74461 0.76724 1.93400 1.61805 1.51976 1.86204 1.93347 1.59206 1.87194 1.59053 1.52863 1.15826 1.64153 1.29027 1.19086 1.34510 0.97764 0.89891 0.89662 1.25700 0.98157 0.94833 0.97217 1.69875 1.34480 1.06560 1.28996 0.86086 0.81383 0.78763 0.79853 1.18785 1.20481 1.19812 1.21880 0.82745 0.93133 0.97835 1.23084 0.95476 0.99061 1.00409 1.22267 0.96816 0.96651 1.00266 1.22079 0.98350 0.95538 0.99760 1.22381 0.95814 0.99422 0.98640 1.20126 0.85587 0.93114 0.97686 1.98403 1.08134 1.98180 1.95885 1.20936 0.92452 0.98516 1.06928 1.17342 0.89358 0.80869 1.01411 1.91474 1.80164 1.45997 1.93704 0.90814 0.91240 0.90455 0.82902 0.90882 0.89413 0.92144 0.90132 0.92588 0.92442 0.92245 0.92953 0.88952 0.92815 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.83 36.00 0.35 -1.03 16 2 C -0.14 -2.27 5.89 -104.55 -0.62 -2.89 16 3 C 0.01 0.11 9.20 -39.60 -0.36 -0.26 16 4 C -0.65 -13.61 5.91 -39.54 -0.23 -13.85 16 5 S 2.53 61.56 4.93 -107.50 -0.53 61.03 16 6 O -0.95 -25.21 13.03 -57.17 -0.75 -25.95 16 7 O -1.00 -25.99 15.25 -57.17 -0.87 -26.86 16 8 N -0.80 -18.22 2.74 -51.64 -0.14 -18.36 16 9 C -0.26 -6.10 7.58 -15.06 -0.11 -6.21 16 10 H 0.09 1.86 6.71 -52.49 -0.35 1.51 16 11 C 0.06 1.45 4.03 -17.43 -0.07 1.38 16 12 N -0.76 -19.78 11.57 55.49 0.64 -19.14 16 13 Si 0.91 18.88 29.62 -169.99 -5.03 13.84 16 14 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 17 C 0.15 3.07 2.10 -66.08 -0.14 2.93 16 18 C -0.14 -2.42 6.09 -24.54 -0.15 -2.57 16 19 C -0.12 -1.78 6.82 -25.07 -0.17 -1.95 16 20 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 21 C -0.12 -2.36 6.42 -25.61 -0.16 -2.53 16 22 C 0.06 1.18 6.30 -39.51 -0.25 0.93 16 23 Cl -0.04 -0.64 20.42 -51.86 -1.06 -1.70 16 24 C -0.17 -2.73 9.81 -39.48 -0.39 -3.12 16 25 C 0.13 2.07 7.24 -39.42 -0.29 1.78 16 26 F -0.13 -1.97 16.48 2.25 0.04 -1.93 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.78 7.64 -51.93 -0.40 0.39 16 29 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.15 2.81 7.33 -52.48 -0.38 2.42 16 31 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.09 1.82 4.39 -51.93 -0.23 1.59 16 33 H 0.06 0.99 6.15 -51.93 -0.32 0.67 16 34 H 0.08 1.42 6.48 -51.93 -0.34 1.09 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.97 7.10 -51.93 -0.37 1.60 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.14 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -28.34 348.48 -10.12 -38.45 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -4.90 Total: 4.75 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.76 Total: -29.37 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.50 Total: -37.50 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -1.62 Total: -52.82 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.84 kcal Atomic # 16 Polarization: 61.56 SS G_CDS: -0.53 Total: 61.03 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.06 Total: -1.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.34 -10.12 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095966119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.333 kcal (2) G-P(sol) polarization free energy of solvation -28.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds