Wall clock time and date at job start Tue Mar 31 2020 07:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38232 * 119.99765 * 2 1 4 4 C 1.38202 * 120.03986 * 180.02562 * 3 2 1 5 5 S 1.76197 * 119.98294 * 179.97438 * 4 3 2 6 6 O 1.42105 * 106.40149 * 1.46203 * 5 4 3 7 7 O 1.42099 * 106.40141 * 228.53955 * 5 4 3 8 8 N 1.65599 * 107.21748 * 114.99728 * 5 4 3 9 9 C 1.36936 * 120.00111 * 270.00315 * 8 5 4 10 10 H 1.07998 * 120.00151 * 130.65641 * 9 8 5 11 11 C 1.38807 * 120.00003 * 310.64913 * 9 8 5 12 12 N 1.31619 * 120.00153 * 335.64708 * 11 9 8 13 13 Si 1.86804 * 119.99952 * 155.64143 * 11 9 8 14 14 H 1.48501 * 109.46893 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47126 * 120.00169 * 13 11 9 16 16 H 1.48501 * 109.47298 * 240.00397 * 13 11 9 17 17 C 1.46500 * 119.99673 * 90.00358 * 8 5 4 18 18 C 1.55238 * 110.57847 * 235.62266 * 17 8 5 19 19 C 1.54898 * 102.58711 * 203.33710 * 18 17 8 20 20 C 1.54268 * 104.30829 * 37.93375 * 19 18 17 21 21 C 1.53871 * 106.60302 * 336.32039 * 20 19 18 22 22 C 1.38384 * 120.03757 * 0.27430 * 4 3 2 23 23 Cl 1.73596 * 120.00325 * 179.73106 * 22 4 3 24 24 C 1.38293 * 119.99956 * 359.47324 * 22 4 3 25 25 C 1.38450 * 120.00555 * 180.02562 * 2 1 3 26 26 F 1.35099 * 120.01436 * 0.02562 * 25 2 1 27 27 H 1.08992 * 109.47379 * 90.00288 * 1 2 3 28 28 H 1.09007 * 109.46796 * 210.00177 * 1 2 3 29 29 H 1.08994 * 109.47207 * 329.99650 * 1 2 3 30 30 H 1.08004 * 119.97889 * 0.02562 * 3 2 1 31 31 H 0.97003 * 120.00150 * 179.97438 * 12 11 9 32 32 H 1.08994 * 110.43726 * 358.20481 * 17 8 5 33 33 H 1.09001 * 110.89657 * 85.04905 * 18 17 8 34 34 H 1.09001 * 110.76981 * 321.57011 * 18 17 8 35 35 H 1.08998 * 110.48533 * 279.18873 * 19 18 17 36 36 H 1.08998 * 110.48298 * 156.67695 * 19 18 17 37 37 H 1.08998 * 110.03111 * 95.61294 * 20 19 18 38 38 H 1.09000 * 110.03062 * 216.98762 * 20 19 18 39 39 H 1.08996 * 110.03137 * 119.28187 * 21 20 19 40 40 H 1.08997 * 110.03574 * 240.67176 * 21 20 19 41 41 H 1.07999 * 120.02389 * 180.26146 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5801 1.1982 -0.0005 5 16 4.4595 2.7250 -0.0012 6 8 3.4789 3.7529 0.0337 7 8 5.4415 2.6220 -1.0232 8 7 5.2839 2.8165 1.4321 9 6 4.6936 3.3908 2.5261 10 1 4.7015 2.8770 3.4760 11 6 4.0852 4.6333 2.4142 12 7 4.4573 5.4652 1.4645 13 14 2.7380 5.1249 3.6113 14 1 2.5073 4.0208 4.5773 15 1 3.1511 6.3472 4.3467 16 1 1.4852 5.3976 2.8621 17 6 6.6448 2.2829 1.5296 18 6 6.7417 1.2414 2.6766 19 6 8.2512 1.2610 3.0238 20 6 8.6534 2.7445 2.8919 21 6 7.6322 3.3942 1.9419 22 6 4.2737 0.0007 -0.0068 23 17 6.0096 0.0031 -0.0145 24 6 3.5839 -1.1979 -0.0015 25 6 2.1993 -1.1989 -0.0005 26 9 1.5242 -2.3692 -0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6577 2.1323 0.0004 31 1 4.0318 6.3334 1.3861 32 1 6.9472 1.8361 0.5825 33 1 6.4376 0.2533 2.3312 34 1 6.1442 1.5532 3.5333 35 1 8.8129 0.6492 2.3179 36 1 8.4126 0.9111 4.0433 37 1 8.6170 3.2293 3.8675 38 1 9.6567 2.8235 2.4733 39 1 7.1001 4.1943 2.4564 40 1 8.1396 3.7892 1.0618 41 1 4.1248 -2.1327 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095966119.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:48 Heat of formation + Delta-G solvation = -108.041205 kcal Electronic energy + Delta-G solvation = -29944.845574 eV Core-core repulsion = 25698.676933 eV Total energy + Delta-G solvation = -4246.168641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 361.070 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -50.21394 -40.29526 -39.34975 -37.92291 -37.40283 -36.10315 -35.73397 -33.79939 -33.21544 -31.96557 -29.35791 -28.41166 -28.00419 -26.05294 -24.44506 -23.18157 -21.49610 -20.92645 -20.53822 -19.19621 -18.81348 -18.05639 -17.70027 -17.67053 -16.99033 -16.91852 -16.27255 -15.95996 -15.75406 -15.42393 -15.19330 -14.79767 -14.63017 -14.46661 -14.28310 -14.18247 -13.92026 -13.72514 -13.61019 -13.20137 -13.12834 -12.85939 -12.52644 -12.47469 -12.37201 -12.35050 -12.20143 -12.11451 -11.95273 -11.85214 -11.79234 -11.53154 -11.41308 -11.10605 -10.85298 -10.57603 -10.29324 -9.78107 -9.42445 -8.42280 -6.05208 -0.50843 -0.15401 0.09748 0.78190 1.51132 1.56323 1.65695 2.02025 2.36922 2.82337 2.95943 3.03920 3.41104 3.50612 3.57483 3.85455 3.97998 4.01489 4.12612 4.20135 4.32673 4.43528 4.46553 4.63569 4.65954 4.73971 4.80418 4.83212 4.88859 4.92487 5.01510 5.02448 5.03639 5.20376 5.25634 5.27249 5.42978 5.50905 5.55203 5.61240 5.68411 5.99750 6.34476 7.04078 7.48951 8.63136 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.006182 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.776159 B = 4528.045115 C = 6132.541861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.133 4.133 3 C -0.010 4.010 4 C -0.678 4.678 5 S 2.533 3.467 6 O -0.981 6.981 7 O -1.029 7.029 8 N -0.805 5.805 9 C -0.265 4.265 10 H 0.099 0.901 11 C 0.021 3.979 12 N -0.807 5.807 13 Si 0.965 3.035 14 H -0.244 1.244 15 H -0.270 1.270 16 H -0.287 1.287 17 C 0.140 3.860 18 C -0.135 4.135 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.126 4.126 22 C 0.049 3.951 23 Cl -0.034 7.034 24 C -0.159 4.159 25 C 0.139 3.861 26 F -0.120 7.120 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.278 0.722 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.178 -11.530 3.463 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.135 4.135 3 C -0.029 4.029 4 C -0.757 4.757 5 S 2.635 3.365 6 O -0.969 6.969 7 O -1.018 7.018 8 N -0.628 5.628 9 C -0.414 4.414 10 H 0.116 0.884 11 C -0.195 4.195 12 N -0.444 5.444 13 Si 0.788 3.212 14 H -0.166 1.166 15 H -0.196 1.196 16 H -0.213 1.213 17 C 0.033 3.967 18 C -0.174 4.174 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.165 4.165 22 C 0.021 3.979 23 Cl -0.005 7.005 24 C -0.178 4.178 25 C 0.119 3.881 26 F -0.099 7.099 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -1.121 -11.015 2.390 11.327 hybrid contribution -0.831 -0.042 -0.031 0.832 sum -1.951 -11.057 2.360 11.473 Atomic orbital electron populations 1.20868 0.86965 1.04825 1.04323 1.20445 0.99302 0.91034 1.02684 1.20784 0.91267 0.98909 0.91936 1.32313 1.07293 1.23315 1.12758 1.11742 0.73279 0.74820 0.76653 1.93350 1.62651 1.54229 1.86670 1.93292 1.60289 1.87942 1.60298 1.52774 1.16684 1.64948 1.28372 1.19375 1.34198 0.97540 0.90310 0.88363 1.26535 0.99672 0.94893 0.98368 1.69969 1.36030 1.07032 1.31386 0.85306 0.78228 0.79347 0.78320 1.16639 1.19553 1.21269 1.22133 0.81526 0.94237 0.98795 1.23022 0.97544 0.98180 0.98702 1.22270 0.94654 0.96119 1.02172 1.22040 0.97900 0.95878 0.99166 1.22368 0.96519 0.98832 0.98824 1.20218 0.85824 0.93360 0.98526 1.98395 1.07978 1.98168 1.95935 1.21214 0.92798 0.98686 1.05139 1.17352 0.89321 0.81223 1.00184 1.91518 1.79833 1.45127 1.93400 0.89058 0.89502 0.89666 0.83515 0.91255 0.90285 0.91405 0.90754 0.91351 0.89825 0.91250 0.91072 0.91659 0.94193 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.47 9.83 71.23 0.70 -1.77 16 2 C -0.13 -4.00 5.89 -19.82 -0.12 -4.11 16 3 C -0.01 -0.36 9.20 22.26 0.20 -0.16 16 4 C -0.68 -28.53 5.91 22.30 0.13 -28.40 16 5 S 2.53 127.94 4.93 -56.49 -0.28 127.66 16 6 O -0.98 -54.82 13.03 -128.00 -1.67 -56.48 16 7 O -1.03 -55.92 15.25 -128.00 -1.95 -57.87 16 8 N -0.80 -37.80 2.74 -317.29 -0.87 -38.67 16 9 C -0.26 -12.51 7.58 84.03 0.64 -11.87 16 10 H 0.10 4.27 6.71 -2.91 -0.02 4.26 16 11 C 0.02 1.03 4.03 84.86 0.34 1.37 16 12 N -0.81 -43.79 11.57 21.65 0.25 -43.54 16 13 Si 0.97 38.93 29.62 68.60 2.03 40.96 16 14 H -0.24 -8.92 7.11 99.48 0.71 -8.21 16 15 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 17 C 0.14 5.72 2.10 46.19 0.10 5.82 16 18 C -0.14 -4.46 6.09 32.01 0.19 -4.26 16 19 C -0.11 -3.02 6.82 31.67 0.22 -2.80 16 20 C -0.11 -3.24 6.80 31.32 0.21 -3.03 16 21 C -0.13 -4.92 6.42 31.32 0.20 -4.72 16 22 C 0.05 1.79 6.30 22.32 0.14 1.93 16 23 Cl -0.03 -1.21 20.42 -2.72 -0.06 -1.27 16 24 C -0.16 -4.74 9.81 22.34 0.22 -4.52 16 25 C 0.14 4.00 7.24 22.37 0.16 4.16 16 26 F -0.12 -3.03 16.48 44.97 0.74 -2.29 16 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.62 7.64 -2.38 -0.02 1.60 16 29 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 30 H 0.15 5.54 7.33 -2.91 -0.02 5.52 16 31 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.08 3.35 4.39 -2.39 -0.01 3.34 16 33 H 0.07 2.11 6.15 -2.39 -0.01 2.09 16 34 H 0.07 2.53 6.48 -2.39 -0.02 2.51 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.89 7.10 -2.39 -0.02 2.87 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.17 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -63.91 348.48 2.62 -61.29 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.07 Total: 22.57 kcal Atomic # 6 Polarization: -55.71 SS G_CDS: 3.34 Total: -52.37 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -0.62 Total: -82.20 kcal Atomic # 8 Polarization: -110.73 SS G_CDS: -3.62 Total: -114.35 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.74 Total: -2.29 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: 127.94 SS G_CDS: -0.28 Total: 127.66 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.06 Total: -1.27 kcal Total: -63.91 2.62 -61.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095966119.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.751 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds