Wall clock time and date at job start Tue Mar 31 2020 07:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47418 * 2 1 4 4 C 1.53010 * 109.46835 * 240.00181 * 2 1 3 5 5 N 1.46493 * 109.47077 * 62.68183 * 4 2 1 6 6 S 1.65600 * 120.00156 * 164.99797 * 5 4 2 7 7 O 1.42102 * 106.40240 * 178.53450 * 6 5 4 8 8 O 1.42095 * 106.40109 * 311.46037 * 6 5 4 9 9 C 1.76200 * 107.21603 * 64.99944 * 6 5 4 10 10 H 1.08006 * 120.00170 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00050 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99934 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 120.00150 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.46842 * 89.99917 * 13 11 9 15 15 H 1.48500 * 109.47384 * 209.99854 * 13 11 9 16 16 H 1.48494 * 109.47072 * 330.00363 * 13 11 9 17 17 C 1.50698 * 109.47244 * 120.00336 * 2 1 3 18 18 C 1.38239 * 120.00529 * 359.69399 * 17 2 1 19 19 C 1.38221 * 120.00935 * 179.74324 * 18 17 2 20 20 C 1.38256 * 120.01944 * 0.28171 * 19 18 17 21 21 C 1.38191 * 120.01323 * 359.97438 * 20 19 18 22 22 C 1.38312 * 120.00561 * 179.97438 * 17 2 1 23 23 Br 1.89095 * 120.00783 * 359.97438 * 22 17 2 24 24 H 1.09000 * 109.46898 * 296.77114 * 1 2 3 25 25 H 1.09000 * 109.47369 * 56.76950 * 1 2 3 26 26 H 1.09002 * 109.47130 * 176.77405 * 1 2 3 27 27 H 1.08992 * 109.46977 * 176.75638 * 3 2 1 28 28 H 1.09000 * 109.46672 * 296.76296 * 3 2 1 29 29 H 1.09000 * 109.46534 * 56.75720 * 3 2 1 30 30 H 1.09000 * 109.46631 * 182.67587 * 4 2 1 31 31 H 1.08994 * 109.46849 * 302.67682 * 4 2 1 32 32 H 0.97004 * 119.99894 * 344.99792 * 5 4 2 33 33 H 0.97003 * 119.99906 * 180.02562 * 12 11 9 34 34 H 1.07996 * 119.99501 * 0.02562 * 18 17 2 35 35 H 1.08003 * 119.98905 * 180.24931 * 19 18 17 36 36 H 1.08003 * 119.99237 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00956 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 7 1.6051 0.0057 -2.4446 6 16 2.3053 -0.3166 -3.9102 7 8 1.6511 0.5148 -4.8589 8 8 3.7100 -0.2963 -3.6969 9 6 1.8901 -1.9759 -4.3330 10 1 1.2808 -2.5671 -3.6653 11 6 2.3438 -2.5201 -5.5158 12 7 3.0861 -1.8005 -6.3286 13 14 1.9043 -4.2796 -5.9637 14 1 0.6345 -4.2918 -6.7337 15 1 2.9899 -4.8660 -6.7900 16 1 1.7389 -5.0795 -4.7236 17 6 2.0323 -0.7105 1.2304 18 6 1.1341 -1.2304 2.1436 19 6 1.5948 -1.8867 3.2695 20 6 2.9539 -2.0184 3.4858 21 6 3.8526 -1.4944 2.5762 22 6 3.3921 -0.8374 1.4491 23 35 4.6212 -0.1201 0.2039 24 1 -0.3633 0.4629 0.9175 25 1 -0.3634 0.5632 -0.8596 26 1 -0.3633 -1.0261 -0.0578 27 1 3.1284 1.4430 0.0581 28 1 1.7249 1.9393 -0.9176 29 1 1.6300 1.9728 0.8595 30 1 3.1289 -0.7630 -1.2257 31 1 1.6379 -1.7341 -1.2737 32 1 0.9069 0.6758 -2.3774 33 1 3.4050 -2.1833 -7.1609 34 1 0.0724 -1.1278 1.9750 35 1 0.8927 -2.2963 3.9807 36 1 3.3134 -2.5309 4.3659 37 1 4.9144 -1.5976 2.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095975111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:13 Heat of formation + Delta-G solvation = -62.988051 kcal Electronic energy + Delta-G solvation = -22767.278059 eV Core-core repulsion = 19296.262594 eV Total energy + Delta-G solvation = -3471.015465 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12282 -37.01736 -35.08472 -33.84885 -33.08709 -32.63099 -32.53439 -29.86498 -29.08270 -27.29001 -26.08541 -25.65897 -22.73069 -22.15023 -19.34184 -18.95824 -17.57981 -16.77627 -16.15485 -15.73588 -15.27046 -15.06315 -14.68213 -14.19063 -14.10718 -13.71095 -13.65697 -13.58547 -13.40679 -13.00734 -12.19045 -12.00823 -11.87167 -11.78289 -11.58397 -11.20464 -11.16881 -11.12294 -11.02247 -10.81623 -10.57149 -10.41120 -10.20020 -10.17848 -10.08038 -9.38281 -9.19539 -8.97722 -8.83073 -8.60290 -8.25188 -6.64400 -5.25262 0.99280 1.16436 1.69097 2.45009 3.09718 3.16401 3.23162 3.49581 4.10938 4.45819 4.62792 4.69965 4.78258 4.93004 5.00768 5.06532 5.14050 5.28179 5.32323 5.56696 5.71265 5.78586 5.86547 5.86815 5.96936 5.99932 6.08481 6.18421 6.19523 6.31469 6.32195 6.40650 6.55316 6.62685 6.69606 6.94162 7.37872 7.99103 8.06007 8.95014 10.29585 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004272 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.329991 B = 6552.927688 C = 6734.329107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.161 4.161 4 C 0.119 3.881 5 N -1.131 6.131 6 S 2.716 3.284 7 O -1.010 7.010 8 O -1.003 7.003 9 C -1.020 5.020 10 H 0.101 0.899 11 C 0.133 3.867 12 N -0.846 5.846 13 Si 0.918 3.082 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.263 1.263 17 C -0.034 4.034 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.089 4.089 22 C -0.095 4.095 23 Br -0.016 7.016 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.399 0.601 33 H 0.290 0.710 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 0.894 20.654 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.219 4.219 4 C -0.008 4.008 5 N -0.887 5.887 6 S 2.815 3.185 7 O -1.000 7.000 8 O -0.993 6.993 9 C -1.153 5.153 10 H 0.119 0.881 11 C -0.084 4.084 12 N -0.476 5.476 13 Si 0.742 3.258 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.037 4.037 18 C -0.134 4.134 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.174 4.174 23 Br 0.072 6.928 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.376 1.680 19.513 19.589 hybrid contribution -1.161 -1.490 0.183 1.898 sum -1.537 0.190 19.696 19.757 Atomic orbital electron populations 1.21964 0.93565 1.02471 1.02029 1.19792 0.96405 0.96010 0.91640 1.22292 1.04009 0.93551 1.02024 1.21601 1.02103 0.94118 0.83009 1.55942 1.55247 1.52900 1.24584 1.00352 0.72693 0.75945 0.69489 1.93369 1.76822 1.70751 1.59104 1.93354 1.32207 1.88997 1.84700 1.30583 1.46561 1.23715 1.14467 0.88098 1.24724 0.90267 0.99889 0.93541 1.69900 1.28618 1.38075 1.10973 0.86211 0.78902 0.81613 0.79114 1.19243 1.19992 1.18694 1.19741 0.91338 0.96598 0.96026 1.21228 1.00106 0.98180 0.93849 1.21268 0.95727 0.98034 0.97321 1.21122 0.93228 1.00486 0.99433 1.21110 1.00463 0.96578 0.92697 1.21902 0.93694 1.04792 0.97042 1.96716 1.56668 1.83459 1.55991 0.92348 0.91515 0.91914 0.90254 0.91339 0.92942 0.88549 0.92538 0.76929 0.89993 0.84607 0.85587 0.85425 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 6.95 37.16 0.26 -1.40 16 2 C -0.04 -0.51 0.51 -155.66 -0.08 -0.59 16 3 C -0.16 -2.19 8.08 37.16 0.30 -1.89 16 4 C 0.12 2.14 4.86 -4.04 -0.02 2.12 16 5 N -1.13 -22.68 5.28 -10.61 -0.06 -22.74 16 6 S 2.72 72.77 5.02 -107.50 -0.54 72.23 16 7 O -1.01 -29.95 18.02 -57.17 -1.03 -30.98 16 8 O -1.00 -29.24 17.49 -57.17 -1.00 -30.24 16 9 C -1.02 -28.48 9.72 30.60 0.30 -28.18 16 10 H 0.10 2.59 7.81 -52.48 -0.41 2.18 16 11 C 0.13 3.78 5.46 -17.82 -0.10 3.68 16 12 N -0.85 -25.23 13.19 55.43 0.73 -24.50 16 13 Si 0.92 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 16 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 17 C -0.03 -0.44 4.76 -104.60 -0.50 -0.94 16 18 C -0.11 -1.21 8.98 -39.59 -0.36 -1.57 16 19 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 20 C -0.12 -1.13 10.04 -39.59 -0.40 -1.53 16 21 C -0.09 -0.97 9.79 -39.56 -0.39 -1.36 16 22 C -0.09 -1.25 5.95 -39.51 -0.24 -1.49 16 23 Br -0.02 -0.24 26.55 -68.01 -1.81 -2.05 16 24 H 0.06 0.55 7.29 -51.93 -0.38 0.17 16 25 H 0.07 0.78 6.84 -51.93 -0.36 0.42 16 26 H 0.06 0.70 7.72 -51.93 -0.40 0.30 16 27 H 0.08 1.14 4.43 -51.93 -0.23 0.91 16 28 H 0.07 0.95 6.93 -51.93 -0.36 0.59 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.87 4.03 -51.93 -0.21 1.66 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.40 6.89 6.51 -34.47 -0.22 6.67 16 33 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.14 1.19 5.89 -52.49 -0.31 0.88 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -35.30 327.80 -9.52 -44.82 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.13 Total: 7.11 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: -1.61 Total: -34.48 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.68 Total: -47.23 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -2.03 Total: -61.22 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 72.77 SS G_CDS: -0.54 Total: 72.23 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -1.81 Total: -2.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.30 -9.52 -44.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.164 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds