Wall clock time and date at job start Tue Mar 31 2020 07:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47418 * 2 1 4 4 C 1.53010 * 109.46835 * 240.00181 * 2 1 3 5 5 N 1.46493 * 109.47077 * 62.68183 * 4 2 1 6 6 S 1.65600 * 120.00156 * 164.99797 * 5 4 2 7 7 O 1.42102 * 106.40240 * 178.53450 * 6 5 4 8 8 O 1.42095 * 106.40109 * 311.46037 * 6 5 4 9 9 C 1.76200 * 107.21603 * 64.99944 * 6 5 4 10 10 H 1.08006 * 120.00170 * 359.97438 * 9 6 5 11 11 C 1.37875 * 120.00050 * 180.02562 * 9 6 5 12 12 N 1.31512 * 119.99934 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 120.00150 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.46842 * 89.99917 * 13 11 9 15 15 H 1.48500 * 109.47384 * 209.99854 * 13 11 9 16 16 H 1.48494 * 109.47072 * 330.00363 * 13 11 9 17 17 C 1.50698 * 109.47244 * 120.00336 * 2 1 3 18 18 C 1.38239 * 120.00529 * 359.69399 * 17 2 1 19 19 C 1.38221 * 120.00935 * 179.74324 * 18 17 2 20 20 C 1.38256 * 120.01944 * 0.28171 * 19 18 17 21 21 C 1.38191 * 120.01323 * 359.97438 * 20 19 18 22 22 C 1.38312 * 120.00561 * 179.97438 * 17 2 1 23 23 Br 1.89095 * 120.00783 * 359.97438 * 22 17 2 24 24 H 1.09000 * 109.46898 * 296.77114 * 1 2 3 25 25 H 1.09000 * 109.47369 * 56.76950 * 1 2 3 26 26 H 1.09002 * 109.47130 * 176.77405 * 1 2 3 27 27 H 1.08992 * 109.46977 * 176.75638 * 3 2 1 28 28 H 1.09000 * 109.46672 * 296.76296 * 3 2 1 29 29 H 1.09000 * 109.46534 * 56.75720 * 3 2 1 30 30 H 1.09000 * 109.46631 * 182.67587 * 4 2 1 31 31 H 1.08994 * 109.46849 * 302.67682 * 4 2 1 32 32 H 0.97004 * 119.99894 * 344.99792 * 5 4 2 33 33 H 0.97003 * 119.99906 * 180.02562 * 12 11 9 34 34 H 1.07996 * 119.99501 * 0.02562 * 18 17 2 35 35 H 1.08003 * 119.98905 * 180.24931 * 19 18 17 36 36 H 1.08003 * 119.99237 * 179.97438 * 20 19 18 37 37 H 1.08006 * 120.00956 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 7 1.6051 0.0057 -2.4446 6 16 2.3053 -0.3166 -3.9102 7 8 1.6511 0.5148 -4.8589 8 8 3.7100 -0.2963 -3.6969 9 6 1.8901 -1.9759 -4.3330 10 1 1.2808 -2.5671 -3.6653 11 6 2.3438 -2.5201 -5.5158 12 7 3.0861 -1.8005 -6.3286 13 14 1.9043 -4.2796 -5.9637 14 1 0.6345 -4.2918 -6.7337 15 1 2.9899 -4.8660 -6.7900 16 1 1.7389 -5.0795 -4.7236 17 6 2.0323 -0.7105 1.2304 18 6 1.1341 -1.2304 2.1436 19 6 1.5948 -1.8867 3.2695 20 6 2.9539 -2.0184 3.4858 21 6 3.8526 -1.4944 2.5762 22 6 3.3921 -0.8374 1.4491 23 35 4.6212 -0.1201 0.2039 24 1 -0.3633 0.4629 0.9175 25 1 -0.3634 0.5632 -0.8596 26 1 -0.3633 -1.0261 -0.0578 27 1 3.1284 1.4430 0.0581 28 1 1.7249 1.9393 -0.9176 29 1 1.6300 1.9728 0.8595 30 1 3.1289 -0.7630 -1.2257 31 1 1.6379 -1.7341 -1.2737 32 1 0.9069 0.6758 -2.3774 33 1 3.4050 -2.1833 -7.1609 34 1 0.0724 -1.1278 1.9750 35 1 0.8927 -2.2963 3.9807 36 1 3.3134 -2.5309 4.3659 37 1 4.9144 -1.5976 2.7450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095975111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:12 Heat of formation + Delta-G solvation = -88.337133 kcal Electronic energy + Delta-G solvation = -22768.377278 eV Core-core repulsion = 19296.262594 eV Total energy + Delta-G solvation = -3472.114684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03826 -38.10997 -37.31158 -36.08613 -35.18821 -34.06301 -33.45284 -30.77157 -29.99345 -28.28050 -28.21576 -27.01714 -23.67283 -22.95917 -21.05590 -20.33317 -19.40935 -18.34039 -17.57791 -17.26212 -16.71171 -16.46330 -15.92403 -15.80175 -15.41390 -15.13573 -15.05173 -14.63995 -14.42312 -14.18459 -13.98656 -13.34219 -13.15679 -13.01191 -12.86363 -12.68072 -12.60100 -12.47522 -12.46156 -12.34765 -12.30938 -12.05034 -11.91945 -11.59552 -11.44470 -11.24341 -10.97314 -10.49194 -9.91415 -9.75983 -9.51982 -8.74173 -7.46659 0.15985 0.32904 0.46007 0.73605 1.33048 1.33694 1.49562 2.20991 2.58827 2.70040 3.03474 3.59686 3.67787 3.80313 3.93164 4.03832 4.19241 4.28014 4.43286 4.49247 4.57361 4.71661 4.74860 4.76165 4.87548 4.89669 4.98382 5.06519 5.12418 5.18711 5.25296 5.31671 5.37480 5.43496 5.55299 5.57927 5.90721 5.94555 6.44253 6.79359 8.22031 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.014375 B = 0.004272 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.329991 B = 6552.927688 C = 6734.329107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.029 4.029 3 C -0.165 4.165 4 C 0.109 3.891 5 N -1.113 6.113 6 S 2.720 3.280 7 O -1.048 7.048 8 O -1.036 7.036 9 C -1.040 5.040 10 H 0.118 0.882 11 C 0.070 3.930 12 N -0.894 5.894 13 Si 0.988 3.012 14 H -0.253 1.253 15 H -0.262 1.262 16 H -0.248 1.248 17 C -0.055 4.055 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.112 4.112 23 Br -0.053 7.053 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.412 0.588 33 H 0.298 0.702 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 -1.116 23.316 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.223 4.223 4 C -0.018 4.018 5 N -0.873 5.873 6 S 2.821 3.179 7 O -1.038 7.038 8 O -1.026 7.026 9 C -1.174 5.174 10 H 0.136 0.864 11 C -0.143 4.143 12 N -0.525 5.525 13 Si 0.806 3.194 14 H -0.177 1.177 15 H -0.187 1.187 16 H -0.171 1.171 17 C -0.057 4.057 18 C -0.134 4.134 19 C -0.117 4.117 20 C -0.135 4.135 21 C -0.119 4.119 22 C -0.191 4.191 23 Br 0.035 6.965 24 H 0.104 0.896 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.247 0.753 33 H 0.108 0.892 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.339 -0.300 22.188 22.313 hybrid contribution -0.559 -0.850 -0.483 1.127 sum -2.899 -1.151 21.706 21.929 Atomic orbital electron populations 1.21998 0.91610 1.03131 1.03282 1.19683 0.97887 0.95403 0.90118 1.22318 1.03508 0.93974 1.02462 1.21844 1.01625 0.94493 0.83839 1.55280 1.55208 1.53378 1.23438 0.99846 0.72136 0.75691 0.70256 1.93305 1.77254 1.71638 1.61615 1.93306 1.34459 1.89279 1.85540 1.30922 1.46847 1.24388 1.15213 0.86414 1.26002 0.89749 1.05233 0.93297 1.69995 1.30034 1.40590 1.11915 0.85171 0.79416 0.75211 0.79646 1.17739 1.18660 1.17127 1.19724 0.91538 0.98085 0.96372 1.21502 1.00697 0.97527 0.93653 1.21702 0.96300 0.96593 0.97060 1.21530 0.93163 0.99263 0.99586 1.21345 1.01581 0.96520 0.92425 1.21989 0.93394 1.06374 0.97376 1.96683 1.58124 1.84113 1.57627 0.89576 0.92025 0.91328 0.91397 0.92334 0.90731 0.89986 0.92635 0.75263 0.89186 0.82635 0.82160 0.82320 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 6.95 71.98 0.50 -2.47 16 2 C -0.03 -0.78 0.51 -52.92 -0.03 -0.81 16 3 C -0.16 -4.44 8.08 71.98 0.58 -3.86 16 4 C 0.11 3.93 4.86 86.38 0.42 4.35 16 5 N -1.11 -45.44 5.28 -187.49 -0.99 -46.43 16 6 S 2.72 150.36 5.02 -56.49 -0.28 150.08 16 7 O -1.05 -64.33 18.02 -128.00 -2.31 -66.64 16 8 O -1.04 -63.07 17.49 -128.00 -2.24 -65.31 16 9 C -1.04 -58.64 9.72 67.73 0.66 -57.98 16 10 H 0.12 5.99 7.81 -2.91 -0.02 5.97 16 11 C 0.07 3.97 5.46 84.65 0.46 4.43 16 12 N -0.89 -54.48 13.19 21.45 0.28 -54.19 16 13 Si 0.99 42.09 29.54 68.60 2.03 44.11 16 14 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 17 C -0.05 -1.31 4.76 -19.85 -0.09 -1.41 16 18 C -0.12 -2.02 8.98 22.27 0.20 -1.82 16 19 C -0.10 -1.34 10.05 22.27 0.22 -1.12 16 20 C -0.12 -1.70 10.04 22.26 0.22 -1.48 16 21 C -0.10 -1.99 9.79 22.28 0.22 -1.77 16 22 C -0.11 -2.88 5.95 22.31 0.13 -2.75 16 23 Br -0.05 -1.66 26.55 -20.37 -0.54 -2.20 16 24 H 0.09 1.31 7.29 -2.39 -0.02 1.30 16 25 H 0.06 1.33 6.84 -2.39 -0.02 1.31 16 26 H 0.07 1.34 7.72 -2.39 -0.02 1.33 16 27 H 0.07 2.01 4.43 -2.39 -0.01 2.00 16 28 H 0.06 1.64 6.93 -2.39 -0.02 1.62 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 3.28 4.03 -2.39 -0.01 3.27 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.41 14.45 6.51 -96.74 -0.63 13.82 16 33 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 34 H 0.16 2.04 5.89 -2.91 -0.02 2.02 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -79.10 327.80 -0.07 -79.17 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.48 Total: 28.09 kcal Atomic # 6 Polarization: -70.18 SS G_CDS: 3.50 Total: -66.68 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -0.71 Total: -100.62 kcal Atomic # 8 Polarization: -127.40 SS G_CDS: -4.54 Total: -131.94 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 150.36 SS G_CDS: -0.28 Total: 150.08 kcal Atomic # 35 Polarization: -1.66 SS G_CDS: -0.54 Total: -2.20 kcal Total: -79.10 -0.07 -79.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095975111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.170 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds