Wall clock time and date at job start Tue Mar 31 2020 05:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38818 * 119.99218 * 2 1 4 4 C 1.38549 * 118.04369 * 179.72938 * 3 2 1 5 5 C 1.39506 * 117.90407 * 0.52206 * 4 3 2 6 6 N 1.39078 * 120.16061 * 179.76285 * 5 4 3 7 7 C 1.47146 * 121.63248 * 167.77747 * 6 5 4 8 8 C 1.53242 * 108.84663 * 225.66919 * 7 6 5 9 9 C 1.53275 * 109.45228 * 295.71962 * 8 7 6 10 10 C 1.51176 * 108.67986 * 49.43219 * 9 8 7 11 11 S 1.70687 * 126.40549 * 161.67333 * 10 9 8 12 12 C 1.76020 * 90.46403 * 180.17496 * 11 10 9 13 13 C 1.47120 * 125.46525 * 179.89232 * 12 11 10 14 14 O 1.21642 * 120.00067 * 359.71874 * 13 12 11 15 15 N 1.34781 * 119.99948 * 179.71764 * 13 12 11 16 16 C 1.46496 * 120.00066 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47357 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99458 * 359.97438 * 17 16 15 19 19 C 1.37866 * 120.00153 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00104 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00276 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47042 * 89.99610 * 21 19 17 23 23 H 1.48498 * 109.47099 * 209.99767 * 21 19 17 24 24 H 1.48497 * 109.46718 * 329.99859 * 21 19 17 25 25 N 1.30477 * 109.06238 * 359.62708 * 12 11 10 26 26 C 1.31293 * 116.50294 * 0.24801 * 25 12 11 27 27 N 1.32511 * 119.67604 * 359.48926 * 5 4 3 28 28 N 1.28341 * 122.07439 * 0.25247 * 27 5 4 29 29 H 1.08995 * 109.47110 * 269.97538 * 1 2 3 30 30 H 1.08995 * 109.47159 * 29.98099 * 1 2 3 31 31 H 1.09007 * 109.47336 * 149.97762 * 1 2 3 32 32 H 1.08004 * 120.97906 * 0.02562 * 3 2 1 33 33 H 1.08000 * 121.05134 * 180.26475 * 4 3 2 34 34 H 1.08997 * 109.57322 * 105.86244 * 7 6 5 35 35 H 1.08995 * 109.68237 * 345.53828 * 7 6 5 36 36 H 1.08997 * 109.47129 * 175.72894 * 8 7 6 37 37 H 1.08999 * 109.47743 * 55.72200 * 8 7 6 38 38 H 1.08994 * 109.60317 * 289.66875 * 9 8 7 39 39 H 1.08998 * 109.59869 * 169.18811 * 9 8 7 40 40 H 0.97004 * 119.99540 * 0.02562 * 15 13 12 41 41 H 1.09006 * 109.47374 * 300.00265 * 16 15 13 42 42 H 1.09003 * 109.47480 * 59.99846 * 16 15 13 43 43 H 0.97000 * 120.00395 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5856 1.1552 0.0058 5 6 4.1962 -0.0991 0.0000 6 7 5.5833 -0.2011 0.0004 7 6 6.2630 -1.4801 0.2598 8 6 7.4058 -1.2410 1.2524 9 6 8.4524 -0.3211 0.6138 10 6 7.7475 0.8815 0.0287 11 16 8.4659 2.3719 -0.3909 12 6 6.9050 2.9926 -0.9167 13 6 6.6606 4.3372 -1.4614 14 8 7.5809 5.1247 -1.5732 15 7 5.4169 4.6966 -1.8365 16 6 5.1734 6.0357 -2.3783 17 6 3.7122 6.1827 -2.7167 18 1 3.0330 5.3605 -2.5456 19 6 3.2426 7.3665 -3.2445 20 7 1.9675 7.4946 -3.5403 21 14 4.4175 8.7883 -3.5410 22 1 4.9796 8.6882 -4.9119 23 1 3.6861 10.0728 -3.3985 24 1 5.5206 8.7339 -2.5484 25 7 6.0006 2.0668 -0.7512 26 6 6.4145 0.9264 -0.2493 27 7 3.4482 -1.1929 -0.0004 28 7 2.1658 -1.1416 -0.0004 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6768 2.1467 0.0004 33 1 4.1738 2.0610 0.0103 34 1 6.6659 -1.8752 -0.6727 35 1 5.5551 -2.1928 0.6828 36 1 7.8683 -2.1936 1.5103 37 1 7.0118 -0.7724 2.1542 38 1 8.9774 -0.8576 -0.1764 39 1 9.1638 0.0053 1.3724 40 1 4.6829 4.0687 -1.7469 41 1 5.4511 6.7841 -1.6360 42 1 5.7713 6.1777 -3.2786 43 1 1.6371 8.3274 -3.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096037476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:45 Heat of formation + Delta-G solvation = 83.246494 kcal Electronic energy + Delta-G solvation = -29037.316080 eV Core-core repulsion = 25017.232432 eV Total energy + Delta-G solvation = -4020.083649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.116 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.38270 -40.36784 -39.06497 -37.13971 -34.83393 -34.53497 -33.55290 -32.47257 -31.66591 -30.47175 -28.34338 -27.96616 -26.11562 -25.92923 -23.63653 -23.46536 -22.36059 -22.05023 -20.48052 -19.50000 -18.71558 -17.63360 -17.49522 -16.52434 -16.38184 -16.22513 -15.74084 -15.34117 -15.24442 -15.11157 -14.74336 -14.47985 -14.27824 -14.06066 -13.97856 -13.76243 -13.20656 -13.08735 -12.98653 -12.53589 -12.39443 -12.36296 -12.29305 -12.12307 -11.68098 -11.23760 -11.16413 -11.13364 -10.99030 -10.84862 -10.33792 -10.09441 -10.05443 -9.74492 -9.66396 -9.57995 -9.49746 -9.30685 -8.86810 -8.38061 -7.69948 -6.27669 -4.31206 0.06154 0.88734 0.95406 1.01703 1.40874 2.25097 2.30005 3.21608 3.28855 3.34556 3.36653 3.49826 3.62882 4.04752 4.17123 4.26987 4.32244 4.42015 4.46783 4.56356 4.70598 4.74822 4.85675 5.03096 5.07165 5.12021 5.18850 5.21942 5.33540 5.43829 5.48079 5.50017 5.57409 5.65176 5.73700 5.85486 6.06485 6.20386 6.54541 6.62373 6.82003 6.92120 6.94807 7.23542 7.36905 7.95012 8.33646 8.51281 8.72273 8.77711 9.30496 10.84002 Molecular weight = 359.12amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003667 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.574859 B = 7634.637384 C =10894.481033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.030 3.970 3 C -0.085 4.085 4 C -0.143 4.143 5 C 0.328 3.672 6 N -0.519 5.519 7 C 0.128 3.872 8 C -0.134 4.134 9 C -0.033 4.033 10 C -0.308 4.308 11 S 0.279 5.721 12 C 0.022 3.978 13 C 0.579 3.421 14 O -0.540 6.540 15 N -0.670 5.670 16 C 0.219 3.781 17 C -0.547 4.547 18 H 0.081 0.919 19 C 0.080 3.920 20 N -0.889 5.889 21 Si 0.875 3.125 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.260 1.260 25 N -0.453 5.453 26 C 0.311 3.689 27 N -0.295 5.295 28 N -0.217 5.217 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.406 0.594 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -17.970 10.844 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.114 4.114 4 C -0.176 4.176 5 C 0.090 3.910 6 N -0.229 5.229 7 C 0.006 3.994 8 C -0.173 4.173 9 C -0.073 4.073 10 C -0.436 4.436 11 S 0.536 5.464 12 C -0.253 4.253 13 C 0.359 3.641 14 O -0.418 6.418 15 N -0.318 5.318 16 C 0.097 3.903 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.124 4.124 20 N -0.526 5.526 21 Si 0.701 3.299 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.184 1.184 25 N -0.174 5.174 26 C 0.082 3.918 27 N -0.144 5.144 28 N -0.059 5.059 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.091 0.909 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.242 0.758 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.690 -18.396 10.538 23.311 hybrid contribution -0.555 1.340 -0.177 1.462 sum 9.135 -17.056 10.361 21.948 Atomic orbital electron populations 1.20582 0.87535 1.03934 1.03172 1.22689 0.98959 0.90406 0.99869 1.22272 0.93803 1.00047 0.95277 1.22583 0.95640 0.99088 1.00260 1.19809 0.84899 0.92141 0.94119 1.43896 1.00078 1.06851 1.72061 1.21806 0.94895 0.83209 0.99480 1.21961 0.95891 1.00639 0.98827 1.20094 0.96804 0.90612 0.99760 1.25427 0.97535 1.04953 1.15671 1.83754 1.09591 1.00330 1.52765 1.27607 0.92517 0.98803 1.06422 1.16735 0.84740 0.83082 0.79539 1.90839 1.43219 1.50994 1.56745 1.46068 1.07753 1.18096 1.59886 1.19693 0.97891 0.78522 0.94207 1.21023 0.91130 1.01702 1.44577 0.90060 1.24763 0.95176 0.98266 0.94188 1.69869 1.13401 1.26888 1.42402 0.86845 0.81459 0.81825 0.79749 1.19753 1.20787 1.18419 1.66009 1.35159 1.00386 1.15859 1.17625 0.87031 0.87284 0.99816 1.72853 0.99717 1.24512 1.17291 1.72704 0.99707 1.24794 1.08668 0.90384 0.90173 0.90380 0.82775 0.81296 0.90908 0.87765 0.88933 0.90707 0.89670 0.89564 0.75850 0.94959 0.95461 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.88 10.19 36.01 0.37 -0.51 16 2 C 0.03 0.39 6.87 -82.39 -0.57 -0.18 16 3 C -0.09 -1.11 9.86 -39.25 -0.39 -1.49 16 4 C -0.14 -2.08 9.16 -38.99 -0.36 -2.43 16 5 C 0.33 4.81 7.44 -154.71 -1.15 3.65 16 6 N -0.52 -6.70 3.17 -114.89 -0.36 -7.06 16 7 C 0.13 1.19 6.29 -3.56 -0.02 1.17 16 8 C -0.13 -0.90 6.08 -26.46 -0.16 -1.06 16 9 C -0.03 -0.24 6.30 -27.51 -0.17 -0.41 16 10 C -0.31 -3.37 6.24 -34.79 -0.22 -3.59 16 11 S 0.28 3.28 22.98 -107.50 -2.47 0.81 16 12 C 0.02 0.35 7.45 -14.53 -0.11 0.24 16 13 C 0.58 10.99 7.80 -12.65 -0.10 10.89 16 14 O -0.54 -11.47 16.93 5.24 0.09 -11.39 16 15 N -0.67 -13.57 5.54 -62.66 -0.35 -13.91 16 16 C 0.22 5.16 4.50 -5.19 -0.02 5.14 16 17 C -0.55 -14.51 9.83 -34.44 -0.34 -14.85 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 21 Si 0.88 20.65 27.47 -169.99 -4.67 15.98 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 25 N -0.45 -6.87 7.09 -9.64 -0.07 -6.94 16 26 C 0.31 4.18 7.01 -153.69 -1.08 3.11 16 27 N -0.30 -4.48 10.40 31.25 0.33 -4.16 16 28 N -0.22 -3.24 11.42 33.62 0.38 -2.86 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.17 2.53 5.43 -52.49 -0.29 2.25 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.97 7.33 -51.93 -0.38 0.59 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.41 7.72 7.97 -40.82 -0.33 7.39 16 41 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 42 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -32.40 374.99 -10.25 -42.65 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.14 Total: 4.37 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -4.41 Total: 1.78 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.70 Total: -59.85 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.67 Total: 15.98 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.47 Total: 0.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.40 -10.25 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.893 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds