Wall clock time and date at job start Tue Mar 31 2020 05:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38818 * 119.99218 * 2 1 4 4 C 1.38549 * 118.04369 * 179.72938 * 3 2 1 5 5 C 1.39506 * 117.90407 * 0.52206 * 4 3 2 6 6 N 1.39078 * 120.16061 * 179.76285 * 5 4 3 7 7 C 1.47146 * 121.63248 * 167.77747 * 6 5 4 8 8 C 1.53242 * 108.84663 * 225.66919 * 7 6 5 9 9 C 1.53275 * 109.45228 * 295.71962 * 8 7 6 10 10 C 1.51176 * 108.67986 * 49.43219 * 9 8 7 11 11 S 1.70687 * 126.40549 * 161.67333 * 10 9 8 12 12 C 1.76020 * 90.46403 * 180.17496 * 11 10 9 13 13 C 1.47120 * 125.46525 * 179.89232 * 12 11 10 14 14 O 1.21642 * 120.00067 * 359.71874 * 13 12 11 15 15 N 1.34781 * 119.99948 * 179.71764 * 13 12 11 16 16 C 1.46496 * 120.00066 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47357 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99458 * 359.97438 * 17 16 15 19 19 C 1.37866 * 120.00153 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00104 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 120.00276 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47042 * 89.99610 * 21 19 17 23 23 H 1.48498 * 109.47099 * 209.99767 * 21 19 17 24 24 H 1.48497 * 109.46718 * 329.99859 * 21 19 17 25 25 N 1.30477 * 109.06238 * 359.62708 * 12 11 10 26 26 C 1.31293 * 116.50294 * 0.24801 * 25 12 11 27 27 N 1.32511 * 119.67604 * 359.48926 * 5 4 3 28 28 N 1.28341 * 122.07439 * 0.25247 * 27 5 4 29 29 H 1.08995 * 109.47110 * 269.97538 * 1 2 3 30 30 H 1.08995 * 109.47159 * 29.98099 * 1 2 3 31 31 H 1.09007 * 109.47336 * 149.97762 * 1 2 3 32 32 H 1.08004 * 120.97906 * 0.02562 * 3 2 1 33 33 H 1.08000 * 121.05134 * 180.26475 * 4 3 2 34 34 H 1.08997 * 109.57322 * 105.86244 * 7 6 5 35 35 H 1.08995 * 109.68237 * 345.53828 * 7 6 5 36 36 H 1.08997 * 109.47129 * 175.72894 * 8 7 6 37 37 H 1.08999 * 109.47743 * 55.72200 * 8 7 6 38 38 H 1.08994 * 109.60317 * 289.66875 * 9 8 7 39 39 H 1.08998 * 109.59869 * 169.18811 * 9 8 7 40 40 H 0.97004 * 119.99540 * 0.02562 * 15 13 12 41 41 H 1.09006 * 109.47374 * 300.00265 * 16 15 13 42 42 H 1.09003 * 109.47480 * 59.99846 * 16 15 13 43 43 H 0.97000 * 120.00395 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2023 0.0000 4 6 3.5856 1.1552 0.0058 5 6 4.1962 -0.0991 0.0000 6 7 5.5833 -0.2011 0.0004 7 6 6.2630 -1.4801 0.2598 8 6 7.4058 -1.2410 1.2524 9 6 8.4524 -0.3211 0.6138 10 6 7.7475 0.8815 0.0287 11 16 8.4659 2.3719 -0.3909 12 6 6.9050 2.9926 -0.9167 13 6 6.6606 4.3372 -1.4614 14 8 7.5809 5.1247 -1.5732 15 7 5.4169 4.6966 -1.8365 16 6 5.1734 6.0357 -2.3783 17 6 3.7122 6.1827 -2.7167 18 1 3.0330 5.3605 -2.5456 19 6 3.2426 7.3665 -3.2445 20 7 1.9675 7.4946 -3.5403 21 14 4.4175 8.7883 -3.5410 22 1 4.9796 8.6882 -4.9119 23 1 3.6861 10.0728 -3.3985 24 1 5.5206 8.7339 -2.5484 25 7 6.0006 2.0668 -0.7512 26 6 6.4145 0.9264 -0.2493 27 7 3.4482 -1.1929 -0.0004 28 7 2.1658 -1.1416 -0.0004 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6768 2.1467 0.0004 33 1 4.1738 2.0610 0.0103 34 1 6.6659 -1.8752 -0.6727 35 1 5.5551 -2.1928 0.6828 36 1 7.8683 -2.1936 1.5103 37 1 7.0118 -0.7724 2.1542 38 1 8.9774 -0.8576 -0.1764 39 1 9.1638 0.0053 1.3724 40 1 4.6829 4.0687 -1.7469 41 1 5.4511 6.7841 -1.6360 42 1 5.7713 6.1777 -3.2786 43 1 1.6371 8.3274 -3.9121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096037476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:43 Heat of formation + Delta-G solvation = 62.774992 kcal Electronic energy + Delta-G solvation = -29038.203791 eV Core-core repulsion = 25017.232432 eV Total energy + Delta-G solvation = -4020.971359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 359.116 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39000 -41.43761 -40.49934 -38.09512 -36.30616 -35.67112 -34.57003 -34.45616 -32.56982 -31.55717 -29.94763 -28.93782 -27.30263 -26.86018 -24.71580 -24.55014 -23.76378 -23.17852 -21.81243 -20.66435 -19.76653 -19.09466 -18.52687 -18.15654 -17.41596 -17.25887 -16.91691 -16.84362 -16.48326 -16.21050 -16.08444 -15.72994 -15.27231 -15.09652 -14.84575 -14.80519 -14.64565 -14.37908 -14.19147 -14.05700 -13.73843 -13.23889 -13.16481 -13.10760 -12.92225 -12.70630 -12.37401 -12.16251 -11.93220 -11.90941 -11.84173 -11.72310 -11.61458 -11.16193 -10.99334 -10.92652 -10.63923 -10.50968 -10.36529 -10.06696 -8.66742 -8.39665 -6.48034 -0.99991 -0.19651 -0.06589 -0.03119 0.41223 1.16855 1.34509 1.35213 1.37075 1.48887 1.99432 2.19030 2.28810 2.56920 2.86604 2.95628 3.19191 3.48623 3.59027 3.62816 3.67509 3.76783 3.94679 4.01525 4.07775 4.18026 4.40739 4.56879 4.63812 4.64803 4.70294 4.75906 4.78672 4.90942 4.94906 4.97384 5.02846 5.10051 5.18619 5.19646 5.29763 5.32875 5.59137 5.84623 6.01817 6.35430 6.49430 6.63781 6.97832 7.19639 7.71121 8.74972 Molecular weight = 359.12amu Principal moments of inertia in cm(-1) A = 0.008288 B = 0.003667 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3377.574859 B = 7634.637384 C =10894.481033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.028 3.972 3 C -0.087 4.087 4 C -0.162 4.162 5 C 0.319 3.681 6 N -0.521 5.521 7 C 0.119 3.881 8 C -0.124 4.124 9 C -0.038 4.038 10 C -0.277 4.277 11 S 0.350 5.650 12 C -0.034 4.034 13 C 0.586 3.414 14 O -0.567 6.567 15 N -0.679 5.679 16 C 0.231 3.769 17 C -0.550 4.550 18 H 0.056 0.944 19 C 0.029 3.971 20 N -0.930 5.930 21 Si 0.937 3.063 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.253 1.253 25 N -0.461 5.461 26 C 0.279 3.721 27 N -0.311 5.311 28 N -0.239 5.239 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.410 0.590 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.205 -19.260 11.933 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.116 4.116 4 C -0.194 4.194 5 C 0.080 3.920 6 N -0.232 5.232 7 C -0.002 4.002 8 C -0.163 4.163 9 C -0.077 4.077 10 C -0.405 4.405 11 S 0.606 5.394 12 C -0.307 4.307 13 C 0.369 3.631 14 O -0.448 6.448 15 N -0.327 5.327 16 C 0.108 3.892 17 C -0.588 4.588 18 H 0.074 0.926 19 C -0.172 4.172 20 N -0.568 5.568 21 Si 0.760 3.240 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.177 1.177 25 N -0.184 5.184 26 C 0.050 3.950 27 N -0.159 5.159 28 N -0.080 5.080 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.178 0.822 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.245 0.755 41 H 0.045 0.955 42 H 0.040 0.960 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.203 -19.704 11.631 25.931 hybrid contribution -1.268 1.559 -0.438 2.057 sum 10.934 -18.145 11.193 23.960 Atomic orbital electron populations 1.20693 0.85039 1.04708 1.04512 1.23176 1.00558 0.89717 0.98774 1.22540 0.93550 1.00968 0.94537 1.22653 0.96381 0.98999 1.01363 1.19962 0.85952 0.91959 0.94081 1.44153 0.99473 1.07735 1.71856 1.22095 0.95602 0.81800 1.00674 1.21970 0.94740 1.02275 0.97351 1.20461 0.97093 0.89019 1.01150 1.26171 0.96763 1.05780 1.11803 1.83487 1.06390 0.99316 1.50239 1.26789 0.95194 0.97891 1.10798 1.16992 0.83520 0.84281 0.78282 1.90799 1.43694 1.52425 1.57841 1.45885 1.08893 1.17069 1.60833 1.19317 0.95686 0.80348 0.93895 1.21211 0.92371 1.01064 1.44139 0.92618 1.25587 0.96668 1.00964 0.93943 1.69981 1.15232 1.27928 1.43656 0.85860 0.79484 0.78679 0.79940 1.18986 1.19891 1.17733 1.65891 1.36091 1.00965 1.15411 1.17815 0.88223 0.87272 1.01680 1.72791 0.99999 1.24827 1.18293 1.72635 0.99915 1.25878 1.09608 0.88638 0.88959 0.89993 0.81209 0.82180 0.90131 0.88183 0.85275 0.91630 0.87073 0.86791 0.75463 0.95543 0.95961 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 10.19 71.24 0.73 -0.91 16 2 C 0.03 0.72 6.87 42.70 0.29 1.01 16 3 C -0.09 -2.33 9.86 22.48 0.22 -2.11 16 4 C -0.16 -4.87 9.16 22.65 0.21 -4.66 16 5 C 0.32 9.53 7.44 133.09 0.99 10.52 16 6 N -0.52 -13.16 3.17 -517.40 -1.64 -14.80 16 7 C 0.12 1.99 6.29 86.34 0.54 2.54 16 8 C -0.12 -1.21 6.08 30.77 0.19 -1.02 16 9 C -0.04 -0.36 6.30 30.09 0.19 -0.17 16 10 C -0.28 -5.26 6.24 25.37 0.16 -5.10 16 11 S 0.35 7.37 22.98 -56.49 -1.30 6.07 16 12 C -0.03 -1.06 7.45 87.23 0.65 -0.41 16 13 C 0.59 22.68 7.80 86.57 0.68 23.35 16 14 O -0.57 -24.27 16.93 -4.16 -0.07 -24.34 16 15 N -0.68 -28.47 5.54 -470.39 -2.61 -31.08 16 16 C 0.23 11.13 4.50 85.63 0.38 11.52 16 17 C -0.55 -30.14 9.83 25.60 0.25 -29.89 16 18 H 0.06 3.26 7.84 -2.91 -0.02 3.23 16 19 C 0.03 1.61 5.47 84.65 0.46 2.08 16 20 N -0.93 -54.88 13.96 21.44 0.30 -54.58 16 21 Si 0.94 42.78 27.47 68.60 1.88 44.67 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 25 N -0.46 -14.14 7.09 -184.40 -1.31 -15.45 16 26 C 0.28 7.23 7.01 131.55 0.92 8.15 16 27 N -0.31 -9.59 10.40 -55.05 -0.57 -10.16 16 28 N -0.24 -7.25 11.42 -47.56 -0.54 -7.79 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.16 5.09 5.43 -2.91 -0.02 5.07 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.76 7.33 -2.39 -0.02 1.75 16 36 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.41 16.47 7.97 -92.71 -0.74 15.73 16 41 H 0.03 1.31 7.20 -2.38 -0.02 1.29 16 42 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 43 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -72.88 374.99 1.29 -71.59 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.28 Total: 20.98 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 6.86 Total: 14.89 kcal Atomic # 7 Polarization: -127.49 SS G_CDS: -6.37 Total: -133.86 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.07 Total: -24.34 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 7.37 SS G_CDS: -1.30 Total: 6.07 kcal Total: -72.88 1.29 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096037476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.366 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds