Wall clock time and date at job start Tue Mar 31 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47162 * 110.98333 * 2 1 4 4 C 1.52978 * 108.72725 * 54.23038 * 3 2 1 5 5 N 1.46011 * 110.02460 * 50.20406 * 4 3 2 6 6 C 1.37100 * 118.51562 * 161.97437 * 5 4 3 7 7 H 1.07999 * 120.00014 * 204.54086 * 6 5 4 8 8 C 1.38953 * 120.00268 * 24.53744 * 6 5 4 9 9 N 1.31416 * 119.99883 * 17.21720 * 8 6 5 10 10 Si 1.86790 * 120.00042 * 197.21862 * 8 6 5 11 11 H 1.48505 * 109.47377 * 90.00027 * 10 8 6 12 12 H 1.48500 * 109.47353 * 210.00090 * 10 8 6 13 13 H 1.48503 * 109.47501 * 330.00028 * 10 8 6 14 14 C 1.33692 * 122.96742 * 341.95047 * 5 4 3 15 15 O 1.21287 * 118.61290 * 181.71288 * 14 5 4 16 16 C 1.46989 * 111.00700 * 122.87357 * 2 1 3 17 17 C 1.53117 * 109.24818 * 167.02067 * 16 2 1 18 18 C 1.53178 * 109.32019 * 178.98649 * 17 16 2 19 19 N 1.46937 * 108.77629 * 54.73220 * 18 17 16 20 20 C 1.34768 * 120.64405 * 126.36618 * 19 18 17 21 21 O 1.21510 * 120.00737 * 3.83034 * 20 19 18 22 22 C 1.48140 * 119.99849 * 183.82724 * 20 19 18 23 23 C 1.40119 * 121.14237 * 312.93886 * 22 20 19 24 24 C 1.38508 * 117.82076 * 180.26877 * 23 22 20 25 25 N 1.31919 * 119.96752 * 359.72014 * 24 23 22 26 26 N 1.28276 * 122.51710 * 0.02562 * 25 24 23 27 27 C 1.31925 * 122.32749 * 359.97438 * 26 25 24 28 28 C 1.46930 * 118.70117 * 306.64187 * 19 18 17 29 29 C 1.52746 * 109.02132 * 53.30247 * 28 19 18 30 30 H 1.09000 * 109.46915 * 297.12787 * 1 2 3 31 31 H 1.08996 * 109.47527 * 57.12959 * 1 2 3 32 32 H 1.09006 * 109.46781 * 177.13252 * 1 2 3 33 33 H 1.09003 * 109.59990 * 294.45148 * 3 2 1 34 34 H 1.08998 * 109.58409 * 173.99996 * 3 2 1 35 35 H 1.09008 * 109.37948 * 290.03604 * 4 3 2 36 36 H 1.09004 * 109.38047 * 170.37770 * 4 3 2 37 37 H 0.96997 * 119.99779 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.49285 * 59.03454 * 17 16 2 39 39 H 1.08994 * 109.49633 * 298.94121 * 17 16 2 40 40 H 1.09004 * 109.58387 * 294.94847 * 18 17 16 41 41 H 1.08995 * 109.58580 * 174.52127 * 18 17 16 42 42 H 1.07993 * 121.08901 * 0.02562 * 23 22 20 43 43 H 1.07994 * 120.01519 * 179.70612 * 24 23 22 44 44 H 1.07999 * 120.17416 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.58258 * 173.13789 * 28 19 18 46 46 H 1.08998 * 109.58676 * 293.56146 * 28 19 18 47 47 H 1.08997 * 109.56656 * 185.47006 * 29 28 19 48 48 H 1.09002 * 109.38556 * 65.43458 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3740 0.0000 4 6 1.3811 2.1359 1.1755 5 7 1.5271 1.3612 2.4045 6 6 1.3888 2.0074 3.6058 7 1 1.8586 1.6065 4.4918 8 6 0.6443 3.1780 3.6834 9 7 -0.1945 3.4883 2.7205 10 14 0.8356 4.3106 5.1564 11 1 1.9056 5.3031 4.8821 12 1 -0.4453 5.0196 5.4054 13 1 1.1985 3.5095 6.3531 14 6 1.7889 0.0502 2.4114 15 8 1.8631 -0.5217 3.4784 16 6 1.9959 -0.7448 1.1525 17 6 3.4919 -0.9992 0.9479 18 6 4.0481 -1.7532 2.1597 19 7 3.2531 -2.9719 2.3641 20 6 3.8511 -4.1771 2.4419 21 8 5.0633 -4.2571 2.4128 22 6 3.0307 -5.4046 2.5631 23 6 1.9752 -5.4830 3.4813 24 6 1.2568 -6.6657 3.5409 25 7 1.5720 -7.6691 2.7446 26 7 2.5338 -7.6019 1.8985 27 6 3.2794 -6.5221 1.7621 28 6 1.7930 -2.8515 2.4758 29 6 1.2628 -2.0842 1.2661 30 1 -0.3633 0.4686 0.9146 31 1 -0.3634 0.5577 -0.8631 32 1 -0.3633 -1.0264 -0.0514 33 1 1.7300 1.8676 -0.9348 34 1 3.0804 1.3494 0.1073 35 1 0.3227 2.3088 0.9805 36 1 1.8874 3.0944 1.2898 37 1 -0.7139 4.3057 2.7745 38 1 4.0116 -0.0469 0.8420 39 1 3.6396 -1.5968 0.0484 40 1 3.9820 -1.1210 3.0452 41 1 5.0885 -2.0219 1.9768 42 1 1.7323 -4.6500 4.1242 43 1 0.4391 -6.7665 4.2391 44 1 4.0804 -6.5034 1.0379 45 1 1.3454 -3.8450 2.5013 46 1 1.5397 -2.3108 3.3876 47 1 0.1945 -1.9050 1.3871 48 1 1.4334 -2.6700 0.3629 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096050092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:29 Heat of formation + Delta-G solvation = 47.482013 kcal Electronic energy + Delta-G solvation = -34362.054339 eV Core-core repulsion = 30033.500050 eV Total energy + Delta-G solvation = -4328.554289 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56193 -40.86486 -39.33866 -36.84862 -36.46250 -34.65924 -33.74442 -32.75518 -31.93288 -31.33731 -30.83806 -28.61513 -26.94803 -25.49602 -25.45394 -24.87217 -23.67799 -22.73185 -21.71850 -21.62319 -20.01053 -18.24331 -17.85084 -17.26083 -17.02963 -16.98172 -16.33565 -16.06094 -15.34148 -15.25131 -15.13688 -14.89320 -14.77544 -14.68543 -14.58001 -14.02126 -13.78565 -13.52806 -13.42208 -13.02336 -12.68810 -12.49183 -12.27087 -12.25175 -11.85944 -11.75281 -11.51139 -11.40126 -11.22493 -11.13799 -10.97677 -10.85959 -10.69781 -10.55130 -10.48265 -10.41174 -10.32197 -10.28500 -10.12541 -9.68922 -9.23466 -8.99935 -8.44853 -7.83351 -7.59641 -6.45782 -4.10030 0.21478 0.61934 2.50258 2.87032 3.02918 3.14413 3.18422 3.32559 3.63312 3.85497 3.89080 4.07440 4.14859 4.22118 4.31852 4.58497 4.63391 4.76125 4.87143 5.03545 5.11151 5.20641 5.23584 5.29469 5.41797 5.53057 5.56590 5.60679 5.65617 5.69318 5.78019 5.82385 5.84912 5.89393 5.97590 6.03356 6.09154 6.13604 6.28160 6.30997 6.47027 6.52875 6.59111 7.02713 7.21396 7.28256 7.38565 7.41575 7.99520 7.99969 8.26810 8.40037 9.00566 9.26101 9.75333 10.51523 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003115 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.061088 B = 8987.445048 C = 9430.992476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.526 5.526 3 C 0.024 3.976 4 C 0.093 3.907 5 N -0.426 5.426 6 C -0.315 4.315 7 H 0.101 0.899 8 C 0.036 3.964 9 N -0.876 5.876 10 Si 0.924 3.076 11 H -0.277 1.277 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.426 3.574 15 O -0.585 6.585 16 C 0.104 3.896 17 C -0.109 4.109 18 C 0.114 3.886 19 N -0.578 5.578 20 C 0.557 3.443 21 O -0.536 6.536 22 C -0.115 4.115 23 C -0.087 4.087 24 C 0.039 3.961 25 N -0.234 5.234 26 N -0.243 5.243 27 C 0.085 3.915 28 C 0.078 3.922 29 C -0.108 4.108 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.269 0.731 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.163 0.837 43 H 0.180 0.820 44 H 0.179 0.821 45 H 0.072 0.928 46 H 0.131 0.869 47 H 0.080 0.920 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -8.808 -4.716 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.249 5.249 3 C -0.104 4.104 4 C -0.032 4.032 5 N -0.143 5.143 6 C -0.442 4.442 7 H 0.118 0.882 8 C -0.168 4.168 9 N -0.514 5.514 10 Si 0.751 3.249 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.213 3.787 15 O -0.471 6.471 16 C 0.011 3.989 17 C -0.148 4.148 18 C -0.008 4.008 19 N -0.308 5.308 20 C 0.343 3.657 21 O -0.414 6.414 22 C -0.130 4.130 23 C -0.116 4.116 24 C -0.125 4.125 25 N -0.077 5.077 26 N -0.085 5.085 27 C -0.079 4.079 28 C -0.044 4.044 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.180 0.820 43 H 0.197 0.803 44 H 0.196 0.804 45 H 0.090 0.910 46 H 0.148 0.852 47 H 0.098 0.902 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.548 -10.697 -5.220 12.003 hybrid contribution -0.187 2.932 1.685 3.387 sum 1.361 -7.765 -3.535 8.640 Atomic orbital electron populations 1.22521 0.87436 1.01720 1.01967 1.62748 1.08399 1.13818 1.39972 1.22798 1.00041 0.88473 0.99093 1.22016 1.03415 0.94444 0.83305 1.43218 1.59206 1.05439 1.06439 1.19674 1.30726 1.05579 0.88269 0.88170 1.25339 0.94199 0.98728 0.98572 1.69936 1.22453 1.25161 1.33893 0.85951 0.77681 0.79914 0.81357 1.20306 1.20933 1.19323 1.20136 0.85147 0.82794 0.90659 1.90314 1.57668 1.67281 1.31876 1.21128 0.95715 0.93847 0.88193 1.21851 0.93649 1.00934 0.98337 1.21751 0.95106 0.84763 0.99165 1.47894 1.08412 1.05675 1.68830 1.17943 0.87174 0.82700 0.77886 1.90793 1.13152 1.86296 1.51138 1.21250 0.96719 0.96836 0.98176 1.22849 0.92377 0.99669 0.96734 1.24355 0.99972 0.89912 0.98250 1.72875 1.08449 1.25705 1.00646 1.73096 1.00918 1.21948 1.12491 1.24438 0.98062 0.88469 0.96960 1.22717 0.78404 1.00492 1.02760 1.21765 1.00157 0.94370 0.98375 0.93371 0.91505 0.91607 0.89660 0.90826 0.88713 0.91661 0.92094 0.90380 0.90550 0.89221 0.89206 0.81975 0.80314 0.80434 0.90976 0.85207 0.90187 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.07 60.06 0.48 0.66 16 2 N -0.53 -8.17 4.89 -228.31 -1.12 -9.28 16 3 C 0.02 0.38 5.96 -3.69 -0.02 0.36 16 4 C 0.09 1.86 4.03 -4.32 -0.02 1.84 16 5 N -0.43 -9.67 2.77 -115.63 -0.32 -9.99 16 6 C -0.31 -8.01 9.04 -14.93 -0.14 -8.14 16 7 H 0.10 2.71 7.32 -52.49 -0.38 2.32 16 8 C 0.04 0.88 5.04 -17.46 -0.09 0.79 16 9 N -0.88 -21.58 10.81 55.50 0.60 -20.98 16 10 Si 0.92 19.51 29.59 -169.99 -5.03 14.48 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 14 C 0.43 8.85 5.27 -11.65 -0.06 8.79 16 15 O -0.59 -13.32 10.97 5.55 0.06 -13.26 16 16 C 0.10 1.71 0.44 -132.77 -0.06 1.65 16 17 C -0.11 -1.62 4.91 -26.58 -0.13 -1.75 16 18 C 0.11 1.78 5.91 -3.71 -0.02 1.76 16 19 N -0.58 -8.46 2.98 -174.05 -0.52 -8.98 16 20 C 0.56 8.14 7.34 -12.20 -0.09 8.05 16 21 O -0.54 -9.28 16.47 5.36 0.09 -9.19 16 22 C -0.12 -1.41 5.14 -104.57 -0.54 -1.95 16 23 C -0.09 -0.88 7.55 -38.78 -0.29 -1.17 16 24 C 0.04 0.37 11.30 -17.41 -0.20 0.17 16 25 N -0.23 -2.90 11.48 30.53 0.35 -2.55 16 26 N -0.24 -3.18 11.49 30.78 0.35 -2.82 16 27 C 0.09 1.01 11.06 -16.96 -0.19 0.83 16 28 C 0.08 1.09 4.78 -3.94 -0.02 1.07 16 29 C -0.11 -1.56 4.20 -26.81 -0.11 -1.67 16 30 H 0.05 0.90 5.94 -51.93 -0.31 0.59 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.12 6.19 -51.93 -0.32 0.80 16 35 H 0.10 2.06 5.53 -51.92 -0.29 1.78 16 36 H 0.06 1.38 7.83 -51.93 -0.41 0.98 16 37 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 38 H 0.08 1.16 6.40 -51.93 -0.33 0.82 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.62 6.47 -51.93 -0.34 1.29 16 41 H 0.09 1.36 7.03 -51.93 -0.36 0.99 16 42 H 0.16 1.44 6.86 -52.49 -0.36 1.08 16 43 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.07 0.83 4.35 -51.93 -0.23 0.60 16 46 H 0.13 2.18 5.22 -51.93 -0.27 1.91 16 47 H 0.08 1.16 6.24 -51.93 -0.32 0.84 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -29.66 361.35 -7.49 -37.15 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.91 Total: 8.70 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.49 Total: 11.29 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.65 Total: -54.61 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.15 Total: -22.45 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.66 -7.49 -37.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.627 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds