Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47162 * 110.98333 * 2 1 4 4 C 1.52978 * 108.72725 * 54.23038 * 3 2 1 5 5 N 1.46011 * 110.02460 * 50.20406 * 4 3 2 6 6 C 1.37100 * 118.51562 * 161.97437 * 5 4 3 7 7 H 1.07999 * 120.00014 * 204.54086 * 6 5 4 8 8 C 1.38953 * 120.00268 * 24.53744 * 6 5 4 9 9 N 1.31416 * 119.99883 * 17.21720 * 8 6 5 10 10 Si 1.86790 * 120.00042 * 197.21862 * 8 6 5 11 11 H 1.48505 * 109.47377 * 90.00027 * 10 8 6 12 12 H 1.48500 * 109.47353 * 210.00090 * 10 8 6 13 13 H 1.48503 * 109.47501 * 330.00028 * 10 8 6 14 14 C 1.33692 * 122.96742 * 341.95047 * 5 4 3 15 15 O 1.21287 * 118.61290 * 181.71288 * 14 5 4 16 16 C 1.46989 * 111.00700 * 122.87357 * 2 1 3 17 17 C 1.53117 * 109.24818 * 167.02067 * 16 2 1 18 18 C 1.53178 * 109.32019 * 178.98649 * 17 16 2 19 19 N 1.46937 * 108.77629 * 54.73220 * 18 17 16 20 20 C 1.34768 * 120.64405 * 126.36618 * 19 18 17 21 21 O 1.21510 * 120.00737 * 3.83034 * 20 19 18 22 22 C 1.48140 * 119.99849 * 183.82724 * 20 19 18 23 23 C 1.40119 * 121.14237 * 312.93886 * 22 20 19 24 24 C 1.38508 * 117.82076 * 180.26877 * 23 22 20 25 25 N 1.31919 * 119.96752 * 359.72014 * 24 23 22 26 26 N 1.28276 * 122.51710 * 0.02562 * 25 24 23 27 27 C 1.31925 * 122.32749 * 359.97438 * 26 25 24 28 28 C 1.46930 * 118.70117 * 306.64187 * 19 18 17 29 29 C 1.52746 * 109.02132 * 53.30247 * 28 19 18 30 30 H 1.09000 * 109.46915 * 297.12787 * 1 2 3 31 31 H 1.08996 * 109.47527 * 57.12959 * 1 2 3 32 32 H 1.09006 * 109.46781 * 177.13252 * 1 2 3 33 33 H 1.09003 * 109.59990 * 294.45148 * 3 2 1 34 34 H 1.08998 * 109.58409 * 173.99996 * 3 2 1 35 35 H 1.09008 * 109.37948 * 290.03604 * 4 3 2 36 36 H 1.09004 * 109.38047 * 170.37770 * 4 3 2 37 37 H 0.96997 * 119.99779 * 180.02562 * 9 8 6 38 38 H 1.09004 * 109.49285 * 59.03454 * 17 16 2 39 39 H 1.08994 * 109.49633 * 298.94121 * 17 16 2 40 40 H 1.09004 * 109.58387 * 294.94847 * 18 17 16 41 41 H 1.08995 * 109.58580 * 174.52127 * 18 17 16 42 42 H 1.07993 * 121.08901 * 0.02562 * 23 22 20 43 43 H 1.07994 * 120.01519 * 179.70612 * 24 23 22 44 44 H 1.07999 * 120.17416 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.58258 * 173.13789 * 28 19 18 46 46 H 1.08998 * 109.58676 * 293.56146 * 28 19 18 47 47 H 1.08997 * 109.56656 * 185.47006 * 29 28 19 48 48 H 1.09002 * 109.38556 * 65.43458 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3740 0.0000 4 6 1.3811 2.1359 1.1755 5 7 1.5271 1.3612 2.4045 6 6 1.3888 2.0074 3.6058 7 1 1.8586 1.6065 4.4918 8 6 0.6443 3.1780 3.6834 9 7 -0.1945 3.4883 2.7205 10 14 0.8356 4.3106 5.1564 11 1 1.9056 5.3031 4.8821 12 1 -0.4453 5.0196 5.4054 13 1 1.1985 3.5095 6.3531 14 6 1.7889 0.0502 2.4114 15 8 1.8631 -0.5217 3.4784 16 6 1.9959 -0.7448 1.1525 17 6 3.4919 -0.9992 0.9479 18 6 4.0481 -1.7532 2.1597 19 7 3.2531 -2.9719 2.3641 20 6 3.8511 -4.1771 2.4419 21 8 5.0633 -4.2571 2.4128 22 6 3.0307 -5.4046 2.5631 23 6 1.9752 -5.4830 3.4813 24 6 1.2568 -6.6657 3.5409 25 7 1.5720 -7.6691 2.7446 26 7 2.5338 -7.6019 1.8985 27 6 3.2794 -6.5221 1.7621 28 6 1.7930 -2.8515 2.4758 29 6 1.2628 -2.0842 1.2661 30 1 -0.3633 0.4686 0.9146 31 1 -0.3634 0.5577 -0.8631 32 1 -0.3633 -1.0264 -0.0514 33 1 1.7300 1.8676 -0.9348 34 1 3.0804 1.3494 0.1073 35 1 0.3227 2.3088 0.9805 36 1 1.8874 3.0944 1.2898 37 1 -0.7139 4.3057 2.7745 38 1 4.0116 -0.0469 0.8420 39 1 3.6396 -1.5968 0.0484 40 1 3.9820 -1.1210 3.0452 41 1 5.0885 -2.0219 1.9768 42 1 1.7323 -4.6500 4.1242 43 1 0.4391 -6.7665 4.2391 44 1 4.0804 -6.5034 1.0379 45 1 1.3454 -3.8450 2.5013 46 1 1.5397 -2.3108 3.3876 47 1 0.1945 -1.9050 1.3871 48 1 1.4334 -2.6700 0.3629 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096050092.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = 26.296441 kcal Electronic energy + Delta-G solvation = -34362.973015 eV Core-core repulsion = 30033.500050 eV Total energy + Delta-G solvation = -4329.472965 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.67598 -42.08625 -40.55631 -38.24518 -37.99857 -36.17971 -34.78247 -33.62671 -33.59745 -32.58104 -32.21059 -30.02342 -28.21328 -27.16958 -26.57715 -25.77915 -24.98296 -23.91792 -23.15871 -23.02203 -21.17876 -19.65741 -18.99027 -18.56079 -18.37535 -18.07050 -17.62635 -17.28488 -16.81313 -16.68620 -16.40514 -16.20810 -15.98380 -15.88242 -15.72992 -15.59401 -14.88320 -14.81340 -14.57700 -14.41481 -13.98151 -13.88656 -13.59839 -13.50793 -13.47340 -13.19777 -12.98186 -12.73903 -12.66968 -12.38852 -12.27410 -12.23892 -12.09322 -12.07120 -11.90637 -11.64491 -11.52590 -11.21829 -11.16445 -11.03439 -10.74025 -10.42315 -9.73767 -9.62689 -9.11210 -8.28388 -6.02578 -0.70633 -0.20519 1.32750 1.38218 1.39120 1.48757 1.73485 2.00531 2.22088 2.43282 2.69629 2.99873 3.04105 3.07112 3.14079 3.36056 3.49615 3.55818 3.70379 3.79148 3.84070 4.02588 4.17843 4.25681 4.27408 4.34408 4.38422 4.42071 4.47914 4.54523 4.61419 4.65505 4.72407 4.74053 4.77491 4.83031 4.85654 4.98058 5.06236 5.07333 5.09841 5.21490 5.36754 5.40814 5.48348 5.86378 5.96472 6.13459 6.23075 6.46119 6.83227 7.16435 7.52602 7.53219 8.03112 8.63997 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.003115 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.061088 B = 8987.445048 C = 9430.992476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.511 5.511 3 C 0.032 3.968 4 C 0.103 3.897 5 N -0.446 5.446 6 C -0.344 4.344 7 H 0.072 0.928 8 C 0.004 3.996 9 N -0.890 5.890 10 Si 0.980 3.020 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.424 3.576 15 O -0.609 6.609 16 C 0.109 3.891 17 C -0.101 4.101 18 C 0.119 3.881 19 N -0.578 5.578 20 C 0.562 3.438 21 O -0.566 6.566 22 C -0.127 4.127 23 C -0.078 4.078 24 C 0.052 3.948 25 N -0.256 5.256 26 N -0.264 5.264 27 C 0.087 3.913 28 C 0.086 3.914 29 C -0.106 4.106 30 H 0.008 0.992 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.271 0.729 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.176 0.824 43 H 0.219 0.781 44 H 0.190 0.810 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -9.888 -5.974 11.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.234 5.234 3 C -0.096 4.096 4 C -0.022 4.022 5 N -0.164 5.164 6 C -0.472 4.472 7 H 0.090 0.910 8 C -0.199 4.199 9 N -0.528 5.528 10 Si 0.805 3.195 11 H -0.195 1.195 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.212 3.788 15 O -0.496 6.496 16 C 0.015 3.985 17 C -0.140 4.140 18 C -0.004 4.004 19 N -0.307 5.307 20 C 0.350 3.650 21 O -0.446 6.446 22 C -0.141 4.141 23 C -0.108 4.108 24 C -0.112 4.112 25 N -0.097 5.097 26 N -0.104 5.104 27 C -0.078 4.078 28 C -0.036 4.036 29 C -0.145 4.145 30 H 0.027 0.973 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.193 0.807 43 H 0.235 0.765 44 H 0.207 0.793 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.947 -11.795 -6.504 13.503 hybrid contribution -0.031 3.214 2.162 3.873 sum 0.916 -8.581 -4.342 9.661 Atomic orbital electron populations 1.22541 0.86960 1.02946 1.00777 1.62855 1.08640 1.13305 1.38611 1.22829 1.00263 0.88253 0.98270 1.21912 1.02290 0.94146 0.83864 1.43434 1.60138 1.06405 1.06395 1.19549 1.31755 1.06970 0.88907 0.91012 1.25949 0.93715 0.99350 1.00858 1.70021 1.22566 1.25404 1.34856 0.85126 0.77889 0.78177 0.78354 1.19475 1.20212 1.20142 1.21097 0.83067 0.82436 0.92155 1.90325 1.57922 1.67815 1.33547 1.21182 0.97178 0.94096 0.85998 1.21816 0.92300 1.01236 0.98649 1.21574 0.95743 0.84936 0.98177 1.47900 1.08589 1.05516 1.68742 1.18202 0.86926 0.83117 0.76794 1.90776 1.14616 1.86761 1.52449 1.21071 0.97509 0.95884 0.99660 1.23058 0.91403 1.00412 0.95899 1.24905 1.00118 0.88572 0.97588 1.72814 1.08677 1.26982 1.01267 1.73073 1.01573 1.22435 1.13348 1.24584 0.98132 0.88016 0.97083 1.22579 0.78093 1.01684 1.01268 1.21810 0.99852 0.93355 0.99477 0.97337 0.89594 0.89534 0.86753 0.89968 0.90710 0.93748 0.91887 0.90351 0.88386 0.92453 0.88791 0.80655 0.76490 0.79345 0.88021 0.88116 0.90195 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.07 127.69 1.03 1.48 16 2 N -0.51 -14.74 4.89 -876.23 -4.28 -19.02 16 3 C 0.03 0.97 5.96 86.25 0.51 1.48 16 4 C 0.10 4.16 4.03 86.46 0.35 4.51 16 5 N -0.45 -20.88 2.77 -638.72 -1.77 -22.65 16 6 C -0.34 -18.26 9.04 84.04 0.76 -17.50 16 7 H 0.07 4.12 7.32 -2.91 -0.02 4.10 16 8 C 0.00 0.19 5.04 84.93 0.43 0.62 16 9 N -0.89 -44.78 10.81 21.66 0.23 -44.54 16 10 Si 0.98 40.85 29.59 68.60 2.03 42.88 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.42 17.96 5.27 87.71 0.46 18.42 16 15 O -0.61 -28.71 10.97 -3.05 -0.03 -28.75 16 16 C 0.11 3.41 0.44 2.72 0.00 3.42 16 17 C -0.10 -2.86 4.91 30.69 0.15 -2.71 16 18 C 0.12 3.66 5.91 86.36 0.51 4.17 16 19 N -0.58 -16.31 2.98 -822.86 -2.45 -18.76 16 20 C 0.56 15.73 7.34 86.87 0.64 16.37 16 21 O -0.57 -19.25 16.47 -3.75 -0.06 -19.31 16 22 C -0.13 -2.86 5.14 -19.83 -0.10 -2.96 16 23 C -0.08 -1.38 7.55 22.79 0.17 -1.21 16 24 C 0.05 0.84 11.30 84.74 0.96 1.79 16 25 N -0.26 -5.76 11.48 -57.33 -0.66 -6.42 16 26 N -0.26 -6.45 11.49 -56.54 -0.65 -7.10 16 27 C 0.09 1.92 11.06 85.04 0.94 2.86 16 28 C 0.09 2.26 4.78 86.21 0.41 2.67 16 29 C -0.11 -2.83 4.20 30.55 0.13 -2.70 16 30 H 0.01 0.30 5.94 -2.39 -0.01 0.28 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 2.09 6.16 -2.38 -0.01 2.07 16 33 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.08 2.36 6.19 -2.39 -0.01 2.34 16 35 H 0.07 3.32 5.53 -2.38 -0.01 3.31 16 36 H 0.04 1.93 7.83 -2.38 -0.02 1.91 16 37 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 38 H 0.08 2.21 6.40 -2.39 -0.02 2.20 16 39 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.06 2.15 6.47 -2.39 -0.02 2.13 16 41 H 0.09 2.81 7.03 -2.39 -0.02 2.80 16 42 H 0.18 2.66 6.86 -2.91 -0.02 2.64 16 43 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.19 3.58 8.06 -2.91 -0.02 3.56 16 45 H 0.10 2.07 4.35 -2.39 -0.01 2.05 16 46 H 0.10 3.37 5.22 -2.40 -0.01 3.36 16 47 H 0.08 2.15 6.24 -2.39 -0.01 2.14 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -67.23 361.35 0.73 -66.50 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 1.02 Total: 26.46 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 7.35 Total: 30.71 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -9.58 Total: -118.49 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.10 Total: -48.06 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -67.23 0.73 -66.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096050092.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.793 kcal (2) G-P(sol) polarization free energy of solvation -67.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds