Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.50706 * 109.46958 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99955 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00093 * 179.97438 * 4 3 2 7 7 C 1.46490 * 120.00126 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.42994 * 324.88812 * 7 6 4 9 9 C 1.53078 * 109.42679 * 205.00021 * 7 6 4 10 10 C 1.53294 * 108.32670 * 192.14522 * 9 7 6 11 11 C 1.52902 * 109.52047 * 184.48678 * 10 9 7 12 12 C 1.53211 * 109.35347 * 181.35936 * 11 10 9 13 13 N 1.46928 * 108.77497 * 305.55601 * 12 11 10 14 14 C 1.36942 * 120.62325 * 233.37074 * 13 12 11 15 15 H 1.07994 * 119.99541 * 151.87170 * 14 13 12 16 16 C 1.38805 * 120.00056 * 331.87732 * 14 13 12 17 17 N 1.31623 * 120.00447 * 343.10495 * 16 14 13 18 18 Si 1.86801 * 120.00142 * 163.10834 * 16 14 13 19 19 H 1.48504 * 109.47151 * 89.99522 * 18 16 14 20 20 H 1.48499 * 109.47178 * 209.99859 * 18 16 14 21 21 H 1.48507 * 109.46748 * 329.99921 * 18 16 14 22 22 C 1.46931 * 118.75255 * 53.65478 * 13 12 11 23 23 C 1.52925 * 109.49513 * 304.88327 * 10 9 7 24 24 O 1.42729 * 108.53128 * 64.63455 * 10 9 7 25 25 C 1.35893 * 117.72298 * 310.56268 * 24 10 9 26 26 C 1.39141 * 118.49281 * 197.25605 * 25 24 10 27 27 C 1.37976 * 120.20406 * 180.28904 * 26 25 24 28 28 C 1.38294 * 119.94921 * 0.02562 * 27 26 25 29 29 C 1.38101 * 119.99181 * 359.94077 * 28 27 26 30 30 C 1.38363 * 121.77800 * 17.47776 * 25 24 10 31 31 H 1.08995 * 109.47373 * 299.99951 * 1 2 3 32 32 H 1.09005 * 109.47358 * 60.00230 * 1 2 3 33 33 H 1.09007 * 109.47128 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47067 * 59.99841 * 3 2 1 35 35 H 1.08994 * 109.47409 * 299.99535 * 3 2 1 36 36 H 0.97004 * 119.99655 * 0.02562 * 6 4 3 37 37 H 1.09003 * 109.69177 * 72.44257 * 9 7 6 38 38 H 1.08996 * 109.69048 * 311.86008 * 9 7 6 39 39 H 1.09000 * 109.48680 * 61.39594 * 11 10 9 40 40 H 1.09000 * 109.51508 * 301.33753 * 11 10 9 41 41 H 1.09004 * 109.58611 * 185.77232 * 12 11 10 42 42 H 1.08993 * 109.70486 * 65.41759 * 12 11 10 43 43 H 0.96998 * 120.00495 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.59265 * 66.07175 * 22 13 12 45 45 H 1.08998 * 109.59061 * 186.51326 * 22 13 12 46 46 H 1.08998 * 109.50142 * 298.53481 * 23 10 9 47 47 H 1.09003 * 109.49761 * 58.62606 * 23 10 9 48 48 H 1.08000 * 119.90198 * 0.25626 * 26 25 24 49 49 H 1.07993 * 120.02718 * 180.02562 * 27 26 25 50 50 H 1.07993 * 120.00292 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.83805 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7367 2.1812 0.0003 8 1 6.0319 1.3145 0.5919 9 6 6.3476 3.4456 0.6099 10 6 7.8537 3.4391 0.3246 11 6 8.5101 4.6337 1.0174 12 6 10.0094 4.6427 0.7019 13 7 10.5783 3.3394 1.0716 14 6 11.6634 3.2626 1.9034 15 1 11.8066 2.3912 2.5249 16 6 12.5791 4.3048 1.9476 17 7 12.6059 5.1989 0.9819 18 14 13.7737 4.4386 3.3775 19 1 15.0157 3.6905 3.0566 20 1 14.1034 5.8669 3.6150 21 1 13.1513 3.8647 4.5976 22 6 9.9648 2.1204 0.5271 23 6 8.4663 2.1385 0.8459 24 8 8.0485 3.5316 -1.0863 25 6 7.3443 2.6815 -1.8788 26 6 7.7674 2.4932 -3.1909 27 6 7.0751 1.6427 -4.0282 28 6 5.9568 0.9751 -3.5631 29 6 5.5347 1.1592 -2.2612 30 6 6.2264 2.0108 -1.4155 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8592 3.1726 -0.0001 37 1 6.1778 3.4531 1.6866 38 1 5.8921 4.3274 0.1595 39 1 8.3656 4.5536 2.0948 40 1 8.0572 5.5574 0.6574 41 1 10.4986 5.4306 1.2747 42 1 10.1597 4.8182 -0.3632 43 1 13.2461 5.9270 1.0126 44 1 10.1084 2.0901 -0.5530 45 1 10.4251 1.2443 0.9838 46 1 8.3231 2.0755 1.9246 47 1 7.9817 1.2893 0.3640 48 1 8.6401 3.0149 -3.5554 49 1 7.4062 1.4984 -5.0459 50 1 5.4141 0.3095 -4.2178 51 1 4.6613 0.6363 -1.9004 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096053081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -58.400674 kcal Electronic energy + Delta-G solvation = -33892.829373 eV Core-core repulsion = 29565.505347 eV Total energy + Delta-G solvation = -4327.324026 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.30154 -39.81568 -38.08881 -37.75600 -35.89888 -35.60192 -33.12430 -31.84670 -30.90200 -30.15604 -29.67669 -29.13089 -27.99068 -26.30968 -24.79142 -23.71286 -22.75624 -22.28362 -21.99871 -20.86081 -20.15093 -18.96244 -17.72257 -17.38434 -17.15105 -16.83515 -16.53450 -15.88379 -15.57196 -15.47592 -14.96633 -14.82273 -14.72529 -14.63550 -14.14974 -13.99049 -13.54410 -13.38893 -13.30558 -13.20304 -13.01694 -12.90957 -12.65366 -12.37276 -12.10104 -11.88030 -11.56767 -11.45929 -11.38180 -11.33834 -11.14568 -10.98913 -10.69546 -10.56008 -10.37467 -10.23478 -10.21933 -10.01342 -9.85679 -9.53691 -9.44924 -9.31845 -8.69966 -8.44732 -7.91873 -6.63675 -5.76714 -3.19102 1.39679 1.61789 2.33733 2.53377 3.38227 3.45320 3.47507 3.52667 3.69448 3.96731 4.35098 4.51063 4.59618 4.62547 4.67319 4.74801 4.84107 4.89757 4.94529 5.06238 5.09552 5.20040 5.25637 5.33487 5.39150 5.42538 5.49437 5.59542 5.64194 5.69803 5.80019 5.88486 6.03324 6.11194 6.18399 6.22097 6.30325 6.44530 6.47685 6.48746 6.55102 6.59775 6.64772 6.67926 6.76883 6.97628 7.02767 7.21812 7.37206 7.70412 7.80903 7.84711 7.96288 8.47076 9.23683 9.86862 10.44774 11.31743 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002660 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.173308 B =10524.674454 C =11581.885875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.512 6.512 6 N -0.719 5.719 7 C 0.195 3.805 8 H 0.103 0.897 9 C -0.155 4.155 10 C 0.137 3.863 11 C -0.126 4.126 12 C 0.175 3.825 13 N -0.591 5.591 14 C -0.252 4.252 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.151 3.849 23 C -0.158 4.158 24 O -0.292 6.292 25 C 0.158 3.842 26 C -0.157 4.157 27 C -0.082 4.082 28 C -0.168 4.168 29 C -0.072 4.072 30 C -0.184 4.184 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.028 0.972 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.131 0.869 49 H 0.124 0.876 50 H 0.117 0.883 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.970 -3.209 -5.006 24.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.386 6.386 6 N -0.372 5.372 7 C 0.091 3.909 8 H 0.121 0.879 9 C -0.194 4.194 10 C 0.099 3.901 11 C -0.165 4.165 12 C 0.049 3.951 13 N -0.313 5.313 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.730 3.270 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.024 3.976 23 C -0.197 4.197 24 O -0.205 6.205 25 C 0.111 3.889 26 C -0.175 4.175 27 C -0.100 4.100 28 C -0.187 4.187 29 C -0.090 4.090 30 C -0.186 4.186 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.148 0.852 49 H 0.142 0.858 50 H 0.135 0.865 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.223 -3.906 -5.034 24.081 hybrid contribution -0.001 0.676 0.711 0.981 sum -23.224 -3.230 -4.324 23.843 Atomic orbital electron populations 1.22849 0.80300 1.03414 1.00130 1.88030 1.19830 1.25046 1.95422 1.22251 0.91622 0.87165 1.02727 1.20264 0.88657 0.84801 0.76561 1.90766 1.74393 1.26319 1.47124 1.45976 1.06571 1.08738 1.75870 1.19729 0.78326 0.99900 0.92904 0.87882 1.22590 0.97277 0.96991 1.02494 1.21723 0.91660 0.98573 0.78136 1.22251 1.01201 0.94067 0.99031 1.20713 0.86451 0.89292 0.98646 1.44060 1.32742 0.99854 1.54671 1.19167 0.99753 1.04671 1.14550 0.91748 1.25051 0.97267 0.99676 0.97648 1.70036 1.37595 1.16367 1.30591 0.86329 0.81153 0.76917 0.82561 1.21422 1.21591 1.20529 1.20781 0.89446 0.90920 0.96425 1.22651 1.00344 0.95276 1.01432 1.86168 1.62542 1.53770 1.18059 1.18780 0.89645 0.89468 0.90971 1.20641 1.02184 1.02395 0.92323 1.20915 0.94676 0.95294 0.99094 1.20939 0.98832 1.02709 0.96176 1.21145 0.99279 0.95520 0.93088 1.20045 0.98127 1.03354 0.97082 0.93776 0.93769 0.89012 0.90138 0.90142 0.76468 0.89289 0.90270 0.90602 0.92212 0.89381 0.95434 0.93655 0.95943 0.92772 0.90730 0.92305 0.85155 0.85814 0.86465 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.78 10.24 -55.14 -0.56 -4.35 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.51 5.82 6.48 -10.98 -0.07 5.75 16 5 O -0.51 -8.19 14.38 -14.35 -0.21 -8.40 16 6 N -0.72 -7.11 4.87 -54.86 -0.27 -7.37 16 7 C 0.20 2.53 2.05 -69.01 -0.14 2.39 16 8 H 0.10 1.54 6.42 -51.92 -0.33 1.21 16 9 C -0.16 -1.95 4.56 -26.54 -0.12 -2.07 16 10 C 0.14 2.26 0.67 -90.56 -0.06 2.20 16 11 C -0.13 -2.28 5.12 -26.67 -0.14 -2.42 16 12 C 0.17 4.11 5.07 -3.70 -0.02 4.09 16 13 N -0.59 -14.76 2.99 -172.29 -0.52 -15.28 16 14 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 15 H 0.06 1.74 7.88 -52.49 -0.41 1.32 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.08 11.20 55.49 0.62 -25.46 16 18 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.28 6.29 -3.69 -0.02 3.26 16 23 C -0.16 -2.80 4.41 -26.66 -0.12 -2.92 16 24 O -0.29 -5.24 8.54 -19.41 -0.17 -5.41 16 25 C 0.16 2.57 6.02 -39.20 -0.24 2.33 16 26 C -0.16 -2.38 9.94 -39.34 -0.39 -2.77 16 27 C -0.08 -1.06 10.04 -39.66 -0.40 -1.46 16 28 C -0.17 -2.20 10.04 -39.61 -0.40 -2.60 16 29 C -0.07 -1.03 9.07 -39.53 -0.36 -1.39 16 30 C -0.18 -2.71 4.97 -104.44 -0.52 -3.23 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.40 2.66 8.57 -40.82 -0.35 2.31 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.90 8.10 -51.93 -0.42 0.47 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 42 H 0.03 0.71 7.86 -51.93 -0.41 0.30 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.02 0.52 7.84 -51.93 -0.41 0.11 16 45 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.06 1.01 5.81 -51.93 -0.30 0.70 16 48 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 49 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 50 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 51 H 0.13 1.84 4.66 -52.49 -0.24 1.60 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -33.96 396.70 -9.84 -43.80 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.81 Total: 3.96 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.88 Total: -4.04 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.16 Total: -48.11 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.94 Total: -18.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.96 -9.84 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096053081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.601 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds