Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.50706 * 109.46958 * 179.97438 * 3 2 1 5 5 O 1.21281 * 119.99955 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00093 * 179.97438 * 4 3 2 7 7 C 1.46490 * 120.00126 * 180.02562 * 6 4 3 8 8 H 1.09008 * 109.42994 * 324.88812 * 7 6 4 9 9 C 1.53078 * 109.42679 * 205.00021 * 7 6 4 10 10 C 1.53294 * 108.32670 * 192.14522 * 9 7 6 11 11 C 1.52902 * 109.52047 * 184.48678 * 10 9 7 12 12 C 1.53211 * 109.35347 * 181.35936 * 11 10 9 13 13 N 1.46928 * 108.77497 * 305.55601 * 12 11 10 14 14 C 1.36942 * 120.62325 * 233.37074 * 13 12 11 15 15 H 1.07994 * 119.99541 * 151.87170 * 14 13 12 16 16 C 1.38805 * 120.00056 * 331.87732 * 14 13 12 17 17 N 1.31623 * 120.00447 * 343.10495 * 16 14 13 18 18 Si 1.86801 * 120.00142 * 163.10834 * 16 14 13 19 19 H 1.48504 * 109.47151 * 89.99522 * 18 16 14 20 20 H 1.48499 * 109.47178 * 209.99859 * 18 16 14 21 21 H 1.48507 * 109.46748 * 329.99921 * 18 16 14 22 22 C 1.46931 * 118.75255 * 53.65478 * 13 12 11 23 23 C 1.52925 * 109.49513 * 304.88327 * 10 9 7 24 24 O 1.42729 * 108.53128 * 64.63455 * 10 9 7 25 25 C 1.35893 * 117.72298 * 310.56268 * 24 10 9 26 26 C 1.39141 * 118.49281 * 197.25605 * 25 24 10 27 27 C 1.37976 * 120.20406 * 180.28904 * 26 25 24 28 28 C 1.38294 * 119.94921 * 0.02562 * 27 26 25 29 29 C 1.38101 * 119.99181 * 359.94077 * 28 27 26 30 30 C 1.38363 * 121.77800 * 17.47776 * 25 24 10 31 31 H 1.08995 * 109.47373 * 299.99951 * 1 2 3 32 32 H 1.09005 * 109.47358 * 60.00230 * 1 2 3 33 33 H 1.09007 * 109.47128 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47067 * 59.99841 * 3 2 1 35 35 H 1.08994 * 109.47409 * 299.99535 * 3 2 1 36 36 H 0.97004 * 119.99655 * 0.02562 * 6 4 3 37 37 H 1.09003 * 109.69177 * 72.44257 * 9 7 6 38 38 H 1.08996 * 109.69048 * 311.86008 * 9 7 6 39 39 H 1.09000 * 109.48680 * 61.39594 * 11 10 9 40 40 H 1.09000 * 109.51508 * 301.33753 * 11 10 9 41 41 H 1.09004 * 109.58611 * 185.77232 * 12 11 10 42 42 H 1.08993 * 109.70486 * 65.41759 * 12 11 10 43 43 H 0.96998 * 120.00495 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.59265 * 66.07175 * 22 13 12 45 45 H 1.08998 * 109.59061 * 186.51326 * 22 13 12 46 46 H 1.08998 * 109.50142 * 298.53481 * 23 10 9 47 47 H 1.09003 * 109.49761 * 58.62606 * 23 10 9 48 48 H 1.08000 * 119.90198 * 0.25626 * 26 25 24 49 49 H 1.07993 * 120.02718 * 180.02562 * 27 26 25 50 50 H 1.07993 * 120.00292 * 179.97438 * 28 27 26 51 51 H 1.08002 * 119.83805 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7367 2.1812 0.0003 8 1 6.0319 1.3145 0.5919 9 6 6.3476 3.4456 0.6099 10 6 7.8537 3.4391 0.3246 11 6 8.5101 4.6337 1.0174 12 6 10.0094 4.6427 0.7019 13 7 10.5783 3.3394 1.0716 14 6 11.6634 3.2626 1.9034 15 1 11.8066 2.3912 2.5249 16 6 12.5791 4.3048 1.9476 17 7 12.6059 5.1989 0.9819 18 14 13.7737 4.4386 3.3775 19 1 15.0157 3.6905 3.0566 20 1 14.1034 5.8669 3.6150 21 1 13.1513 3.8647 4.5976 22 6 9.9648 2.1204 0.5271 23 6 8.4663 2.1385 0.8459 24 8 8.0485 3.5316 -1.0863 25 6 7.3443 2.6815 -1.8788 26 6 7.7674 2.4932 -3.1909 27 6 7.0751 1.6427 -4.0282 28 6 5.9568 0.9751 -3.5631 29 6 5.5347 1.1592 -2.2612 30 6 6.2264 2.0108 -1.4155 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.6885 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8592 3.1726 -0.0001 37 1 6.1778 3.4531 1.6866 38 1 5.8921 4.3274 0.1595 39 1 8.3656 4.5536 2.0948 40 1 8.0572 5.5574 0.6574 41 1 10.4986 5.4306 1.2747 42 1 10.1597 4.8182 -0.3632 43 1 13.2461 5.9270 1.0126 44 1 10.1084 2.0901 -0.5530 45 1 10.4251 1.2443 0.9838 46 1 8.3231 2.0755 1.9246 47 1 7.9817 1.2893 0.3640 48 1 8.6401 3.0149 -3.5554 49 1 7.4062 1.4984 -5.0459 50 1 5.4141 0.3095 -4.2178 51 1 4.6613 0.6363 -1.9004 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096053081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -80.334446 kcal Electronic energy + Delta-G solvation = -33893.780493 eV Core-core repulsion = 29565.505347 eV Total energy + Delta-G solvation = -4328.275146 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.45467 -40.76292 -39.32379 -38.44665 -37.51005 -36.63430 -34.69763 -33.20013 -32.43486 -31.50422 -31.04827 -29.94878 -29.28085 -27.04635 -26.29497 -24.97618 -24.18390 -23.70202 -23.25919 -21.77621 -21.71441 -20.20580 -18.95647 -18.50827 -18.37740 -17.74650 -17.23197 -17.01967 -16.81110 -16.71128 -16.50201 -16.07171 -15.68013 -15.64429 -15.45316 -15.38528 -15.02676 -14.94215 -14.61158 -14.33252 -14.16323 -14.06881 -13.79892 -13.33303 -13.24626 -13.12636 -13.06026 -12.91915 -12.59883 -12.51356 -12.48407 -12.33524 -12.24636 -12.19261 -12.03598 -11.83125 -11.65117 -11.21237 -11.08759 -10.84724 -10.74170 -10.54105 -10.25564 -9.79521 -9.09217 -8.67849 -7.86824 -5.33143 0.31315 0.47792 1.47167 1.47990 1.51620 1.58345 1.78280 2.32166 2.51661 2.82355 3.12055 3.27634 3.45116 3.55613 3.66305 3.68388 3.74223 3.84655 3.97860 4.10658 4.18335 4.22329 4.22812 4.29223 4.40607 4.49095 4.52477 4.52864 4.59805 4.60377 4.61485 4.72273 4.76595 4.85388 4.89806 4.92591 4.96888 5.05677 5.06691 5.12767 5.26266 5.29021 5.37710 5.44979 5.52456 5.59689 5.64586 5.78256 5.90430 6.05017 6.38983 6.50981 6.62153 7.15160 7.18415 7.84976 8.38773 9.19514 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.002660 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.173308 B =10524.674454 C =11581.885875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.046 3.954 4 C 0.509 3.491 5 O -0.565 6.565 6 N -0.702 5.702 7 C 0.201 3.799 8 H 0.083 0.917 9 C -0.141 4.141 10 C 0.136 3.864 11 C -0.114 4.114 12 C 0.183 3.817 13 N -0.606 5.606 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.049 4.049 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.269 1.269 22 C 0.150 3.850 23 C -0.144 4.144 24 O -0.316 6.316 25 C 0.134 3.866 26 C -0.175 4.175 27 C -0.077 4.077 28 C -0.164 4.164 29 C -0.081 4.081 30 C -0.185 4.185 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.420 0.580 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.057 0.943 42 H -0.007 1.007 43 H 0.250 0.750 44 H 0.001 0.999 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.064 0.936 48 H 0.123 0.877 49 H 0.153 0.847 50 H 0.143 0.857 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.994 -3.103 -4.512 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.034 4.034 4 C 0.296 3.704 5 O -0.443 6.443 6 N -0.356 5.356 7 C 0.096 3.904 8 H 0.101 0.899 9 C -0.179 4.179 10 C 0.098 3.902 11 C -0.153 4.153 12 C 0.058 3.942 13 N -0.329 5.329 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.245 4.245 17 N -0.580 5.580 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.194 1.194 22 C 0.024 3.976 23 C -0.183 4.183 24 O -0.231 6.231 25 C 0.088 3.912 26 C -0.194 4.194 27 C -0.095 4.095 28 C -0.182 4.182 29 C -0.099 4.099 30 C -0.187 4.187 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.258 0.742 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.019 0.981 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.141 0.859 49 H 0.170 0.830 50 H 0.161 0.839 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.302 -3.780 -4.542 26.958 hybrid contribution 0.946 0.562 0.428 1.181 sum -25.356 -3.218 -4.114 25.888 Atomic orbital electron populations 1.23026 0.78287 1.04094 1.01674 1.87971 1.22113 1.26696 1.95808 1.22380 0.88552 0.86887 1.05536 1.21002 0.90308 0.84018 0.75062 1.90743 1.75581 1.28339 1.49645 1.45758 1.05168 1.09671 1.75033 1.19472 0.80185 0.99195 0.91561 0.89922 1.22461 0.93820 0.97627 1.03989 1.21651 0.94267 0.96567 0.77746 1.22055 0.97026 0.96116 1.00089 1.20472 0.90017 0.87897 0.95844 1.44309 1.32757 1.01151 1.54697 1.19492 1.00473 1.04721 1.14754 0.91731 1.25823 0.99153 0.99536 0.99980 1.70204 1.38496 1.16925 1.32367 0.85277 0.78777 0.76606 0.79758 1.21453 1.21631 1.19352 1.20819 0.92237 0.89656 0.94866 1.22470 0.97038 0.96759 1.02024 1.86137 1.63634 1.54671 1.18647 1.18982 0.90484 0.90497 0.91248 1.20837 1.02569 1.03296 0.92696 1.21210 0.94137 0.94049 1.00060 1.21282 0.98573 1.02304 0.96078 1.21269 0.99426 0.95537 0.93683 1.20189 0.97560 1.02926 0.98016 0.92178 0.92178 0.88951 0.87012 0.87242 0.74194 0.87147 0.88193 0.89400 0.90052 0.92418 0.98914 0.94055 0.98118 0.93246 0.89875 0.91708 0.85946 0.82956 0.83927 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.61 10.24 -129.94 -1.33 -8.94 16 3 C 0.05 0.57 6.42 71.24 0.46 1.03 16 4 C 0.51 10.52 6.48 87.66 0.57 11.08 16 5 O -0.56 -17.74 14.38 16.00 0.23 -17.51 16 6 N -0.70 -12.00 4.87 -445.87 -2.17 -14.17 16 7 C 0.20 4.85 2.05 44.29 0.09 4.94 16 8 H 0.08 2.39 6.42 -2.38 -0.02 2.38 16 9 C -0.14 -3.18 4.56 30.72 0.14 -3.04 16 10 C 0.14 4.37 0.67 -10.75 -0.01 4.36 16 11 C -0.11 -4.05 5.12 30.63 0.16 -3.89 16 12 C 0.18 8.94 5.07 86.37 0.44 9.38 16 13 N -0.61 -31.27 2.99 -699.01 -2.09 -33.36 16 14 C -0.26 -14.80 9.58 84.03 0.81 -14.00 16 15 H 0.06 3.54 7.88 -2.91 -0.02 3.51 16 16 C -0.05 -2.79 4.92 84.86 0.42 -2.38 16 17 N -0.93 -55.97 11.20 21.65 0.24 -55.72 16 18 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.15 6.76 6.29 86.37 0.54 7.30 16 23 C -0.14 -5.10 4.41 30.64 0.13 -4.97 16 24 O -0.32 -11.50 8.54 -92.35 -0.79 -12.28 16 25 C 0.13 4.34 6.02 22.52 0.14 4.48 16 26 C -0.18 -5.34 9.94 22.42 0.22 -5.12 16 27 C -0.08 -1.88 10.04 22.22 0.22 -1.66 16 28 C -0.16 -3.97 10.04 22.25 0.22 -3.75 16 29 C -0.08 -2.20 9.07 22.30 0.20 -2.00 16 30 C -0.18 -5.26 4.97 -19.75 -0.10 -5.36 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.42 3.96 8.57 -92.71 -0.79 3.16 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 1.89 8.10 -2.39 -0.02 1.87 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 42 H -0.01 -0.40 7.86 -2.39 -0.02 -0.42 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.00 0.04 7.84 -2.39 -0.02 0.02 16 45 H 0.05 2.20 7.93 -2.39 -0.02 2.18 16 46 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 47 H 0.06 2.22 5.81 -2.39 -0.01 2.21 16 48 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 49 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 50 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 51 H 0.13 3.49 4.66 -2.91 -0.01 3.48 16 Total: -1.00 -78.22 396.70 2.18 -76.04 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.15 Total: 20.89 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 5.90 Total: -2.10 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -4.02 Total: -103.25 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.89 Total: -38.74 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.22 2.18 -76.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096053081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.295 kcal (2) G-P(sol) polarization free energy of solvation -78.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds