Wall clock time and date at job start Tue Mar 31 2020 06:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99502 * 2 1 4 4 C 1.50705 * 109.46730 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00004 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99971 * 179.72727 * 4 3 2 7 7 C 1.46495 * 120.00180 * 180.27306 * 6 4 3 8 8 H 1.09005 * 109.44272 * 34.99976 * 7 6 4 9 9 C 1.53083 * 109.44374 * 154.92406 * 7 6 4 10 10 C 1.53315 * 108.32480 * 168.34678 * 9 7 6 11 11 C 1.52936 * 109.41581 * 175.74733 * 10 9 7 12 12 C 1.53191 * 109.37492 * 178.82531 * 11 10 9 13 13 N 1.46933 * 108.75762 * 54.51271 * 12 11 10 14 14 C 1.36948 * 120.64009 * 126.23138 * 13 12 11 15 15 H 1.07999 * 119.99621 * 208.04311 * 14 13 12 16 16 C 1.38808 * 119.99969 * 28.03884 * 14 13 12 17 17 N 1.31625 * 120.00126 * 17.54816 * 16 14 13 18 18 Si 1.86797 * 120.00051 * 197.54086 * 16 14 13 19 19 H 1.48497 * 109.47180 * 94.06989 * 18 16 14 20 20 H 1.48499 * 109.47676 * 214.07502 * 18 16 14 21 21 H 1.48504 * 109.47046 * 334.07513 * 18 16 14 22 22 C 1.46929 * 118.71485 * 306.25093 * 13 12 11 23 23 C 1.52914 * 109.45230 * 55.44456 * 10 9 7 24 24 O 1.42686 * 108.60795 * 295.55729 * 10 9 7 25 25 C 1.35854 * 117.97500 * 48.52564 * 24 10 9 26 26 C 1.39157 * 118.49403 * 163.53413 * 25 24 10 27 27 C 1.37816 * 120.25444 * 179.69874 * 26 25 24 28 28 C 1.38287 * 119.94766 * 0.07272 * 27 26 25 29 29 C 1.38107 * 119.98294 * 0.02562 * 28 27 26 30 30 C 1.38313 * 121.81044 * 343.40531 * 25 24 10 31 31 H 1.09000 * 109.46975 * 60.00337 * 1 2 3 32 32 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47126 * 300.00100 * 1 2 3 34 34 H 1.08994 * 109.47269 * 60.00069 * 3 2 1 35 35 H 1.08999 * 109.46996 * 299.99557 * 3 2 1 36 36 H 0.97001 * 120.00179 * 0.27187 * 6 4 3 37 37 H 1.08998 * 109.69739 * 288.05723 * 9 7 6 38 38 H 1.09007 * 109.69414 * 48.64289 * 9 7 6 39 39 H 1.08997 * 109.48597 * 298.80264 * 11 10 9 40 40 H 1.09001 * 109.48760 * 58.85415 * 11 10 9 41 41 H 1.09004 * 109.59214 * 294.72865 * 12 11 10 42 42 H 1.09002 * 109.71022 * 174.37071 * 12 11 10 43 43 H 0.96996 * 119.99837 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.58942 * 293.93810 * 22 13 12 45 45 H 1.09001 * 109.58435 * 173.50917 * 22 13 12 46 46 H 1.09001 * 109.48584 * 301.10157 * 23 10 9 47 47 H 1.08994 * 109.48583 * 61.14995 * 23 10 9 48 48 H 1.08006 * 119.89158 * 359.74334 * 26 25 24 49 49 H 1.07998 * 120.03112 * 180.02562 * 27 26 25 50 50 H 1.08001 * 120.01197 * 180.02562 * 28 27 26 51 51 H 1.07995 * 119.84282 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0063 7 6 5.7368 2.1813 -0.0130 8 1 6.0293 1.3122 -0.6023 9 6 6.3451 3.4433 -0.6300 10 6 7.8546 3.4313 -0.3623 11 6 8.5041 4.6277 -1.0593 12 6 10.0078 4.6313 -0.7671 13 7 10.5674 3.3288 -1.1536 14 6 11.6342 3.2535 -2.0090 15 1 11.7636 2.3834 -2.6355 16 6 12.5490 4.2957 -2.0709 17 7 12.6057 5.1803 -1.0979 18 14 13.6997 4.4427 -3.5350 19 1 13.1016 5.3519 -4.5454 20 1 15.0045 4.9913 -3.0861 21 1 13.9076 3.1015 -4.1378 22 6 9.9599 2.1086 -0.6049 23 6 8.4565 2.1317 -0.8982 24 8 8.0681 3.5187 1.0457 25 6 7.3604 2.6838 1.8506 26 6 7.7901 2.5035 3.1619 27 6 7.0958 1.6697 4.0116 28 6 5.9685 1.0077 3.5606 29 6 5.5399 1.1823 2.2594 30 6 6.2339 2.0191 1.4012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8593 3.1726 -0.0060 37 1 6.1626 3.4515 -1.7045 38 1 5.8983 4.3270 -0.1743 39 1 8.3427 4.5536 -2.1347 40 1 8.0592 5.5507 -0.6874 41 1 10.1730 4.7986 0.2973 42 1 10.4919 5.4218 -1.3406 43 1 13.2452 5.9083 -1.1410 44 1 10.1215 2.0726 0.4724 45 1 10.4102 1.2337 -1.0736 46 1 7.9781 1.2817 -0.4117 47 1 8.2950 2.0729 -1.9745 48 1 8.6706 3.0194 3.5155 49 1 7.4322 1.5326 5.0286 50 1 5.4234 0.3543 4.2257 51 1 4.6594 0.6640 1.9095 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096053082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:07 Heat of formation + Delta-G solvation = -58.606789 kcal Electronic energy + Delta-G solvation = -33882.352753 eV Core-core repulsion = 29555.019789 eV Total energy + Delta-G solvation = -4327.332964 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.30231 -39.81555 -38.10118 -37.76002 -35.91020 -35.60510 -33.12838 -31.85152 -30.90439 -30.16579 -29.68728 -29.13373 -27.98872 -26.31130 -24.79576 -23.71836 -22.76433 -22.28472 -22.00850 -20.86270 -20.15613 -18.96929 -17.72318 -17.38694 -17.15287 -16.83418 -16.53708 -15.88567 -15.57013 -15.47900 -14.97261 -14.82626 -14.72434 -14.63939 -14.15421 -13.98896 -13.54975 -13.39174 -13.30847 -13.20988 -13.02342 -12.91813 -12.65617 -12.37974 -12.10099 -11.88133 -11.57051 -11.46136 -11.38527 -11.34381 -11.15118 -10.98686 -10.73105 -10.56467 -10.34357 -10.23269 -10.22048 -10.01385 -9.85828 -9.53699 -9.45447 -9.32354 -8.70819 -8.44998 -7.91814 -6.64727 -5.76988 -3.19137 1.39748 1.61469 2.33748 2.53131 3.38299 3.45775 3.47235 3.51517 3.69205 3.96174 4.35026 4.50897 4.59563 4.62357 4.67215 4.74710 4.83377 4.89700 4.94472 5.05648 5.09207 5.19689 5.25611 5.33186 5.38334 5.42049 5.49281 5.59385 5.63756 5.69340 5.79864 5.88176 6.02900 6.10849 6.17976 6.21767 6.29955 6.44226 6.47316 6.48424 6.54969 6.59552 6.64442 6.67593 6.76578 6.97279 7.02433 7.21703 7.36410 7.69682 7.81081 7.84976 7.96231 8.46634 9.23283 9.86512 10.44376 11.31502 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002664 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.644888 B =10506.400801 C =11591.639492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.511 6.511 6 N -0.719 5.719 7 C 0.195 3.805 8 H 0.104 0.896 9 C -0.156 4.156 10 C 0.138 3.862 11 C -0.126 4.126 12 C 0.174 3.826 13 N -0.591 5.591 14 C -0.252 4.252 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C 0.151 3.849 23 C -0.157 4.157 24 O -0.292 6.292 25 C 0.159 3.841 26 C -0.157 4.157 27 C -0.081 4.081 28 C -0.169 4.169 29 C -0.071 4.071 30 C -0.185 4.185 31 H 0.044 0.956 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.088 0.912 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.130 0.870 49 H 0.124 0.876 50 H 0.117 0.883 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.943 -3.172 5.328 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.038 4.038 4 C 0.297 3.703 5 O -0.386 6.386 6 N -0.372 5.372 7 C 0.091 3.909 8 H 0.121 0.879 9 C -0.194 4.194 10 C 0.099 3.901 11 C -0.166 4.166 12 C 0.048 3.952 13 N -0.313 5.313 14 C -0.381 4.381 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.024 3.976 23 C -0.197 4.197 24 O -0.205 6.205 25 C 0.112 3.888 26 C -0.176 4.176 27 C -0.100 4.100 28 C -0.187 4.187 29 C -0.089 4.089 30 C -0.187 4.187 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.148 0.852 49 H 0.142 0.858 50 H 0.135 0.865 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.182 -3.886 5.360 24.109 hybrid contribution -0.051 0.698 -0.744 1.021 sum -23.233 -3.188 4.616 23.901 Atomic orbital electron populations 1.22850 0.80298 1.03415 1.00131 1.88033 1.19832 1.25043 1.95423 1.22252 0.91621 0.87166 1.02726 1.20264 0.88657 0.84799 0.76571 1.90769 1.74394 1.26314 1.47115 1.45971 1.06567 1.08740 1.75884 1.19732 0.78314 0.99929 0.92893 0.87855 1.22599 0.97267 0.97023 1.02491 1.21722 0.91597 0.98570 0.78162 1.22257 1.01289 0.94044 0.98975 1.20719 0.86468 0.89364 0.98623 1.44058 1.34337 0.99791 1.53139 1.19205 1.00824 1.04777 1.13328 0.91672 1.25045 0.97235 0.99776 0.97603 1.70049 1.37618 1.16767 1.30089 0.86290 0.80152 0.77845 0.82582 1.21521 1.21817 1.20422 1.20775 0.89416 0.90882 0.96488 1.22642 1.00411 0.95279 1.01351 1.86123 1.61575 1.54931 1.17915 1.18766 0.89605 0.89574 0.90848 1.20600 1.02156 1.02602 0.92199 1.20874 0.94646 0.95365 0.99066 1.20939 0.98729 1.02805 0.96219 1.21117 0.99281 0.95542 0.93009 1.20031 0.98009 1.03562 0.97081 0.93774 0.89011 0.93767 0.90148 0.90132 0.76469 0.89280 0.90275 0.90600 0.92216 0.95448 0.89345 0.93665 0.95912 0.92754 0.92319 0.90727 0.85163 0.85809 0.86465 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.78 10.24 -55.14 -0.56 -4.35 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.51 5.82 6.46 -10.98 -0.07 5.75 16 5 O -0.51 -8.20 14.44 -14.35 -0.21 -8.41 16 6 N -0.72 -7.10 4.86 -54.86 -0.27 -7.37 16 7 C 0.20 2.52 2.06 -69.01 -0.14 2.38 16 8 H 0.10 1.55 6.39 -51.93 -0.33 1.21 16 9 C -0.16 -1.95 4.54 -26.53 -0.12 -2.07 16 10 C 0.14 2.27 0.67 -90.53 -0.06 2.21 16 11 C -0.13 -2.28 5.11 -26.67 -0.14 -2.42 16 12 C 0.17 4.09 5.10 -3.71 -0.02 4.07 16 13 N -0.59 -14.75 2.99 -172.31 -0.52 -15.26 16 14 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 15 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 16 C 0.00 0.06 4.90 -17.43 -0.09 -0.03 16 17 N -0.90 -26.06 11.22 55.49 0.62 -25.44 16 18 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.28 6.30 -3.71 -0.02 3.26 16 23 C -0.16 -2.79 4.42 -26.68 -0.12 -2.91 16 24 O -0.29 -5.24 8.54 -19.28 -0.16 -5.40 16 25 C 0.16 2.58 6.06 -39.21 -0.24 2.34 16 26 C -0.16 -2.37 9.93 -39.39 -0.39 -2.76 16 27 C -0.08 -1.05 10.03 -39.72 -0.40 -1.45 16 28 C -0.17 -2.20 10.04 -39.61 -0.40 -2.59 16 29 C -0.07 -1.01 9.07 -39.53 -0.36 -1.37 16 30 C -0.18 -2.72 5.01 -104.46 -0.52 -3.24 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.40 2.65 8.58 -40.82 -0.35 2.30 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.70 7.85 -51.93 -0.41 0.29 16 42 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 45 H 0.05 1.17 7.93 -51.93 -0.41 0.75 16 46 H 0.06 1.00 5.86 -51.93 -0.30 0.70 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 49 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 50 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 51 H 0.13 1.82 4.69 -52.49 -0.25 1.58 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -33.95 396.87 -9.85 -43.79 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.82 Total: 3.89 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -1.88 Total: -4.02 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.16 Total: -48.07 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.94 Total: -18.16 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.95 -9.85 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096053082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.814 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds