Wall clock time and date at job start Tue Mar 31 2020 06:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99502 * 2 1 4 4 C 1.50705 * 109.46730 * 180.02562 * 3 2 1 5 5 O 1.21282 * 120.00004 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99971 * 179.72727 * 4 3 2 7 7 C 1.46495 * 120.00180 * 180.27306 * 6 4 3 8 8 H 1.09005 * 109.44272 * 34.99976 * 7 6 4 9 9 C 1.53083 * 109.44374 * 154.92406 * 7 6 4 10 10 C 1.53315 * 108.32480 * 168.34678 * 9 7 6 11 11 C 1.52936 * 109.41581 * 175.74733 * 10 9 7 12 12 C 1.53191 * 109.37492 * 178.82531 * 11 10 9 13 13 N 1.46933 * 108.75762 * 54.51271 * 12 11 10 14 14 C 1.36948 * 120.64009 * 126.23138 * 13 12 11 15 15 H 1.07999 * 119.99621 * 208.04311 * 14 13 12 16 16 C 1.38808 * 119.99969 * 28.03884 * 14 13 12 17 17 N 1.31625 * 120.00126 * 17.54816 * 16 14 13 18 18 Si 1.86797 * 120.00051 * 197.54086 * 16 14 13 19 19 H 1.48497 * 109.47180 * 94.06989 * 18 16 14 20 20 H 1.48499 * 109.47676 * 214.07502 * 18 16 14 21 21 H 1.48504 * 109.47046 * 334.07513 * 18 16 14 22 22 C 1.46929 * 118.71485 * 306.25093 * 13 12 11 23 23 C 1.52914 * 109.45230 * 55.44456 * 10 9 7 24 24 O 1.42686 * 108.60795 * 295.55729 * 10 9 7 25 25 C 1.35854 * 117.97500 * 48.52564 * 24 10 9 26 26 C 1.39157 * 118.49403 * 163.53413 * 25 24 10 27 27 C 1.37816 * 120.25444 * 179.69874 * 26 25 24 28 28 C 1.38287 * 119.94766 * 0.07272 * 27 26 25 29 29 C 1.38107 * 119.98294 * 0.02562 * 28 27 26 30 30 C 1.38313 * 121.81044 * 343.40531 * 25 24 10 31 31 H 1.09000 * 109.46975 * 60.00337 * 1 2 3 32 32 H 1.09001 * 109.46697 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47126 * 300.00100 * 1 2 3 34 34 H 1.08994 * 109.47269 * 60.00069 * 3 2 1 35 35 H 1.08999 * 109.46996 * 299.99557 * 3 2 1 36 36 H 0.97001 * 120.00179 * 0.27187 * 6 4 3 37 37 H 1.08998 * 109.69739 * 288.05723 * 9 7 6 38 38 H 1.09007 * 109.69414 * 48.64289 * 9 7 6 39 39 H 1.08997 * 109.48597 * 298.80264 * 11 10 9 40 40 H 1.09001 * 109.48760 * 58.85415 * 11 10 9 41 41 H 1.09004 * 109.59214 * 294.72865 * 12 11 10 42 42 H 1.09002 * 109.71022 * 174.37071 * 12 11 10 43 43 H 0.96996 * 119.99837 * 179.97438 * 17 16 14 44 44 H 1.08999 * 109.58942 * 293.93810 * 22 13 12 45 45 H 1.09001 * 109.58435 * 173.50917 * 22 13 12 46 46 H 1.09001 * 109.48584 * 301.10157 * 23 10 9 47 47 H 1.08994 * 109.48583 * 61.14995 * 23 10 9 48 48 H 1.08006 * 119.89158 * 359.74334 * 26 25 24 49 49 H 1.07998 * 120.03112 * 180.02562 * 27 26 25 50 50 H 1.08001 * 120.01197 * 180.02562 * 28 27 26 51 51 H 1.07995 * 119.84282 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0006 6 7 4.2764 2.2969 -0.0063 7 6 5.7368 2.1813 -0.0130 8 1 6.0293 1.3122 -0.6023 9 6 6.3451 3.4433 -0.6300 10 6 7.8546 3.4313 -0.3623 11 6 8.5041 4.6277 -1.0593 12 6 10.0078 4.6313 -0.7671 13 7 10.5674 3.3288 -1.1536 14 6 11.6342 3.2535 -2.0090 15 1 11.7636 2.3834 -2.6355 16 6 12.5490 4.2957 -2.0709 17 7 12.6057 5.1803 -1.0979 18 14 13.6997 4.4427 -3.5350 19 1 13.1016 5.3519 -4.5454 20 1 15.0045 4.9913 -3.0861 21 1 13.9076 3.1015 -4.1378 22 6 9.9599 2.1086 -0.6049 23 6 8.4565 2.1317 -0.8982 24 8 8.0681 3.5187 1.0457 25 6 7.3604 2.6838 1.8506 26 6 7.7901 2.5035 3.1619 27 6 7.0958 1.6697 4.0116 28 6 5.9685 1.0077 3.5606 29 6 5.5399 1.1823 2.2594 30 6 6.2339 2.0191 1.4012 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6885 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 3.8593 3.1726 -0.0060 37 1 6.1626 3.4515 -1.7045 38 1 5.8983 4.3270 -0.1743 39 1 8.3427 4.5536 -2.1347 40 1 8.0592 5.5507 -0.6874 41 1 10.1730 4.7986 0.2973 42 1 10.4919 5.4218 -1.3406 43 1 13.2452 5.9083 -1.1410 44 1 10.1215 2.0726 0.4724 45 1 10.4102 1.2337 -1.0736 46 1 7.9781 1.2817 -0.4117 47 1 8.2950 2.0729 -1.9745 48 1 8.6706 3.0194 3.5155 49 1 7.4322 1.5326 5.0286 50 1 5.4234 0.3543 4.2257 51 1 4.6594 0.6640 1.9095 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096053082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:06 Heat of formation + Delta-G solvation = -80.519574 kcal Electronic energy + Delta-G solvation = -33883.302962 eV Core-core repulsion = 29555.019789 eV Total energy + Delta-G solvation = -4328.283173 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.45311 -40.76195 -39.33733 -38.44706 -37.51815 -36.63743 -34.70167 -33.20196 -32.43590 -31.51308 -31.05703 -29.94755 -29.27952 -27.04826 -26.29731 -24.97877 -24.19055 -23.70470 -23.26320 -21.77933 -21.71640 -20.20892 -18.95795 -18.50710 -18.37797 -17.74556 -17.23331 -17.02431 -16.81409 -16.71225 -16.49857 -16.07731 -15.67917 -15.63757 -15.45467 -15.38705 -15.03205 -14.94431 -14.61221 -14.33792 -14.17439 -14.06900 -13.80364 -13.33404 -13.24439 -13.12634 -13.07045 -12.91893 -12.61216 -12.51620 -12.49471 -12.33623 -12.24651 -12.16218 -12.03055 -11.83255 -11.65500 -11.21917 -11.08742 -10.84896 -10.74274 -10.54226 -10.25990 -9.80025 -9.08872 -8.68704 -7.87029 -5.33058 0.31685 0.47852 1.47568 1.48128 1.51655 1.57967 1.78033 2.31101 2.51541 2.82243 3.11917 3.27007 3.45101 3.55557 3.66084 3.68294 3.73865 3.84487 3.97549 4.10440 4.18306 4.22210 4.22830 4.29152 4.40433 4.49091 4.52451 4.52878 4.59772 4.60329 4.61210 4.72092 4.76470 4.85253 4.89784 4.92531 4.96708 5.05486 5.06514 5.12607 5.26098 5.28733 5.37769 5.44519 5.52521 5.59685 5.64616 5.77707 5.90478 6.04923 6.38688 6.50916 6.62769 7.14863 7.18382 7.84709 8.38537 9.19386 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.015266 B = 0.002664 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.644888 B =10506.400801 C =11591.639492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.046 3.954 4 C 0.509 3.491 5 O -0.565 6.565 6 N -0.702 5.702 7 C 0.201 3.799 8 H 0.083 0.917 9 C -0.141 4.141 10 C 0.136 3.864 11 C -0.114 4.114 12 C 0.182 3.818 13 N -0.606 5.606 14 C -0.264 4.264 15 H 0.065 0.935 16 C -0.049 4.049 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.282 1.282 20 H -0.296 1.296 21 H -0.270 1.270 22 C 0.150 3.850 23 C -0.144 4.144 24 O -0.316 6.316 25 C 0.134 3.866 26 C -0.175 4.175 27 C -0.076 4.076 28 C -0.165 4.165 29 C -0.080 4.080 30 C -0.186 4.186 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.420 0.580 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.081 0.919 41 H -0.007 1.007 42 H 0.058 0.942 43 H 0.250 0.750 44 H 0.001 0.999 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.123 0.877 49 H 0.153 0.847 50 H 0.143 0.857 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.996 -3.055 4.868 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.034 4.034 4 C 0.296 3.704 5 O -0.443 6.443 6 N -0.356 5.356 7 C 0.096 3.904 8 H 0.101 0.899 9 C -0.179 4.179 10 C 0.098 3.902 11 C -0.153 4.153 12 C 0.057 3.943 13 N -0.329 5.329 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.245 4.245 17 N -0.580 5.580 18 Si 0.796 3.204 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.195 1.195 22 C 0.024 3.976 23 C -0.183 4.183 24 O -0.231 6.231 25 C 0.088 3.912 26 C -0.194 4.194 27 C -0.094 4.094 28 C -0.183 4.183 29 C -0.098 4.098 30 C -0.188 4.188 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.258 0.742 37 H 0.129 0.871 38 H 0.118 0.882 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.011 0.989 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.019 0.981 45 H 0.068 0.932 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.141 0.859 49 H 0.171 0.829 50 H 0.161 0.839 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -26.291 -3.748 4.901 27.005 hybrid contribution 0.906 0.583 -0.471 1.176 sum -25.384 -3.165 4.430 25.962 Atomic orbital electron populations 1.23027 0.78283 1.04094 1.01677 1.87974 1.22116 1.26696 1.95810 1.22381 0.88548 0.86887 1.05541 1.21002 0.90309 0.84015 0.75068 1.90746 1.75585 1.28341 1.49647 1.45753 1.05164 1.09671 1.75042 1.19473 0.80168 0.99209 0.91570 0.89915 1.22469 0.93800 0.97658 1.03996 1.21647 0.94215 0.96567 0.77759 1.22060 0.97077 0.96091 1.00071 1.20479 0.90060 0.87959 0.95812 1.44305 1.34369 1.01094 1.53150 1.19515 1.01497 1.04808 1.13540 0.91705 1.25814 0.98999 0.99650 1.00030 1.70214 1.38515 1.17338 1.31896 0.85241 0.77733 0.78029 0.79354 1.20809 1.22329 1.19490 1.20814 0.92231 0.89618 0.94905 1.22461 0.97069 0.96753 1.01995 1.86092 1.62683 1.55826 1.18498 1.18969 0.90438 0.90634 0.91111 1.20797 1.02532 1.03492 0.92573 1.21171 0.94121 0.94115 1.00019 1.21283 0.98486 1.02355 0.96143 1.21241 0.99428 0.95564 0.93602 1.20175 0.97453 1.03137 0.98017 0.92178 0.88954 0.92170 0.87233 0.87011 0.74193 0.87147 0.88212 0.89409 0.90074 0.98894 0.92392 0.94066 0.98081 0.93224 0.91722 0.89851 0.85932 0.82944 0.83919 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.62 10.24 -129.94 -1.33 -8.95 16 3 C 0.05 0.57 6.42 71.24 0.46 1.03 16 4 C 0.51 10.52 6.46 87.66 0.57 11.08 16 5 O -0.56 -17.77 14.44 16.00 0.23 -17.54 16 6 N -0.70 -11.99 4.86 -445.86 -2.17 -14.15 16 7 C 0.20 4.85 2.06 44.30 0.09 4.94 16 8 H 0.08 2.40 6.39 -2.38 -0.02 2.38 16 9 C -0.14 -3.19 4.54 30.73 0.14 -3.05 16 10 C 0.14 4.38 0.67 -10.74 -0.01 4.38 16 11 C -0.11 -4.06 5.11 30.64 0.16 -3.90 16 12 C 0.18 8.90 5.10 86.36 0.44 9.34 16 13 N -0.61 -31.24 2.99 -699.06 -2.09 -33.33 16 14 C -0.26 -14.74 9.58 84.03 0.81 -13.94 16 15 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 16 C -0.05 -2.79 4.90 84.86 0.42 -2.37 16 17 N -0.93 -55.96 11.22 21.65 0.24 -55.72 16 18 Si 0.97 45.15 29.59 68.60 2.03 47.18 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.15 6.75 6.30 86.36 0.54 7.29 16 23 C -0.14 -5.09 4.42 30.63 0.14 -4.95 16 24 O -0.32 -11.48 8.54 -91.91 -0.78 -12.27 16 25 C 0.13 4.35 6.06 22.51 0.14 4.49 16 26 C -0.18 -5.32 9.93 22.39 0.22 -5.09 16 27 C -0.08 -1.87 10.03 22.18 0.22 -1.64 16 28 C -0.16 -3.96 10.04 22.25 0.22 -3.74 16 29 C -0.08 -2.17 9.07 22.30 0.20 -1.97 16 30 C -0.19 -5.27 5.01 -19.76 -0.10 -5.37 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.42 3.95 8.58 -92.71 -0.80 3.15 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.10 1.89 8.11 -2.38 -0.02 1.87 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H -0.01 -0.39 7.85 -2.38 -0.02 -0.41 16 42 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.00 0.06 7.86 -2.39 -0.02 0.04 16 45 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 46 H 0.06 2.22 5.86 -2.39 -0.01 2.20 16 47 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 48 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 49 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 50 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 51 H 0.12 3.46 4.69 -2.91 -0.01 3.44 16 Total: -1.00 -78.20 396.87 2.19 -76.01 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.15 Total: 20.77 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 5.90 Total: -2.00 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -4.01 Total: -103.20 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.88 Total: -38.76 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -78.20 2.19 -76.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096053082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.507 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds