Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99627 * 2 1 4 4 H 1.48500 * 109.47088 * 240.00557 * 3 2 1 5 5 H 1.48496 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46814 * 120.00221 * 3 2 1 7 7 C 1.37874 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00095 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46790 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99668 * 261.85028 * 10 9 7 12 12 C 1.52990 * 109.46873 * 265.12466 * 11 10 9 13 13 C 1.53008 * 117.49787 * 246.82834 * 12 11 10 14 14 C 1.53014 * 117.49693 * 178.16988 * 12 11 10 15 15 C 1.34774 * 120.00082 * 81.85271 * 10 9 7 16 16 O 1.21787 * 119.99781 * 181.41359 * 15 10 9 17 17 C 1.41753 * 119.99926 * 1.41219 * 15 10 9 18 18 C 1.36121 * 124.97947 * 171.68010 * 17 15 10 19 19 C 1.38220 * 115.02505 * 179.97438 * 18 17 15 20 20 C 1.38153 * 113.85413 * 359.96648 * 19 18 17 21 21 N 1.34454 * 107.89102 * 180.02562 * 20 19 18 22 22 C 1.32550 * 109.77536 * 359.97438 * 21 20 19 23 23 S 1.76438 * 141.35597 * 180.02562 * 22 21 20 24 24 C 1.75781 * 90.70615 * 180.02562 * 23 22 21 25 25 C 1.30931 * 109.81362 * 0.26743 * 24 23 22 26 26 N 1.34969 * 109.60501 * 0.02562 * 22 21 20 27 27 S 1.75640 * 124.98094 * 351.64377 * 17 15 10 28 28 H 0.96994 * 120.00278 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47614 * 60.00011 * 9 7 2 30 30 H 1.08996 * 109.47067 * 299.99122 * 9 7 2 31 31 H 1.08994 * 109.46990 * 25.12829 * 11 10 9 32 32 H 1.08998 * 109.46398 * 145.12798 * 11 10 9 33 33 H 1.09000 * 115.55236 * 32.50307 * 12 11 10 34 34 H 1.08994 * 117.49552 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49084 * 145.02861 * 13 12 11 36 36 H 1.08990 * 117.49988 * 214.97885 * 14 12 11 37 37 H 1.09001 * 117.49241 * 0.02562 * 14 12 11 38 38 H 1.08003 * 122.48807 * 359.94903 * 18 17 15 39 39 H 1.08001 * 125.09399 * 180.02562 * 24 23 22 40 40 H 1.08000 * 121.88276 * 179.73814 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.5425 -4.2862 -1.2565 12 6 1.6549 -5.5203 -1.4293 13 6 2.3323 -6.8911 -1.3731 14 6 1.8271 -6.3408 -2.7093 15 6 2.7669 -4.0173 1.1548 16 8 3.5778 -4.9260 1.1513 17 6 2.4159 -3.3853 2.3742 18 6 2.7941 -3.8107 3.6107 19 6 2.3351 -3.0377 4.6606 20 6 1.5669 -1.9592 4.2663 21 7 1.1877 -1.2957 5.3726 22 6 1.6760 -1.8993 6.4470 23 16 1.7071 -1.7688 8.2062 24 6 2.7062 -3.2108 8.3172 25 6 2.9501 -3.6751 7.1176 26 7 2.3928 -2.9800 6.0729 27 16 1.4302 -1.9380 2.5109 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6249 -2.5571 0.8897 31 1 2.3812 -3.6030 -2.0903 32 1 3.5887 -4.5914 -1.2339 33 1 0.6499 -5.4382 -1.0155 34 1 3.4101 -6.9137 -1.2126 35 1 1.7725 -7.7109 -0.9228 36 1 0.9355 -6.7987 -3.1373 37 1 2.5731 -6.0015 -3.4280 38 1 3.4069 -4.6873 3.7603 39 1 3.0682 -3.6461 9.2369 40 1 3.5523 -4.5575 6.9590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096404045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = 127.371343 kcal Electronic energy + Delta-G solvation = -27142.089302 eV Core-core repulsion = 23371.234597 eV Total energy + Delta-G solvation = -3770.854705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.066 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18505 -39.46888 -37.16115 -36.63900 -35.04345 -34.37370 -32.80520 -30.27075 -29.06036 -27.78104 -26.34113 -24.12332 -23.50285 -23.02861 -22.18074 -22.04351 -20.38397 -19.73048 -18.53238 -17.92256 -17.11420 -16.80286 -16.07845 -15.93714 -15.62877 -15.32411 -14.94157 -14.70929 -14.52351 -14.29112 -13.75239 -13.59102 -13.40221 -13.15316 -12.66978 -12.53472 -12.33827 -12.12122 -11.75002 -11.41706 -11.36283 -11.29542 -11.11876 -11.01357 -10.91221 -10.44661 -10.22383 -10.19295 -10.02984 -9.98260 -9.66870 -9.34155 -9.26989 -8.85184 -8.64957 -7.97857 -7.64290 -6.95168 -6.47067 -4.48077 0.59308 0.84502 1.50949 1.60055 2.03740 2.51952 2.65967 2.89054 3.04957 3.17065 3.21818 3.25041 3.71656 3.90574 4.13050 4.17410 4.54775 4.72854 4.88399 5.03640 5.06585 5.18186 5.25869 5.26861 5.43404 5.64776 5.71813 5.81756 5.91283 6.02856 6.10250 6.13382 6.30607 6.33247 6.35480 6.36720 6.55165 6.57642 6.78826 7.01103 7.28961 7.48606 7.60867 7.80341 8.08239 8.49121 8.83981 9.08629 10.55518 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.009416 B = 0.003956 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.024534 B = 7075.638361 C = 9501.018822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.078 3.922 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.223 3.777 10 N -0.594 5.594 11 C 0.155 3.845 12 C -0.162 4.162 13 C -0.171 4.171 14 C -0.180 4.180 15 C 0.594 3.406 16 O -0.560 6.560 17 C -0.270 4.270 18 C -0.044 4.044 19 C -0.019 4.019 20 C -0.092 4.092 21 N -0.424 5.424 22 C 0.179 3.821 23 S 0.175 5.825 24 C -0.250 4.250 25 C 0.076 3.924 26 N -0.414 5.414 27 S 0.438 5.562 28 H 0.275 0.725 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.193 0.807 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.553 -7.384 8.423 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.099 3.901 10 N -0.324 5.324 11 C 0.031 3.969 12 C -0.182 4.182 13 C -0.208 4.208 14 C -0.218 4.218 15 C 0.384 3.616 16 O -0.443 6.443 17 C -0.392 4.392 18 C -0.083 4.083 19 C -0.132 4.132 20 C -0.330 4.330 21 N -0.149 5.149 22 C -0.192 4.192 23 S 0.422 5.578 24 C -0.389 4.389 25 C -0.054 4.054 26 N -0.100 5.100 27 S 0.714 5.286 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.156 0.844 39 H 0.210 0.790 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.015 -5.221 8.332 9.885 hybrid contribution 2.182 -1.668 0.279 2.761 sum 3.197 -6.890 8.611 11.482 Atomic orbital electron populations 1.69881 1.05989 1.28653 1.45672 1.24969 0.95002 0.99605 0.93449 0.86558 0.80008 0.81939 0.79553 1.19575 1.20527 1.19222 1.21554 0.94652 0.90019 1.52051 0.90761 1.19727 0.88465 0.83528 0.98408 1.48018 1.44298 1.34016 1.06042 1.20866 0.97931 0.91845 0.86224 1.22777 1.01032 0.92932 1.01440 1.22949 1.00985 0.96956 0.99930 1.22922 1.03142 1.04611 0.91135 1.15614 0.80964 0.82313 0.82662 1.90733 1.35153 1.31331 1.87072 1.23131 1.13521 1.05853 0.96735 1.18692 1.01572 1.00216 0.87806 1.18637 1.11200 1.03399 0.79927 1.27578 1.03154 0.96134 1.06170 1.70274 1.23990 1.27195 0.93482 1.26434 1.00541 0.91066 1.01185 1.84623 1.56351 1.27805 0.89024 1.24858 1.09963 1.03386 1.00737 1.20406 1.00161 0.99464 0.85332 1.43436 1.39418 1.22328 1.04780 1.87994 1.42458 1.17058 0.81061 0.91470 0.92204 0.93925 0.89654 0.90640 0.87877 0.88613 0.89554 0.89160 0.88900 0.84384 0.78963 0.80459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.33 13.29 55.43 0.74 -20.60 16 2 C 0.08 1.87 4.92 -17.82 -0.09 1.78 16 3 Si 0.89 19.31 29.54 -169.99 -5.02 14.29 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -12.58 6.74 -34.44 -0.23 -12.81 16 8 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.22 4.83 4.72 -5.19 -0.02 4.81 16 10 N -0.59 -11.98 2.49 -178.42 -0.44 -12.43 16 11 C 0.15 2.67 5.61 -4.04 -0.02 2.65 16 12 C -0.16 -2.49 5.98 -90.61 -0.54 -3.03 16 13 C -0.17 -2.39 10.18 -26.68 -0.27 -2.66 16 14 C -0.18 -2.25 10.26 -26.68 -0.27 -2.52 16 15 C 0.59 12.68 7.36 -14.92 -0.11 12.57 16 16 O -0.56 -12.57 16.33 5.11 0.08 -12.49 16 17 C -0.27 -5.64 6.02 -39.00 -0.23 -5.87 16 18 C -0.04 -0.87 9.82 -40.35 -0.40 -1.26 16 19 C -0.02 -0.38 7.68 -83.44 -0.64 -1.02 16 20 C -0.09 -1.98 8.35 -16.43 -0.14 -2.12 16 21 N -0.42 -9.05 11.31 -11.71 -0.13 -9.19 16 22 C 0.18 3.20 8.91 -88.70 -0.79 2.41 16 23 S 0.18 2.11 23.38 -107.50 -2.51 -0.40 16 24 C -0.25 -2.36 11.11 29.03 0.32 -2.03 16 25 C 0.08 0.91 11.27 -16.80 -0.19 0.72 16 26 N -0.41 -7.07 3.24 -61.72 -0.20 -7.27 16 27 S 0.44 9.51 15.55 -107.50 -1.67 7.84 16 28 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.06 1.33 8.01 -51.93 -0.42 0.91 16 30 H 0.04 0.99 4.53 -21.35 -0.10 0.89 16 31 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 32 H 0.08 1.32 7.30 -51.93 -0.38 0.94 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.10 1.40 8.04 -51.93 -0.42 0.98 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.14 2.45 7.97 -52.48 -0.42 2.04 16 39 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -28.91 364.06 -11.53 -40.44 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.23 Total: 2.70 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -3.63 Total: -8.39 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.04 Total: -49.48 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Atomic # 16 Polarization: 11.62 SS G_CDS: -4.18 Total: 7.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.91 -11.53 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096404045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.813 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds