Wall clock time and date at job start Tue Mar 31 2020 07:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99627 * 2 1 4 4 H 1.48500 * 109.47088 * 240.00557 * 3 2 1 5 5 H 1.48496 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46814 * 120.00221 * 3 2 1 7 7 C 1.37874 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99627 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00095 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46790 * 180.02562 * 9 7 2 11 11 C 1.46505 * 119.99668 * 261.85028 * 10 9 7 12 12 C 1.52990 * 109.46873 * 265.12466 * 11 10 9 13 13 C 1.53008 * 117.49787 * 246.82834 * 12 11 10 14 14 C 1.53014 * 117.49693 * 178.16988 * 12 11 10 15 15 C 1.34774 * 120.00082 * 81.85271 * 10 9 7 16 16 O 1.21787 * 119.99781 * 181.41359 * 15 10 9 17 17 C 1.41753 * 119.99926 * 1.41219 * 15 10 9 18 18 C 1.36121 * 124.97947 * 171.68010 * 17 15 10 19 19 C 1.38220 * 115.02505 * 179.97438 * 18 17 15 20 20 C 1.38153 * 113.85413 * 359.96648 * 19 18 17 21 21 N 1.34454 * 107.89102 * 180.02562 * 20 19 18 22 22 C 1.32550 * 109.77536 * 359.97438 * 21 20 19 23 23 S 1.76438 * 141.35597 * 180.02562 * 22 21 20 24 24 C 1.75781 * 90.70615 * 180.02562 * 23 22 21 25 25 C 1.30931 * 109.81362 * 0.26743 * 24 23 22 26 26 N 1.34969 * 109.60501 * 0.02562 * 22 21 20 27 27 S 1.75640 * 124.98094 * 351.64377 * 17 15 10 28 28 H 0.96994 * 120.00278 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47614 * 60.00011 * 9 7 2 30 30 H 1.08996 * 109.47067 * 299.99122 * 9 7 2 31 31 H 1.08994 * 109.46990 * 25.12829 * 11 10 9 32 32 H 1.08998 * 109.46398 * 145.12798 * 11 10 9 33 33 H 1.09000 * 115.55236 * 32.50307 * 12 11 10 34 34 H 1.08994 * 117.49552 * 0.02562 * 13 12 11 35 35 H 1.09001 * 117.49084 * 145.02861 * 13 12 11 36 36 H 1.08990 * 117.49988 * 214.97885 * 14 12 11 37 37 H 1.09001 * 117.49241 * 0.02562 * 14 12 11 38 38 H 1.08003 * 122.48807 * 359.94903 * 18 17 15 39 39 H 1.08001 * 125.09399 * 180.02562 * 24 23 22 40 40 H 1.08000 * 121.88276 * 179.73814 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 2.5425 -4.2862 -1.2565 12 6 1.6549 -5.5203 -1.4293 13 6 2.3323 -6.8911 -1.3731 14 6 1.8271 -6.3408 -2.7093 15 6 2.7669 -4.0173 1.1548 16 8 3.5778 -4.9260 1.1513 17 6 2.4159 -3.3853 2.3742 18 6 2.7941 -3.8107 3.6107 19 6 2.3351 -3.0377 4.6606 20 6 1.5669 -1.9592 4.2663 21 7 1.1877 -1.2957 5.3726 22 6 1.6760 -1.8993 6.4470 23 16 1.7071 -1.7688 8.2062 24 6 2.7062 -3.2108 8.3172 25 6 2.9501 -3.6751 7.1176 26 7 2.3928 -2.9800 6.0729 27 16 1.4302 -1.9380 2.5109 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6249 -2.5571 0.8897 31 1 2.3812 -3.6030 -2.0903 32 1 3.5887 -4.5914 -1.2339 33 1 0.6499 -5.4382 -1.0155 34 1 3.4101 -6.9137 -1.2126 35 1 1.7725 -7.7109 -0.9228 36 1 0.9355 -6.7987 -3.1373 37 1 2.5731 -6.0015 -3.4280 38 1 3.4069 -4.6873 3.7603 39 1 3.0682 -3.6461 9.2369 40 1 3.5523 -4.5575 6.9590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096404045.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:44 Heat of formation + Delta-G solvation = 112.893266 kcal Electronic energy + Delta-G solvation = -27142.717119 eV Core-core repulsion = 23371.234597 eV Total energy + Delta-G solvation = -3771.482521 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.066 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.53596 -41.06344 -38.43683 -37.87374 -36.64890 -35.85565 -34.55832 -31.47533 -30.53353 -29.44048 -27.81221 -25.56551 -24.97463 -24.60154 -23.44971 -23.13510 -21.63418 -21.04370 -20.04173 -19.23634 -18.76271 -18.38955 -17.60239 -17.29321 -16.93664 -16.74588 -16.35583 -16.25160 -16.05569 -15.44336 -15.05003 -14.88214 -14.73486 -14.63731 -14.34536 -14.13776 -13.68298 -13.51724 -13.37481 -12.89091 -12.69012 -12.63634 -12.41917 -12.33101 -12.31517 -12.17371 -11.83761 -11.55960 -11.38937 -11.31643 -11.06321 -10.82758 -10.78498 -10.62251 -9.98716 -9.56169 -9.14576 -8.38919 -8.26410 -6.33393 -0.80651 -0.33614 0.38174 0.47629 0.65755 1.06471 1.32123 1.41113 1.44928 1.49129 1.50667 1.53696 2.19780 2.27622 2.41695 2.98755 3.04888 3.27641 3.55716 3.83900 3.88058 4.03442 4.09878 4.17529 4.31479 4.42154 4.46519 4.58467 4.62689 4.71375 4.79873 4.84638 4.87229 4.95182 5.04105 5.05723 5.14133 5.29891 5.31455 5.57813 5.74673 5.75181 5.82474 6.39510 6.40019 6.67530 7.16837 7.27831 8.73535 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.009416 B = 0.003956 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.024534 B = 7075.638361 C = 9501.018822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.051 3.949 3 Si 0.932 3.068 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.233 3.767 10 N -0.593 5.593 11 C 0.153 3.847 12 C -0.184 4.184 13 C -0.173 4.173 14 C -0.152 4.152 15 C 0.592 3.408 16 O -0.577 6.577 17 C -0.286 4.286 18 C -0.024 4.024 19 C -0.034 4.034 20 C -0.100 4.100 21 N -0.479 5.479 22 C 0.161 3.839 23 S 0.228 5.772 24 C -0.204 4.204 25 C 0.035 3.965 26 N -0.412 5.412 27 S 0.386 5.614 28 H 0.275 0.725 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.157 0.843 39 H 0.249 0.751 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -8.877 11.126 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.155 4.155 3 Si 0.757 3.243 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.322 5.322 11 C 0.030 3.970 12 C -0.204 4.204 13 C -0.210 4.210 14 C -0.189 4.189 15 C 0.383 3.617 16 O -0.461 6.461 17 C -0.408 4.408 18 C -0.062 4.062 19 C -0.148 4.148 20 C -0.340 4.340 21 N -0.207 5.207 22 C -0.209 4.209 23 S 0.475 5.525 24 C -0.342 4.342 25 C -0.092 4.092 26 N -0.096 5.096 27 S 0.659 5.341 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.174 0.826 39 H 0.266 0.734 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.149 -6.739 11.057 13.126 hybrid contribution 1.874 -1.268 -0.079 2.264 sum 4.023 -8.008 10.978 14.171 Atomic orbital electron populations 1.69935 1.06729 1.28905 1.47168 1.25371 0.95390 1.01352 0.93366 0.85966 0.79189 0.79950 0.79172 1.18823 1.20119 1.20247 1.21520 0.93930 0.90878 1.52082 0.92078 1.19486 0.88397 0.83498 0.97724 1.48048 1.43679 1.33638 1.06852 1.21004 0.98159 0.92708 0.85084 1.22625 1.00210 0.92801 1.04730 1.22971 1.00523 0.96111 1.01375 1.23036 1.03813 1.01886 0.90169 1.15701 0.80815 0.82169 0.83040 1.90702 1.35979 1.32101 1.87357 1.23089 1.14515 1.05947 0.97260 1.18853 1.00173 0.99931 0.87254 1.18638 1.11431 1.03073 0.81644 1.27435 1.03485 0.97104 1.05962 1.70184 1.26869 1.29193 0.94415 1.27482 0.99333 0.90658 1.03427 1.84646 1.55508 1.28488 0.83841 1.25657 1.06140 1.00655 1.01775 1.21101 1.02238 1.01252 0.84602 1.43686 1.39027 1.22450 1.04446 1.87927 1.44660 1.19139 0.82423 0.91577 0.92989 0.94468 0.89245 0.91055 0.88987 0.89380 0.88729 0.87223 0.87577 0.82573 0.73443 0.77172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.61 13.29 21.45 0.28 -45.33 16 2 C 0.05 2.52 4.92 84.65 0.42 2.94 16 3 Si 0.93 40.62 29.54 68.60 2.03 42.65 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -26.45 6.74 25.60 0.17 -26.27 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.23 10.68 4.72 85.63 0.40 11.08 16 10 N -0.59 -24.94 2.49 -836.59 -2.09 -27.03 16 11 C 0.15 5.42 5.61 86.38 0.48 5.90 16 12 C -0.18 -5.66 5.98 -10.79 -0.06 -5.73 16 13 C -0.17 -4.70 10.18 30.62 0.31 -4.39 16 14 C -0.15 -3.52 10.26 30.63 0.31 -3.20 16 15 C 0.59 26.13 7.36 85.11 0.63 26.75 16 16 O -0.58 -26.33 16.33 -4.63 -0.08 -26.40 16 17 C -0.29 -12.41 6.02 22.65 0.14 -12.27 16 18 C -0.02 -0.93 9.82 21.77 0.21 -0.72 16 19 C -0.03 -1.36 7.68 37.56 0.29 -1.07 16 20 C -0.10 -4.48 8.35 84.27 0.70 -3.77 16 21 N -0.48 -20.92 11.31 -190.96 -2.16 -23.08 16 22 C 0.16 5.56 8.91 179.68 1.60 7.16 16 23 S 0.23 4.63 23.38 -56.49 -1.32 3.31 16 24 C -0.20 -2.66 11.11 67.85 0.75 -1.90 16 25 C 0.03 0.68 11.27 83.87 0.95 1.63 16 26 N -0.41 -13.34 3.24 -349.18 -1.13 -14.48 16 27 S 0.39 17.73 15.55 -56.49 -0.88 16.85 16 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.05 2.43 8.01 -2.39 -0.02 2.41 16 30 H 0.04 1.84 4.53 -21.83 -0.10 1.74 16 31 H 0.09 3.02 8.03 -2.39 -0.02 3.00 16 32 H 0.07 2.56 7.30 -2.39 -0.02 2.54 16 33 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 35 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.16 5.43 7.97 -2.91 -0.02 5.41 16 39 H 0.25 0.50 8.06 -2.91 -0.02 0.47 16 40 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -67.23 364.06 2.97 -64.25 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 7.31 Total: -3.86 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -5.09 Total: -109.91 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.08 Total: -26.40 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 22.36 SS G_CDS: -2.20 Total: 20.16 kcal Total: -67.23 2.97 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096404045.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.147 kcal (2) G-P(sol) polarization free energy of solvation -67.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds