Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99831 * 2 1 4 4 C 1.53002 * 109.47011 * 66.05127 * 3 2 1 5 5 N 1.46496 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99834 * 179.97438 * 5 4 3 7 7 O 1.21374 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.49270 * 120.00068 * 180.02562 * 6 5 4 9 9 O 1.21393 * 119.99763 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99960 * 180.02562 * 8 6 5 11 11 C 1.38953 * 119.99906 * 175.71387 * 10 8 6 12 12 C 1.39565 * 119.83938 * 215.04534 * 11 10 8 13 13 C 1.36326 * 120.16646 * 179.71918 * 12 11 10 14 14 C 1.40919 * 119.82629 * 0.57179 * 13 12 11 15 15 C 1.41071 * 120.15371 * 179.67948 * 14 13 12 16 16 H 1.08002 * 119.99635 * 214.80225 * 15 14 13 17 17 C 1.39978 * 120.00488 * 34.80359 * 15 14 13 18 18 N 1.30830 * 119.99597 * 355.56087 * 17 15 14 19 19 Si 1.86793 * 120.00483 * 175.56130 * 17 15 14 20 20 H 1.48498 * 109.46931 * 59.99933 * 19 17 15 21 21 H 1.48502 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46974 * 299.99959 * 19 17 15 23 23 C 1.40910 * 119.68584 * 359.69801 * 14 13 12 24 24 C 1.36323 * 119.83587 * 0.02562 * 23 14 13 25 25 C 1.46902 * 111.00275 * 236.05001 * 2 1 3 26 26 C 1.54961 * 110.92784 * 190.49478 * 25 2 1 27 27 C 1.54257 * 104.16331 * 156.29408 * 26 25 2 28 28 C 1.53875 * 106.64045 * 336.44577 * 27 26 25 29 29 C 1.54264 * 106.59937 * 359.97376 * 28 27 26 30 30 H 1.09002 * 109.46911 * 183.95171 * 1 2 3 31 31 H 1.08999 * 109.47374 * 303.95275 * 1 2 3 32 32 H 1.09004 * 109.47326 * 63.95528 * 1 2 3 33 33 H 1.09005 * 109.47146 * 186.04558 * 3 2 1 34 34 H 1.09001 * 109.47287 * 306.04674 * 3 2 1 35 35 H 1.09005 * 109.46701 * 299.99704 * 4 3 2 36 36 H 1.09001 * 109.47464 * 59.99656 * 4 3 2 37 37 H 0.97001 * 120.00350 * 359.97438 * 5 4 3 38 38 H 0.96995 * 120.00492 * 355.71049 * 10 8 6 39 39 H 1.08000 * 119.91791 * 359.97438 * 12 11 10 40 40 H 1.07992 * 120.08798 * 180.26915 * 13 12 11 41 41 H 0.96996 * 119.99906 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.08504 * 179.97438 * 23 14 13 43 43 H 1.07999 * 119.92223 * 179.97438 * 24 23 14 44 44 H 1.09004 * 110.67199 * 67.18482 * 25 2 1 45 45 H 1.08994 * 110.47555 * 37.63714 * 26 25 2 46 46 H 1.09003 * 110.52702 * 274.97895 * 26 25 2 47 47 H 1.09002 * 110.03538 * 217.13830 * 27 26 25 48 48 H 1.09001 * 110.03145 * 95.75215 * 27 26 25 49 49 H 1.09001 * 110.03296 * 119.25729 * 28 27 26 50 50 H 1.09002 * 110.03141 * 240.64123 * 28 27 26 51 51 H 1.09000 * 110.48586 * 142.28645 * 29 28 27 52 52 H 1.08999 * 110.48624 * 264.93235 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4249 1.3186 6 6 1.9557 4.2239 2.3852 7 8 1.3395 3.8103 3.3456 8 6 2.4906 5.6174 2.3853 9 8 3.1072 6.0309 1.4249 10 7 2.2898 6.4163 3.4521 11 6 2.8628 7.6816 3.4902 12 6 3.3082 8.2059 4.7045 13 6 3.8766 9.4442 4.7487 14 6 4.0028 10.2001 3.5661 15 6 4.5837 11.4850 3.6049 16 1 4.2208 12.2618 2.9481 17 6 5.6305 11.7534 4.4947 18 7 6.0121 10.8401 5.3502 19 14 6.4824 13.4154 4.4608 20 1 5.4912 14.4854 4.7397 21 1 7.5480 13.4467 5.4946 22 1 7.0848 13.6355 3.1215 23 6 3.5457 9.6664 2.3447 24 6 2.9845 8.4244 2.3149 25 6 1.9955 -0.7659 -1.1376 26 6 3.5225 -0.9883 -0.9959 27 6 3.8016 -2.2441 -1.8471 28 6 2.4762 -3.0209 -1.9342 29 6 1.4369 -2.2106 -1.1322 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3634 0.5739 0.8524 32 1 -0.3634 0.4512 -0.9233 33 1 3.0797 1.3445 -0.1082 34 1 1.5610 1.9274 -0.8309 35 1 0.5471 2.0844 1.4266 36 1 2.0658 1.5015 2.1492 37 1 2.6497 3.7553 0.5512 38 1 1.7453 6.1080 4.1932 39 1 3.2061 7.6275 5.6108 40 1 4.2248 9.8469 5.6883 41 1 6.7376 11.0258 5.9666 42 1 3.6388 10.2403 1.4345 43 1 2.6333 8.0142 1.3796 44 1 1.7642 -0.2659 -2.0782 45 1 3.7866 -1.1674 0.0463 46 1 4.0714 -0.1320 -1.3878 47 1 4.5636 -2.8585 -1.3675 48 1 4.1302 -1.9534 -2.8449 49 1 2.1611 -3.1064 -2.9742 50 1 2.5952 -4.0126 -1.4977 51 1 0.4645 -2.2455 -1.6233 52 1 1.3640 -2.5876 -0.1121 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096410764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -49.295006 kcal Electronic energy + Delta-G solvation = -30546.098068 eV Core-core repulsion = 26316.887556 eV Total energy + Delta-G solvation = -4229.210512 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.56247 -39.53194 -38.70203 -37.19030 -36.50383 -34.96265 -34.21744 -32.93013 -30.11730 -29.66025 -29.28817 -29.00648 -27.97797 -26.18572 -25.19430 -23.56694 -22.04467 -21.46078 -20.82657 -20.54323 -20.31356 -19.71726 -18.28607 -17.37671 -17.10860 -16.59946 -16.16490 -16.06237 -15.99825 -15.34278 -15.19240 -15.07910 -14.71341 -14.38308 -14.03412 -13.90100 -13.71925 -13.60355 -13.39154 -12.94036 -12.73819 -12.62022 -12.38848 -12.21430 -12.02589 -11.81300 -11.77832 -11.47577 -11.38712 -11.37898 -11.27631 -11.23124 -11.17941 -11.12392 -11.02551 -10.82021 -10.76535 -10.01561 -9.54780 -9.50181 -9.33818 -9.14627 -8.95714 -8.81697 -7.61199 -6.95235 -6.67877 -4.40261 1.55930 2.44384 2.70597 3.04715 3.06894 3.08673 3.13921 3.43072 3.57358 3.93493 3.99221 4.07960 4.24447 4.44393 4.51222 4.64471 4.66412 4.79171 4.86219 4.92016 5.03307 5.05751 5.09356 5.16966 5.21645 5.26099 5.41536 5.49645 5.51927 5.58425 5.59041 5.61766 5.65491 5.75050 5.82461 5.93124 6.08938 6.15598 6.34954 6.56955 6.63278 6.64253 6.76713 6.98696 7.07637 7.12174 7.22825 7.57334 7.59841 7.68874 7.90113 8.00470 8.15216 8.24551 8.46196 8.59677 8.86049 8.92452 10.22721 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.001424 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.465711 B =19658.580546 C =20249.324621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.530 5.530 3 C 0.041 3.959 4 C 0.121 3.879 5 N -0.705 5.705 6 C 0.513 3.487 7 O -0.524 6.524 8 C 0.487 3.513 9 O -0.517 6.517 10 N -0.611 5.611 11 C -0.011 4.011 12 C -0.112 4.112 13 C -0.142 4.142 14 C 0.104 3.896 15 C -0.458 4.458 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.807 5.807 19 Si 0.917 3.083 20 H -0.265 1.265 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.207 4.207 24 C -0.080 4.080 25 C 0.077 3.923 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.116 4.116 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.408 0.592 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.280 0.720 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -23.381 -10.822 26.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.254 5.254 3 C -0.087 4.087 4 C -0.002 4.002 5 N -0.360 5.360 6 C 0.294 3.706 7 O -0.400 6.400 8 C 0.268 3.732 9 O -0.394 6.394 10 N -0.255 5.255 11 C -0.103 4.103 12 C -0.132 4.132 13 C -0.162 4.162 14 C 0.101 3.899 15 C -0.489 4.489 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.434 5.434 19 Si 0.742 3.258 20 H -0.190 1.190 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.227 4.227 24 C -0.100 4.100 25 C -0.032 4.032 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.162 4.162 29 C -0.154 4.154 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.249 0.751 38 H 0.243 0.757 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.126 0.874 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.977 -23.680 -10.178 26.703 hybrid contribution 0.224 0.993 -0.757 1.269 sum -6.753 -22.687 -10.935 26.074 Atomic orbital electron populations 1.22518 0.87077 1.02679 1.00899 1.61936 1.08070 1.12466 1.42940 1.22270 1.01402 0.88788 0.96241 1.21369 0.99611 0.80937 0.98332 1.45627 1.56916 1.13576 1.19846 1.20332 0.80364 0.86939 0.82968 1.90745 1.39853 1.75638 1.33766 1.19882 0.82487 0.85834 0.85007 1.90748 1.40354 1.74697 1.33551 1.42665 1.48331 1.14364 1.20099 1.17268 1.11993 0.85251 0.95773 1.20345 1.00875 0.97447 0.94537 1.21200 1.01058 0.94219 0.99735 1.17758 0.88618 0.93178 0.90325 1.19507 1.14752 0.96967 1.17650 0.90480 1.25919 0.96910 0.98367 0.93417 1.69731 1.24294 1.33737 1.15627 0.86220 0.79072 0.81644 0.78868 1.18980 1.20369 1.19041 1.20790 1.08925 0.95863 0.97162 1.20388 0.99614 0.93996 0.95995 1.22706 0.95332 0.93904 0.91210 1.22426 0.94344 0.97584 1.01201 1.22088 0.97530 0.96529 1.00054 1.22090 0.94955 0.98988 1.00134 1.22415 0.98029 0.93805 1.01161 0.90884 0.90813 0.95478 0.89605 0.93868 0.90991 0.90064 0.75142 0.75654 0.88753 0.84877 0.90914 0.88418 0.87422 0.93265 0.90291 0.91759 0.91581 0.91898 0.91952 0.91622 0.91889 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.08 60.06 0.55 0.65 16 2 N -0.53 -3.89 4.66 -232.43 -1.08 -4.97 16 3 C 0.04 0.31 4.97 -3.82 -0.02 0.29 16 4 C 0.12 1.16 5.61 -4.04 -0.02 1.14 16 5 N -0.71 -8.22 5.55 -60.79 -0.34 -8.56 16 6 C 0.51 7.75 7.88 -11.67 -0.09 7.66 16 7 O -0.52 -8.74 16.48 5.48 0.09 -8.65 16 8 C 0.49 8.72 7.71 -11.67 -0.09 8.63 16 9 O -0.52 -10.36 13.89 5.46 0.08 -10.28 16 10 N -0.61 -11.40 5.28 -10.20 -0.05 -11.46 16 11 C -0.01 -0.23 6.30 -83.64 -0.53 -0.76 16 12 C -0.11 -2.55 9.90 -39.78 -0.39 -2.95 16 13 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 14 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 15 C -0.46 -11.99 9.02 -37.86 -0.34 -12.33 16 16 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 17 C 0.07 1.73 5.42 -17.33 -0.09 1.64 16 18 N -0.81 -20.65 10.59 55.55 0.59 -20.06 16 19 Si 0.92 18.65 29.56 -169.99 -5.03 13.63 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.21 -5.13 9.74 -39.26 -0.38 -5.51 16 24 C -0.08 -1.88 8.61 -39.77 -0.34 -2.22 16 25 C 0.08 0.50 2.58 -65.68 -0.17 0.34 16 26 C -0.12 -0.75 5.50 -25.04 -0.14 -0.89 16 27 C -0.12 -0.68 6.80 -25.62 -0.17 -0.85 16 28 C -0.12 -0.64 6.80 -25.61 -0.17 -0.81 16 29 C -0.12 -0.66 4.99 -25.07 -0.12 -0.79 16 30 H 0.07 0.42 6.93 -51.93 -0.36 0.06 16 31 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 32 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.63 6.86 -51.93 -0.36 0.27 16 34 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 4.38 7.94 -40.82 -0.32 4.05 16 38 H 0.41 6.67 8.29 -40.82 -0.34 6.33 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 41 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 42 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 43 H 0.11 2.44 6.22 -52.49 -0.33 2.11 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.41 7.76 -51.93 -0.40 0.00 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 50 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.06 0.33 7.97 -51.93 -0.41 -0.09 16 52 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 416.95 15.07 6.28 6.28 Total: -1.00 -29.25 416.95 -11.06 -40.31 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.13 Total: 12.33 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.47 Total: -8.57 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.89 Total: -45.04 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.17 Total: -18.93 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.25 -11.06 -40.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.990 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds