Wall clock time and date at job start Tue Mar 31 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 110.99831 * 2 1 4 4 C 1.53002 * 109.47011 * 66.05127 * 3 2 1 5 5 N 1.46496 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99834 * 179.97438 * 5 4 3 7 7 O 1.21374 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.49270 * 120.00068 * 180.02562 * 6 5 4 9 9 O 1.21393 * 119.99763 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99960 * 180.02562 * 8 6 5 11 11 C 1.38953 * 119.99906 * 175.71387 * 10 8 6 12 12 C 1.39565 * 119.83938 * 215.04534 * 11 10 8 13 13 C 1.36326 * 120.16646 * 179.71918 * 12 11 10 14 14 C 1.40919 * 119.82629 * 0.57179 * 13 12 11 15 15 C 1.41071 * 120.15371 * 179.67948 * 14 13 12 16 16 H 1.08002 * 119.99635 * 214.80225 * 15 14 13 17 17 C 1.39978 * 120.00488 * 34.80359 * 15 14 13 18 18 N 1.30830 * 119.99597 * 355.56087 * 17 15 14 19 19 Si 1.86793 * 120.00483 * 175.56130 * 17 15 14 20 20 H 1.48498 * 109.46931 * 59.99933 * 19 17 15 21 21 H 1.48502 * 109.47384 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46974 * 299.99959 * 19 17 15 23 23 C 1.40910 * 119.68584 * 359.69801 * 14 13 12 24 24 C 1.36323 * 119.83587 * 0.02562 * 23 14 13 25 25 C 1.46902 * 111.00275 * 236.05001 * 2 1 3 26 26 C 1.54961 * 110.92784 * 190.49478 * 25 2 1 27 27 C 1.54257 * 104.16331 * 156.29408 * 26 25 2 28 28 C 1.53875 * 106.64045 * 336.44577 * 27 26 25 29 29 C 1.54264 * 106.59937 * 359.97376 * 28 27 26 30 30 H 1.09002 * 109.46911 * 183.95171 * 1 2 3 31 31 H 1.08999 * 109.47374 * 303.95275 * 1 2 3 32 32 H 1.09004 * 109.47326 * 63.95528 * 1 2 3 33 33 H 1.09005 * 109.47146 * 186.04558 * 3 2 1 34 34 H 1.09001 * 109.47287 * 306.04674 * 3 2 1 35 35 H 1.09005 * 109.46701 * 299.99704 * 4 3 2 36 36 H 1.09001 * 109.47464 * 59.99656 * 4 3 2 37 37 H 0.97001 * 120.00350 * 359.97438 * 5 4 3 38 38 H 0.96995 * 120.00492 * 355.71049 * 10 8 6 39 39 H 1.08000 * 119.91791 * 359.97438 * 12 11 10 40 40 H 1.07992 * 120.08798 * 180.26915 * 13 12 11 41 41 H 0.96996 * 119.99906 * 179.97438 * 18 17 15 42 42 H 1.08003 * 120.08504 * 179.97438 * 23 14 13 43 43 H 1.07999 * 119.92223 * 179.97438 * 24 23 14 44 44 H 1.09004 * 110.67199 * 67.18482 * 25 2 1 45 45 H 1.08994 * 110.47555 * 37.63714 * 26 25 2 46 46 H 1.09003 * 110.52702 * 274.97895 * 26 25 2 47 47 H 1.09002 * 110.03538 * 217.13830 * 27 26 25 48 48 H 1.09001 * 110.03145 * 95.75215 * 27 26 25 49 49 H 1.09001 * 110.03296 * 119.25729 * 28 27 26 50 50 H 1.09002 * 110.03141 * 240.64123 * 28 27 26 51 51 H 1.09000 * 110.48586 * 142.28645 * 29 28 27 52 52 H 1.08999 * 110.48624 * 264.93235 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4249 1.3186 6 6 1.9557 4.2239 2.3852 7 8 1.3395 3.8103 3.3456 8 6 2.4906 5.6174 2.3853 9 8 3.1072 6.0309 1.4249 10 7 2.2898 6.4163 3.4521 11 6 2.8628 7.6816 3.4902 12 6 3.3082 8.2059 4.7045 13 6 3.8766 9.4442 4.7487 14 6 4.0028 10.2001 3.5661 15 6 4.5837 11.4850 3.6049 16 1 4.2208 12.2618 2.9481 17 6 5.6305 11.7534 4.4947 18 7 6.0121 10.8401 5.3502 19 14 6.4824 13.4154 4.4608 20 1 5.4912 14.4854 4.7397 21 1 7.5480 13.4467 5.4946 22 1 7.0848 13.6355 3.1215 23 6 3.5457 9.6664 2.3447 24 6 2.9845 8.4244 2.3149 25 6 1.9955 -0.7659 -1.1376 26 6 3.5225 -0.9883 -0.9959 27 6 3.8016 -2.2441 -1.8471 28 6 2.4762 -3.0209 -1.9342 29 6 1.4369 -2.2106 -1.1322 30 1 -0.3633 -1.0253 0.0708 31 1 -0.3634 0.5739 0.8524 32 1 -0.3634 0.4512 -0.9233 33 1 3.0797 1.3445 -0.1082 34 1 1.5610 1.9274 -0.8309 35 1 0.5471 2.0844 1.4266 36 1 2.0658 1.5015 2.1492 37 1 2.6497 3.7553 0.5512 38 1 1.7453 6.1080 4.1932 39 1 3.2061 7.6275 5.6108 40 1 4.2248 9.8469 5.6883 41 1 6.7376 11.0258 5.9666 42 1 3.6388 10.2403 1.4345 43 1 2.6333 8.0142 1.3796 44 1 1.7642 -0.2659 -2.0782 45 1 3.7866 -1.1674 0.0463 46 1 4.0714 -0.1320 -1.3878 47 1 4.5636 -2.8585 -1.3675 48 1 4.1302 -1.9534 -2.8449 49 1 2.1611 -3.1064 -2.9742 50 1 2.5952 -4.0126 -1.4977 51 1 0.4645 -2.2455 -1.6233 52 1 1.3640 -2.5876 -0.1121 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096410764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:39 Heat of formation + Delta-G solvation = -67.345369 kcal Electronic energy + Delta-G solvation = -30546.880791 eV Core-core repulsion = 26316.887556 eV Total energy + Delta-G solvation = -4229.993235 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.94721 -40.37270 -39.86946 -38.90112 -37.25774 -36.38559 -35.39491 -34.66617 -31.53303 -31.04553 -30.70218 -29.76544 -28.50773 -27.55480 -26.29920 -24.87401 -23.33422 -22.75270 -22.41460 -21.35104 -20.94584 -20.75540 -19.67404 -19.24795 -18.29215 -17.65604 -17.28204 -17.13740 -17.01579 -16.76986 -16.33464 -15.99674 -15.76058 -15.42186 -15.36214 -15.11597 -14.85885 -14.51702 -14.39717 -14.21042 -14.04121 -13.98691 -13.63082 -13.28378 -13.17093 -13.02440 -12.92614 -12.89539 -12.71358 -12.61805 -12.41403 -12.32988 -11.83952 -11.81549 -11.74015 -11.72810 -11.63701 -11.42148 -11.25221 -11.23735 -10.82589 -10.59689 -10.35339 -9.50426 -9.37188 -8.81260 -8.52675 -6.35466 0.16454 0.90501 1.12672 1.28981 1.41170 1.51550 1.54163 2.13628 2.24190 2.54688 2.78603 3.02532 3.42608 3.57061 3.66175 3.76420 3.83857 3.95292 4.07241 4.33925 4.36387 4.42981 4.45380 4.48445 4.57367 4.58419 4.64308 4.72126 4.80827 4.81894 4.86905 4.88177 4.98316 5.03188 5.06152 5.09892 5.10711 5.10999 5.23527 5.27461 5.29483 5.31833 5.35665 5.50186 5.66615 5.76057 5.85388 6.00611 6.03280 6.09964 6.13338 6.34001 6.44639 6.64504 6.73270 6.91396 6.94047 7.07457 8.39651 Molecular weight = 359.20amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.001424 C = 0.001382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.465711 B =19658.580546 C =20249.324621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.538 5.538 3 C 0.048 3.952 4 C 0.124 3.876 5 N -0.687 5.687 6 C 0.522 3.478 7 O -0.539 6.539 8 C 0.490 3.510 9 O -0.537 6.537 10 N -0.611 5.611 11 C 0.003 3.997 12 C -0.112 4.112 13 C -0.160 4.160 14 C 0.073 3.927 15 C -0.494 4.494 16 H 0.077 0.923 17 C 0.029 3.971 18 N -0.837 5.837 19 Si 0.989 3.011 20 H -0.258 1.258 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.219 4.219 24 C -0.088 4.088 25 C 0.076 3.924 26 C -0.118 4.118 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.113 4.113 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.419 0.581 38 H 0.421 0.579 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.286 0.714 42 H 0.102 0.898 43 H 0.115 0.885 44 H 0.049 0.951 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 -24.746 -11.585 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.262 5.262 3 C -0.080 4.080 4 C 0.002 3.998 5 N -0.340 5.340 6 C 0.302 3.698 7 O -0.417 6.417 8 C 0.272 3.728 9 O -0.414 6.414 10 N -0.256 5.256 11 C -0.090 4.090 12 C -0.132 4.132 13 C -0.180 4.180 14 C 0.070 3.930 15 C -0.524 4.524 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.464 5.464 19 Si 0.810 3.190 20 H -0.182 1.182 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.239 4.239 24 C -0.108 4.108 25 C -0.032 4.032 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.160 4.160 29 C -0.151 4.151 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.257 0.743 38 H 0.259 0.741 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.133 0.867 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.244 -25.095 -10.965 28.328 hybrid contribution 0.222 1.217 -0.585 1.368 sum -7.021 -23.879 -11.550 27.439 Atomic orbital electron populations 1.22537 0.86578 1.03197 1.00864 1.61935 1.08600 1.12173 1.43503 1.22177 1.01698 0.89012 0.95107 1.21468 0.99574 0.79472 0.99331 1.45598 1.55675 1.13913 1.18835 1.19708 0.80578 0.85833 0.83713 1.90754 1.40858 1.75505 1.34534 1.20389 0.81541 0.86853 0.83997 1.90739 1.41039 1.75452 1.34219 1.42585 1.48622 1.13327 1.21077 1.17309 1.10307 0.86330 0.95091 1.20561 0.99854 0.96832 0.95944 1.21164 1.02331 0.95441 0.99039 1.18081 0.89693 0.94039 0.91173 1.19755 1.16249 0.97306 1.19127 0.90527 1.26774 0.96978 1.02095 0.92553 1.69799 1.24877 1.35562 1.16198 0.85141 0.78039 0.76880 0.78957 1.18223 1.19336 1.18845 1.20934 1.09339 0.96601 0.97042 1.20526 0.99702 0.93704 0.96839 1.22735 0.95405 0.94241 0.90812 1.22412 0.94334 0.98076 1.00734 1.22094 0.97843 0.96172 1.00071 1.22093 0.94504 0.99006 1.00441 1.22388 0.98521 0.93222 1.00953 0.90122 0.91153 0.95190 0.89261 0.93241 0.90717 0.90689 0.74313 0.74148 0.86041 0.86217 0.90320 0.87945 0.86686 0.93320 0.91322 0.91767 0.91443 0.91515 0.91352 0.91225 0.91233 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.08 127.69 1.16 1.34 16 2 N -0.54 -7.01 4.66 -889.29 -4.15 -11.16 16 3 C 0.05 0.65 4.97 86.30 0.43 1.07 16 4 C 0.12 2.16 5.61 86.38 0.48 2.64 16 5 N -0.69 -14.68 5.55 -464.58 -2.58 -17.26 16 6 C 0.52 14.85 7.88 87.21 0.69 15.53 16 7 O -0.54 -16.99 16.48 -3.32 -0.05 -17.05 16 8 C 0.49 16.85 7.71 87.21 0.67 17.52 16 9 O -0.54 -20.88 13.89 -3.38 -0.05 -20.93 16 10 N -0.61 -21.96 5.28 -304.52 -1.61 -23.57 16 11 C 0.00 0.13 6.30 38.66 0.24 0.37 16 12 C -0.11 -5.07 9.90 22.14 0.22 -4.86 16 13 C -0.16 -8.28 8.61 22.48 0.19 -8.08 16 14 C 0.07 3.93 5.55 -21.27 -0.12 3.81 16 15 C -0.49 -26.57 9.02 23.39 0.21 -26.36 16 16 H 0.08 3.95 7.85 -2.91 -0.02 3.93 16 17 C 0.03 1.45 5.42 85.26 0.46 1.91 16 18 N -0.84 -43.59 10.59 21.83 0.23 -43.35 16 19 Si 0.99 38.34 29.56 68.60 2.03 40.37 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 23 C -0.22 -11.06 9.74 22.48 0.22 -10.84 16 24 C -0.09 -4.11 8.61 22.15 0.19 -3.92 16 25 C 0.08 0.88 2.58 46.23 0.12 1.00 16 26 C -0.12 -1.36 5.50 31.69 0.17 -1.19 16 27 C -0.12 -1.18 6.80 31.32 0.21 -0.97 16 28 C -0.12 -1.05 6.80 31.32 0.21 -0.84 16 29 C -0.11 -1.11 4.99 31.67 0.16 -0.95 16 30 H 0.08 0.79 6.93 -2.39 -0.02 0.77 16 31 H 0.07 0.84 6.30 -2.39 -0.02 0.83 16 32 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 1.15 6.86 -2.38 -0.02 1.13 16 34 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.07 1.32 6.47 -2.38 -0.02 1.30 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 8.05 7.94 -92.71 -0.74 7.31 16 38 H 0.42 13.04 8.29 -92.71 -0.77 12.27 16 39 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.12 6.47 6.13 -2.91 -0.02 6.45 16 41 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 42 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.12 5.16 6.22 -2.91 -0.02 5.14 16 44 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.73 7.76 -2.39 -0.02 0.71 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.07 0.59 7.97 -2.39 -0.02 0.57 16 52 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -62.80 416.95 -0.80 -63.60 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.55 Total: 42.16 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 5.93 Total: -12.81 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -8.10 Total: -95.34 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.10 Total: -37.98 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -62.80 -0.80 -63.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.750 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds