Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45195 * 109.47636 * 2 1 4 4 C 1.34224 * 117.00674 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00609 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47320 * 179.97438 * 6 4 3 8 8 C 1.34781 * 119.99514 * 89.99860 * 7 6 4 9 9 O 1.21556 * 119.99744 * 43.87456 * 8 7 6 10 10 C 1.47884 * 120.00024 * 223.86141 * 8 7 6 11 11 C 1.39915 * 120.02917 * 329.46984 * 10 8 7 12 12 C 1.38322 * 120.36243 * 180.23263 * 11 10 8 13 13 C 1.37756 * 120.40841 * 359.48663 * 12 11 10 14 14 C 1.40753 * 120.04007 * 0.27932 * 13 12 11 15 15 C 1.41439 * 120.17596 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00056 * 29.50764 * 15 14 13 17 17 C 1.39933 * 119.99662 * 209.50125 * 15 14 13 18 18 N 1.30821 * 120.00450 * 11.23031 * 17 15 14 19 19 Si 1.86803 * 119.99554 * 191.23095 * 17 15 14 20 20 H 1.48500 * 109.47585 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47471 * 120.00270 * 19 17 15 22 22 H 1.48502 * 109.47180 * 239.99958 * 19 17 15 23 23 C 1.38997 * 120.02231 * 149.21357 * 10 8 7 24 24 C 1.46495 * 120.00229 * 270.00211 * 7 6 4 25 25 C 1.52998 * 109.47121 * 212.30702 * 24 7 6 26 26 C 1.52997 * 109.47554 * 179.97438 * 25 24 7 27 27 C 1.53006 * 109.46917 * 59.99661 * 26 25 24 28 28 C 1.52998 * 109.47285 * 300.00504 * 27 26 25 29 29 C 1.52995 * 109.47227 * 59.99709 * 28 27 26 30 30 H 1.09000 * 109.46888 * 300.00359 * 1 2 3 31 31 H 1.09004 * 109.46798 * 60.00031 * 1 2 3 32 32 H 1.08993 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47234 * 240.00054 * 2 1 3 34 34 H 1.09005 * 109.47170 * 120.00357 * 2 1 3 35 35 H 1.09005 * 109.46609 * 59.99962 * 6 4 3 36 36 H 1.08994 * 109.46737 * 300.00090 * 6 4 3 37 37 H 1.08004 * 119.82033 * 0.02562 * 11 10 8 38 38 H 1.07997 * 119.79791 * 179.76818 * 12 11 10 39 39 H 1.08004 * 119.98015 * 180.25372 * 13 12 11 40 40 H 0.96998 * 119.99982 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.20368 * 0.04912 * 23 10 8 42 42 H 1.08998 * 109.47051 * 332.30378 * 24 7 6 43 43 H 1.08998 * 109.47393 * 299.99944 * 25 24 7 44 44 H 1.09002 * 109.47490 * 59.99567 * 25 24 7 45 45 H 1.09001 * 109.47294 * 300.00517 * 26 25 24 46 46 H 1.08993 * 109.47530 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47134 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.46777 * 60.00723 * 27 26 25 49 49 H 1.09001 * 109.46742 * 299.99509 * 28 27 26 50 50 H 1.09000 * 109.46796 * 179.97438 * 28 27 26 51 51 H 1.09002 * 109.47152 * 179.97438 * 29 28 27 52 52 H 1.09001 * 109.47423 * 60.00216 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.0568 2.8247 -1.1683 9 8 5.7421 3.5714 -2.0744 10 6 7.1781 1.8772 -1.3465 11 6 7.9562 1.4985 -0.2471 12 6 9.0097 0.6164 -0.4068 13 6 9.2984 0.0924 -1.6477 14 6 8.5237 0.4580 -2.7645 15 6 8.8179 -0.0778 -4.0400 16 1 9.2620 -1.0586 -4.1244 17 6 8.5335 0.6630 -5.1926 18 7 8.2043 1.9253 -5.0943 19 14 8.6238 -0.1507 -6.8717 20 1 9.0149 -1.5743 -6.7116 21 1 7.2955 -0.0740 -7.5311 22 1 9.6324 0.5492 -7.7073 23 6 7.4564 1.3580 -2.6055 24 6 6.1153 2.8228 1.2677 25 6 7.4647 3.5239 1.0995 26 6 8.2284 3.4850 2.4246 27 6 8.4578 2.0300 2.8385 28 6 7.1083 1.3288 3.0067 29 6 6.3447 1.3678 1.6816 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5852 3.4697 0.8889 36 1 3.5846 3.4692 -0.8911 37 1 7.7353 1.8996 0.7310 38 1 9.6067 0.3331 0.4474 39 1 10.1200 -0.5989 -1.7637 40 1 8.0075 2.4388 -5.8933 41 1 6.8563 1.6450 -3.4564 42 1 5.5348 3.3318 2.0370 43 1 8.0453 3.0149 0.3301 44 1 7.3014 4.5606 0.8050 45 1 7.6477 3.9943 3.1938 46 1 9.1899 3.9841 2.3047 47 1 9.0015 2.0023 3.7828 48 1 9.0385 1.5207 2.0695 49 1 6.5277 1.8382 3.7759 50 1 7.2718 0.2922 3.3012 51 1 5.3835 0.8679 1.8013 52 1 6.9253 0.8585 0.9124 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096412060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = -18.877408 kcal Electronic energy + Delta-G solvation = -34562.096319 eV Core-core repulsion = 30301.912062 eV Total energy + Delta-G solvation = -4260.184257 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.36547 -40.10238 -38.03934 -37.07232 -36.44029 -34.52519 -33.64250 -31.93444 -30.97794 -30.47391 -29.50555 -29.42452 -27.47256 -25.58062 -23.61447 -22.95496 -22.36123 -21.86949 -21.52763 -20.77641 -19.74111 -18.29339 -17.71034 -17.40617 -16.67675 -16.50669 -16.00349 -15.75939 -15.48134 -15.05616 -14.45171 -14.31829 -14.21518 -14.07553 -13.79666 -13.62803 -13.16694 -13.15270 -12.89192 -12.65333 -12.55181 -12.48662 -12.25191 -12.06327 -11.97597 -11.73563 -11.69611 -11.66062 -11.38297 -11.18382 -11.12013 -10.87896 -10.63843 -10.53473 -10.47493 -10.30322 -10.16194 -10.06558 -9.89258 -9.75766 -9.20105 -9.15634 -8.50938 -8.23476 -7.54782 -7.25747 -6.70053 -4.36614 2.10874 2.36478 2.56570 2.81698 3.09839 3.12792 3.14807 3.37964 3.56175 3.95852 4.62231 4.73403 4.79980 4.83179 4.90517 4.93651 4.96626 5.13467 5.17021 5.27187 5.35228 5.43794 5.46030 5.56239 5.56881 5.63436 5.66643 5.68525 5.75372 5.79853 5.82812 5.94927 6.06321 6.16141 6.19378 6.24622 6.39778 6.48238 6.51992 6.58548 6.71300 6.73866 6.83874 6.99505 7.04430 7.16302 7.25995 7.42051 7.65995 7.77095 7.83965 7.92658 8.00634 8.20308 8.54018 8.63861 8.86085 8.88266 10.24279 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.007759 B = 0.004303 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.718727 B = 6505.450821 C = 8736.651603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.365 6.365 4 C 0.428 3.572 5 O -0.477 6.477 6 C 0.137 3.863 7 N -0.636 5.636 8 C 0.593 3.407 9 O -0.512 6.512 10 C -0.132 4.132 11 C -0.278 4.278 12 C -0.109 4.109 13 C -0.203 4.203 14 C 0.100 3.900 15 C -0.464 4.464 16 H 0.079 0.921 17 C 0.071 3.929 18 N -0.794 5.794 19 Si 0.910 3.090 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.087 4.087 24 C 0.165 3.835 25 C -0.215 4.215 26 C -0.107 4.107 27 C -0.134 4.134 28 C -0.114 4.114 29 C -0.196 4.196 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.194 0.806 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.282 0.718 41 H 0.127 0.873 42 H 0.076 0.924 43 H 0.153 0.847 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 0.921 14.010 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.282 6.282 4 C 0.268 3.732 5 O -0.362 6.362 6 C 0.011 3.989 7 N -0.372 5.372 8 C 0.387 3.613 9 O -0.386 6.386 10 C -0.135 4.135 11 C -0.295 4.295 12 C -0.127 4.127 13 C -0.223 4.223 14 C 0.097 3.903 15 C -0.493 4.493 16 H 0.097 0.903 17 C -0.146 4.146 18 N -0.419 5.419 19 Si 0.734 3.266 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.107 4.107 24 C 0.062 3.938 25 C -0.251 4.251 26 C -0.145 4.145 27 C -0.172 4.172 28 C -0.152 4.152 29 C -0.233 4.233 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.210 0.790 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.144 0.856 42 H 0.094 0.906 43 H 0.170 0.830 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.084 0.916 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.192 1.234 13.311 16.223 hybrid contribution -0.100 -0.543 -0.729 0.915 sum -9.292 0.691 12.581 15.656 Atomic orbital electron populations 1.21791 0.92852 1.02789 1.03352 1.22971 0.95074 0.80590 1.02640 1.86481 1.24934 1.32199 1.84573 1.24870 0.80572 0.94293 0.73504 1.90735 1.59934 1.42600 1.42925 1.20680 0.81858 0.89879 1.06493 1.47250 1.03279 1.80115 1.06559 1.18943 0.82095 0.80328 0.79970 1.90688 1.67597 1.37711 1.42573 1.19574 0.97448 1.00883 0.95616 1.22901 1.00740 1.05047 1.00830 1.20514 0.97624 0.98348 0.96210 1.21200 1.01424 1.06052 0.93640 1.17559 0.89332 0.90633 0.92752 1.19583 1.36711 1.03068 0.89979 0.90260 1.25916 0.92760 0.94406 1.01543 1.69778 1.33466 1.06925 1.31722 0.86234 0.78678 0.80436 0.81213 1.18482 1.19785 1.19929 1.21547 0.96997 0.98258 0.93881 1.20974 0.92597 0.96329 0.83913 1.23594 0.97242 1.02129 1.02126 1.21400 1.00070 0.96765 0.96287 1.21740 0.97736 0.96027 1.01674 1.21492 0.95999 1.00317 0.97366 1.23385 1.02894 0.97346 0.99710 0.91641 0.91505 0.90420 0.91227 0.91408 0.86918 0.86205 0.78989 0.88873 0.88764 0.90711 0.85551 0.90633 0.83022 0.91932 0.92525 0.91575 0.92169 0.90517 0.92843 0.91958 0.91640 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.36 -4.86 10.22 -39.24 -0.40 -5.27 16 4 C 0.43 6.62 8.00 36.01 0.29 6.91 16 5 O -0.48 -8.95 13.81 -18.75 -0.26 -9.21 16 6 C 0.14 1.93 6.25 -5.19 -0.03 1.90 16 7 N -0.64 -10.95 1.96 -168.57 -0.33 -11.28 16 8 C 0.59 13.05 5.93 -12.31 -0.07 12.98 16 9 O -0.51 -12.66 16.85 5.32 0.09 -12.57 16 10 C -0.13 -3.13 5.56 -105.04 -0.58 -3.71 16 11 C -0.28 -5.74 3.60 -38.92 -0.14 -5.88 16 12 C -0.11 -2.29 9.61 -39.73 -0.38 -2.67 16 13 C -0.20 -4.86 9.78 -38.81 -0.38 -5.24 16 14 C 0.10 2.66 5.54 -106.87 -0.59 2.07 16 15 C -0.46 -12.41 9.06 -37.73 -0.34 -12.75 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 17 C 0.07 1.83 5.24 -17.35 -0.09 1.74 16 18 N -0.79 -21.43 10.92 55.55 0.61 -20.82 16 19 Si 0.91 19.22 29.57 -169.99 -5.03 14.19 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C -0.09 -2.34 8.20 -38.44 -0.32 -2.65 16 24 C 0.16 2.43 2.47 -67.93 -0.17 2.27 16 25 C -0.21 -3.25 4.32 -26.73 -0.12 -3.36 16 26 C -0.11 -1.29 5.92 -26.73 -0.16 -1.45 16 27 C -0.13 -1.60 5.66 -26.73 -0.15 -1.75 16 28 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 29 C -0.20 -2.98 4.46 -26.73 -0.12 -3.10 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 34 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 35 H 0.11 1.13 7.87 -51.93 -0.41 0.72 16 36 H 0.12 1.70 7.54 -51.93 -0.39 1.31 16 37 H 0.19 3.32 0.08 -82.36 -0.01 3.32 16 38 H 0.09 1.66 7.19 -52.49 -0.38 1.28 16 39 H 0.09 2.11 8.06 -52.48 -0.42 1.68 16 40 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 41 H 0.13 3.70 6.16 -52.48 -0.32 3.37 16 42 H 0.08 0.92 7.86 -51.93 -0.41 0.52 16 43 H 0.15 2.78 3.08 -94.34 -0.29 2.49 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 1.03 5.66 -51.93 -0.29 0.73 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 1.05 6.40 -51.93 -0.33 0.71 16 52 H 0.14 2.56 3.63 -79.95 -0.29 2.27 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -31.36 395.90 -10.00 -41.36 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.74 Total: 13.79 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.90 Total: -16.16 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.28 Total: -32.11 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.57 Total: -27.05 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.36 -10.00 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096412060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.486 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds