Wall clock time and date at job start Tue Mar 31 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45195 * 109.47636 * 2 1 4 4 C 1.34224 * 117.00674 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99853 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00609 * 179.97438 * 4 3 2 7 7 N 1.46497 * 109.47320 * 179.97438 * 6 4 3 8 8 C 1.34781 * 119.99514 * 89.99860 * 7 6 4 9 9 O 1.21556 * 119.99744 * 43.87456 * 8 7 6 10 10 C 1.47884 * 120.00024 * 223.86141 * 8 7 6 11 11 C 1.39915 * 120.02917 * 329.46984 * 10 8 7 12 12 C 1.38322 * 120.36243 * 180.23263 * 11 10 8 13 13 C 1.37756 * 120.40841 * 359.48663 * 12 11 10 14 14 C 1.40753 * 120.04007 * 0.27932 * 13 12 11 15 15 C 1.41439 * 120.17596 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00056 * 29.50764 * 15 14 13 17 17 C 1.39933 * 119.99662 * 209.50125 * 15 14 13 18 18 N 1.30821 * 120.00450 * 11.23031 * 17 15 14 19 19 Si 1.86803 * 119.99554 * 191.23095 * 17 15 14 20 20 H 1.48500 * 109.47585 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47471 * 120.00270 * 19 17 15 22 22 H 1.48502 * 109.47180 * 239.99958 * 19 17 15 23 23 C 1.38997 * 120.02231 * 149.21357 * 10 8 7 24 24 C 1.46495 * 120.00229 * 270.00211 * 7 6 4 25 25 C 1.52998 * 109.47121 * 212.30702 * 24 7 6 26 26 C 1.52997 * 109.47554 * 179.97438 * 25 24 7 27 27 C 1.53006 * 109.46917 * 59.99661 * 26 25 24 28 28 C 1.52998 * 109.47285 * 300.00504 * 27 26 25 29 29 C 1.52995 * 109.47227 * 59.99709 * 28 27 26 30 30 H 1.09000 * 109.46888 * 300.00359 * 1 2 3 31 31 H 1.09004 * 109.46798 * 60.00031 * 1 2 3 32 32 H 1.08993 * 109.47139 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47234 * 240.00054 * 2 1 3 34 34 H 1.09005 * 109.47170 * 120.00357 * 2 1 3 35 35 H 1.09005 * 109.46609 * 59.99962 * 6 4 3 36 36 H 1.08994 * 109.46737 * 300.00090 * 6 4 3 37 37 H 1.08004 * 119.82033 * 0.02562 * 11 10 8 38 38 H 1.07997 * 119.79791 * 179.76818 * 12 11 10 39 39 H 1.08004 * 119.98015 * 180.25372 * 13 12 11 40 40 H 0.96998 * 119.99982 * 179.97438 * 18 17 15 41 41 H 1.08004 * 120.20368 * 0.04912 * 23 10 8 42 42 H 1.08998 * 109.47051 * 332.30378 * 24 7 6 43 43 H 1.08998 * 109.47393 * 299.99944 * 25 24 7 44 44 H 1.09002 * 109.47490 * 59.99567 * 25 24 7 45 45 H 1.09001 * 109.47294 * 300.00517 * 26 25 24 46 46 H 1.08993 * 109.47530 * 179.97438 * 26 25 24 47 47 H 1.09001 * 109.47134 * 180.02562 * 27 26 25 48 48 H 1.08998 * 109.46777 * 60.00723 * 27 26 25 49 49 H 1.09001 * 109.46742 * 299.99509 * 28 27 26 50 50 H 1.09000 * 109.46796 * 179.97438 * 28 27 26 51 51 H 1.09002 * 109.47152 * 179.97438 * 29 28 27 52 52 H 1.09001 * 109.47423 * 60.00216 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9373 -0.0012 7 7 5.3838 2.8606 -0.0010 8 6 6.0568 2.8247 -1.1683 9 8 5.7421 3.5714 -2.0744 10 6 7.1781 1.8772 -1.3465 11 6 7.9562 1.4985 -0.2471 12 6 9.0097 0.6164 -0.4068 13 6 9.2984 0.0924 -1.6477 14 6 8.5237 0.4580 -2.7645 15 6 8.8179 -0.0778 -4.0400 16 1 9.2620 -1.0586 -4.1244 17 6 8.5335 0.6630 -5.1926 18 7 8.2043 1.9253 -5.0943 19 14 8.6238 -0.1507 -6.8717 20 1 9.0149 -1.5743 -6.7116 21 1 7.2955 -0.0740 -7.5311 22 1 9.6324 0.5492 -7.7073 23 6 7.4564 1.3580 -2.6055 24 6 6.1153 2.8228 1.2677 25 6 7.4647 3.5239 1.0995 26 6 8.2284 3.4850 2.4246 27 6 8.4578 2.0300 2.8385 28 6 7.1083 1.3288 3.0067 29 6 6.3447 1.3678 1.6816 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5852 3.4697 0.8889 36 1 3.5846 3.4692 -0.8911 37 1 7.7353 1.8996 0.7310 38 1 9.6067 0.3331 0.4474 39 1 10.1200 -0.5989 -1.7637 40 1 8.0075 2.4388 -5.8933 41 1 6.8563 1.6450 -3.4564 42 1 5.5348 3.3318 2.0370 43 1 8.0453 3.0149 0.3301 44 1 7.3014 4.5606 0.8050 45 1 7.6477 3.9943 3.1938 46 1 9.1899 3.9841 2.3047 47 1 9.0015 2.0023 3.7828 48 1 9.0385 1.5207 2.0695 49 1 6.5277 1.8382 3.7759 50 1 7.2718 0.2922 3.3012 51 1 5.3835 0.8679 1.8013 52 1 6.9253 0.8585 0.9124 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096412060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:27 Heat of formation + Delta-G solvation = -35.321303 kcal Electronic energy + Delta-G solvation = -34562.809380 eV Core-core repulsion = 30301.912062 eV Total energy + Delta-G solvation = -4260.897318 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.78630 -41.33020 -39.57973 -38.79172 -37.70581 -35.91027 -35.49797 -32.91565 -32.39781 -31.63357 -31.32599 -30.83728 -28.78808 -27.45990 -24.92616 -24.05534 -23.51483 -23.38393 -22.96890 -22.16122 -21.11067 -19.94634 -19.14455 -18.79743 -18.06325 -17.82066 -17.52673 -17.13037 -16.84267 -16.70619 -16.15438 -15.60019 -15.42283 -15.26839 -15.17062 -15.02677 -14.73975 -14.38163 -14.30776 -14.19310 -13.75798 -13.63667 -13.46585 -13.42976 -13.23617 -13.09121 -12.92902 -12.84098 -12.75830 -12.67555 -12.53025 -12.40615 -12.01897 -11.89291 -11.79830 -11.72332 -11.54757 -11.47277 -11.33358 -11.08260 -11.01317 -10.84946 -9.97398 -9.71132 -9.37320 -9.10873 -8.60451 -6.37528 0.30826 0.98193 1.13917 1.29120 1.32699 1.43775 1.48756 1.85910 2.07886 2.18004 2.73890 3.56699 3.64347 3.68255 3.78108 3.83518 3.96972 4.07497 4.09675 4.14948 4.25799 4.29563 4.32302 4.32663 4.38540 4.45994 4.57401 4.63936 4.69960 4.79870 4.81385 4.86728 4.90660 5.01327 5.06484 5.09820 5.11689 5.21367 5.23217 5.28323 5.36895 5.40043 5.42488 5.45288 5.51857 5.53174 5.59479 5.76251 5.91390 5.93418 6.02952 6.22867 6.31042 6.59307 6.71385 6.88980 6.93893 6.97686 8.35883 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.007759 B = 0.004303 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.718727 B = 6505.450821 C = 8736.651603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.431 3.569 5 O -0.518 6.518 6 C 0.130 3.870 7 N -0.629 5.629 8 C 0.594 3.406 9 O -0.553 6.553 10 C -0.152 4.152 11 C -0.241 4.241 12 C -0.116 4.116 13 C -0.208 4.208 14 C 0.063 3.937 15 C -0.503 4.503 16 H 0.079 0.921 17 C 0.026 3.974 18 N -0.838 5.838 19 Si 0.984 3.016 20 H -0.253 1.253 21 H -0.271 1.271 22 H -0.263 1.263 23 C -0.123 4.123 24 C 0.156 3.844 25 C -0.215 4.215 26 C -0.102 4.102 27 C -0.137 4.137 28 C -0.109 4.109 29 C -0.192 4.192 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.168 0.832 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.135 0.865 39 H 0.105 0.895 40 H 0.283 0.717 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.056 0.944 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.060 0.940 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 1.336 18.151 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.273 3.727 5 O -0.406 6.406 6 C 0.006 3.994 7 N -0.364 5.364 8 C 0.387 3.613 9 O -0.430 6.430 10 C -0.155 4.155 11 C -0.258 4.258 12 C -0.133 4.133 13 C -0.227 4.227 14 C 0.061 3.939 15 C -0.534 4.534 16 H 0.097 0.903 17 C -0.187 4.187 18 N -0.465 5.465 19 Si 0.804 3.196 20 H -0.177 1.177 21 H -0.196 1.196 22 H -0.188 1.188 23 C -0.143 4.143 24 C 0.055 3.945 25 C -0.252 4.252 26 C -0.140 4.140 27 C -0.174 4.174 28 C -0.147 4.147 29 C -0.229 4.229 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.185 0.815 36 H 0.135 0.865 37 H 0.251 0.749 38 H 0.153 0.847 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.108 0.892 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.097 1.639 17.507 20.276 hybrid contribution 0.080 -0.653 -1.720 1.841 sum -10.016 0.987 15.787 18.723 Atomic orbital electron populations 1.21804 0.89920 1.04326 1.03894 1.23245 0.97329 0.79475 1.02018 1.86482 1.23632 1.33452 1.83916 1.25083 0.81017 0.94284 0.72342 1.90731 1.60913 1.43906 1.45021 1.21060 0.79743 0.89606 1.08985 1.47244 1.04741 1.78623 1.05781 1.18772 0.81864 0.79606 0.81024 1.90658 1.68670 1.39245 1.44428 1.19957 0.98904 1.01285 0.95387 1.23665 0.98271 1.02175 1.01686 1.20989 0.98106 0.97733 0.96508 1.21497 1.01236 1.05928 0.94080 1.17877 0.90210 0.91792 0.94012 1.19822 1.38893 1.03572 0.91084 0.90274 1.26810 0.91862 0.94654 1.05347 1.69901 1.35388 1.08494 1.32677 0.85138 0.78777 0.79590 0.76057 1.17651 1.19556 1.18789 1.21334 0.97931 1.00748 0.94316 1.21368 0.93006 0.96610 0.83529 1.23459 0.97258 1.01556 1.02923 1.21430 1.00381 0.97368 0.94852 1.21785 0.97593 0.95478 1.02573 1.21498 0.95971 1.01316 0.95875 1.23181 1.02477 0.96890 1.00366 0.90390 0.91607 0.88395 0.93023 0.90998 0.81465 0.86511 0.74923 0.84706 0.87638 0.90628 0.89233 0.86021 0.87031 0.91980 0.89472 0.90941 0.89248 0.92490 0.89899 0.91439 0.92174 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.29 71.98 0.74 -1.28 16 2 C 0.05 1.17 6.19 71.98 0.45 1.61 16 3 O -0.36 -9.14 10.22 -51.36 -0.52 -9.67 16 4 C 0.43 13.02 8.00 71.24 0.57 13.59 16 5 O -0.52 -19.64 13.81 21.95 0.30 -19.33 16 6 C 0.13 3.45 6.25 85.63 0.54 3.98 16 7 N -0.63 -21.05 1.96 -805.49 -1.58 -22.63 16 8 C 0.59 27.16 5.93 86.80 0.51 27.67 16 9 O -0.55 -29.00 16.85 -3.89 -0.07 -29.07 16 10 C -0.15 -7.61 5.56 -20.13 -0.11 -7.72 16 11 C -0.24 -10.07 3.60 22.70 0.08 -9.99 16 12 C -0.12 -4.88 9.61 22.18 0.21 -4.66 16 13 C -0.21 -10.31 9.78 22.77 0.22 -10.09 16 14 C 0.06 3.62 5.54 -21.32 -0.12 3.50 16 15 C -0.50 -28.94 9.06 23.47 0.21 -28.73 16 16 H 0.08 4.33 7.87 -2.91 -0.02 4.30 16 17 C 0.03 1.43 5.24 85.25 0.45 1.87 16 18 N -0.84 -49.00 10.92 21.82 0.24 -48.77 16 19 Si 0.98 41.70 29.57 68.60 2.03 43.73 16 20 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.12 -7.19 8.20 23.01 0.19 -7.00 16 24 C 0.16 4.12 2.47 44.99 0.11 4.23 16 25 C -0.22 -5.95 4.32 30.59 0.13 -5.82 16 26 C -0.10 -1.98 5.92 30.60 0.18 -1.80 16 27 C -0.14 -2.62 5.66 30.60 0.17 -2.44 16 28 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 29 C -0.19 -5.30 4.46 30.59 0.14 -5.16 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 34 H 0.07 1.52 8.13 -2.38 -0.02 1.50 16 35 H 0.17 2.58 7.87 -2.38 -0.02 2.56 16 36 H 0.12 3.24 7.54 -2.39 -0.02 3.23 16 37 H 0.24 7.73 0.08 -30.97 0.00 7.72 16 38 H 0.14 4.52 7.19 -2.91 -0.02 4.50 16 39 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.28 15.26 8.30 -92.71 -0.77 14.49 16 41 H 0.09 5.82 6.16 -2.91 -0.02 5.80 16 42 H 0.12 2.23 7.86 -2.39 -0.02 2.21 16 43 H 0.11 3.99 3.08 -42.22 -0.13 3.86 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.06 1.32 5.66 -2.39 -0.01 1.30 16 49 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.06 1.77 6.40 -2.39 -0.02 1.76 16 52 H 0.10 3.55 3.63 -28.71 -0.10 3.45 16 Total: -1.00 -78.14 395.90 5.99 -72.15 By element: Atomic # 1 Polarization: 43.02 SS G_CDS: 0.73 Total: 43.76 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.86 Total: -30.17 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.34 Total: -71.40 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -0.29 Total: -58.07 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -78.14 5.99 -72.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096412060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.827 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds