Wall clock time and date at job start Tue Mar 31 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46566 * 2 1 4 4 C 1.50701 * 109.47066 * 239.99587 * 2 1 3 5 5 C 1.38670 * 120.41720 * 99.99718 * 4 2 1 6 6 C 1.38631 * 118.41644 * 180.02562 * 5 4 2 7 7 C 1.38224 * 119.16434 * 0.02562 * 6 5 4 8 8 N 1.31854 * 120.76243 * 0.02562 * 7 6 5 9 9 C 1.31896 * 121.72742 * 359.70049 * 8 7 6 10 10 N 1.46896 * 109.47090 * 119.99412 * 2 1 3 11 11 C 1.46962 * 111.00245 * 295.00138 * 10 2 1 12 12 C 1.53052 * 109.36446 * 176.81169 * 11 10 2 13 13 N 1.46958 * 109.36418 * 58.40080 * 12 11 10 14 14 C 1.46900 * 111.00173 * 176.80986 * 13 12 11 15 15 H 1.08997 * 109.46859 * 56.21122 * 14 13 12 16 16 C 1.52997 * 109.47315 * 176.21666 * 14 13 12 17 17 C 1.50702 * 109.46954 * 296.21638 * 14 13 12 18 18 O 1.21279 * 120.00289 * 335.48202 * 17 14 13 19 19 N 1.34777 * 119.99966 * 155.47606 * 17 14 13 20 20 C 1.46500 * 120.00088 * 359.97438 * 19 17 14 21 21 C 1.46498 * 120.00155 * 179.97438 * 19 17 14 22 22 C 1.50704 * 109.47244 * 90.00188 * 21 19 17 23 23 H 1.08003 * 119.99787 * 359.97438 * 22 21 19 24 24 C 1.37872 * 120.00281 * 179.97438 * 22 21 19 25 25 N 1.31515 * 119.99949 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00016 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47341 * 89.99765 * 26 24 22 28 28 H 1.48495 * 109.47183 * 209.99980 * 26 24 22 29 29 H 1.48501 * 109.46669 * 329.99607 * 26 24 22 30 30 C 1.46953 * 110.88247 * 300.68102 * 13 12 11 31 31 C 1.46957 * 111.00203 * 171.19981 * 10 2 1 32 32 H 1.09003 * 109.47273 * 300.00377 * 1 2 3 33 33 H 1.08993 * 109.47564 * 60.00420 * 1 2 3 34 34 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 35 35 H 1.07997 * 120.78970 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.41330 * 180.02562 * 6 5 4 37 37 H 1.07993 * 119.62077 * 179.97438 * 7 6 5 38 38 H 1.07993 * 119.61681 * 180.31106 * 9 8 7 39 39 H 1.08993 * 109.48946 * 56.84198 * 11 10 2 40 40 H 1.09001 * 109.50316 * 296.78903 * 11 10 2 41 41 H 1.09000 * 109.48452 * 178.36592 * 12 11 10 42 42 H 1.08995 * 109.49131 * 298.43348 * 12 11 10 43 43 H 1.09002 * 109.46973 * 60.00255 * 16 14 13 44 44 H 1.09004 * 109.47196 * 179.97438 * 16 14 13 45 45 H 1.08995 * 109.47298 * 300.00388 * 16 14 13 46 46 H 1.09000 * 109.47019 * 90.00147 * 20 19 17 47 47 H 1.09002 * 109.47597 * 210.00292 * 20 19 17 48 48 H 1.09007 * 109.47053 * 329.99965 * 20 19 17 49 49 H 1.09002 * 109.47512 * 210.00004 * 21 19 17 50 50 H 1.08998 * 109.46966 * 330.00385 * 21 19 17 51 51 H 0.97002 * 119.99654 * 179.97438 * 25 24 22 52 52 H 1.09005 * 109.48716 * 299.35375 * 30 13 12 53 53 H 1.09003 * 109.49134 * 179.29108 * 30 13 12 54 54 H 1.09003 * 109.48811 * 303.15935 * 31 10 2 55 55 H 1.09009 * 109.48401 * 63.21969 * 31 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.4621 0.0130 -2.3326 6 6 2.9155 -0.6829 -3.4426 7 6 2.9236 -2.0648 -3.4142 8 7 2.5064 -2.7199 -2.3487 9 6 2.0735 -2.0910 -1.2732 10 7 2.0197 -0.6924 1.1995 11 6 1.6486 0.0397 2.4186 12 6 2.1063 -0.7526 3.6454 13 7 3.5601 -0.9567 3.5791 14 6 4.0499 -1.6490 4.7786 15 1 3.5153 -2.5914 4.8978 16 6 5.5472 -1.9270 4.6315 17 6 3.8164 -0.7825 5.9893 18 8 3.7243 0.4204 5.8654 19 7 3.7098 -1.3444 7.2097 20 6 3.8204 -2.7976 7.3593 21 6 3.4834 -0.5021 8.3867 22 6 2.0020 -0.3387 8.6100 23 1 1.2994 -0.8143 7.9417 24 6 1.5435 0.4181 9.6674 25 7 0.2507 0.5611 9.8620 26 14 2.7586 1.2414 10.8229 27 1 3.0831 2.5986 10.3150 28 1 2.1586 1.3499 12.1768 29 1 4.0003 0.4300 10.8954 30 6 3.9313 -1.6886 2.3601 31 6 3.4735 -0.8965 1.1332 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 2.4432 1.0927 -2.3268 36 1 3.2581 -0.1519 -4.3185 37 1 3.2748 -2.6144 -4.2750 38 1 1.7443 -2.6617 -0.4175 39 1 0.5666 0.1672 2.4510 40 1 2.1301 1.0175 2.4167 41 1 1.8579 -0.1977 4.5501 42 1 1.6038 -1.7197 3.6621 43 1 6.0817 -0.9845 4.5123 44 1 5.9107 -2.4403 5.5217 45 1 5.7161 -2.5536 3.7558 46 1 4.8631 -3.0672 7.5268 47 1 3.2201 -3.1222 8.2092 48 1 3.4602 -3.2846 6.4530 49 1 3.9330 -0.9717 9.2616 50 1 3.9367 0.4761 8.2260 51 1 -0.0718 1.0932 10.6061 52 1 3.4494 -2.6664 2.3621 53 1 5.0133 -1.8162 2.3277 54 1 3.7220 -1.4514 0.2285 55 1 3.9761 0.0707 1.1165 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096424331.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:22 Heat of formation + Delta-G solvation = 11.195814 kcal Electronic energy + Delta-G solvation = -33537.067754 eV Core-core repulsion = 29380.887504 eV Total energy + Delta-G solvation = -4156.180250 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.63607 -41.09730 -39.75164 -37.45479 -36.54261 -34.80069 -34.19699 -32.97881 -32.24601 -31.68658 -30.48393 -29.79827 -27.48533 -27.11399 -25.53427 -25.00190 -24.57542 -23.90656 -22.91353 -21.69197 -20.79873 -19.86470 -19.14091 -18.23612 -18.00379 -17.86214 -17.27122 -16.89653 -16.47712 -16.34671 -15.96409 -15.69877 -15.64527 -15.39112 -15.27841 -15.10847 -14.88794 -14.55500 -14.48521 -14.10299 -13.99229 -13.93587 -13.67135 -13.62967 -13.37428 -13.28047 -13.12343 -13.09809 -12.89033 -12.66742 -12.59714 -12.47761 -12.41456 -12.29877 -12.20436 -12.00569 -11.76207 -11.70688 -11.59735 -10.83834 -10.71585 -10.49753 -10.35542 -9.82990 -9.46607 -9.38037 -9.24594 -8.34580 -6.39315 0.18822 0.37229 1.31493 1.35730 1.44025 1.79438 2.23020 2.30123 2.69303 2.86642 2.93753 2.99761 3.46306 3.60948 3.76197 3.80583 3.96230 3.98812 4.01694 4.07893 4.11193 4.14817 4.21147 4.32276 4.38028 4.41211 4.43622 4.45149 4.48147 4.62204 4.62696 4.70513 4.72558 4.75935 4.80601 4.83379 4.86329 4.92284 4.92915 4.95583 4.96440 5.00032 5.04401 5.22138 5.24347 5.27758 5.32958 5.45192 5.60957 5.79059 5.83183 5.90701 6.07583 6.12438 6.24402 6.61321 6.72422 7.08530 7.21567 7.47095 8.82283 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.002211 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.347965 B =12661.933929 C =13530.316517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.127 3.873 3 H 0.052 0.948 4 C -0.132 4.132 5 C -0.077 4.077 6 C -0.167 4.167 7 C 0.083 3.917 8 N -0.514 5.514 9 C 0.111 3.889 10 N -0.530 5.530 11 C 0.072 3.928 12 C 0.064 3.936 13 N -0.532 5.532 14 C 0.073 3.927 15 H 0.076 0.924 16 C -0.134 4.134 17 C 0.504 3.496 18 O -0.576 6.576 19 N -0.609 5.609 20 C 0.076 3.924 21 C 0.225 3.775 22 C -0.532 4.532 23 H 0.026 0.974 24 C 0.010 3.990 25 N -0.944 5.944 26 Si 0.948 3.052 27 H -0.278 1.278 28 H -0.274 1.274 29 H -0.238 1.238 30 C 0.059 3.941 31 C 0.063 3.937 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.044 0.956 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.050 0.950 50 H 0.016 0.984 51 H 0.268 0.732 52 H 0.049 0.951 53 H 0.102 0.898 54 H 0.089 0.911 55 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.323 -7.373 -26.067 28.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.019 3.981 3 H 0.070 0.930 4 C -0.135 4.135 5 C -0.104 4.104 6 C -0.186 4.186 7 C -0.074 4.074 8 N -0.223 5.223 9 C -0.046 4.046 10 N -0.255 5.255 11 C -0.056 4.056 12 C -0.064 4.064 13 N -0.258 5.258 14 C -0.038 4.038 15 H 0.094 0.906 16 C -0.191 4.191 17 C 0.292 3.708 18 O -0.455 6.455 19 N -0.341 5.341 20 C -0.066 4.066 21 C 0.103 3.897 22 C -0.571 4.571 23 H 0.045 0.955 24 C -0.188 4.188 25 N -0.585 5.585 26 Si 0.770 3.230 27 H -0.204 1.204 28 H -0.199 1.199 29 H -0.161 1.161 30 C -0.068 4.068 31 C -0.065 4.065 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.167 0.833 36 H 0.180 0.820 37 H 0.193 0.807 38 H 0.170 0.830 39 H 0.108 0.892 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.068 0.932 50 H 0.034 0.966 51 H 0.077 0.923 52 H 0.067 0.933 53 H 0.120 0.880 54 H 0.107 0.893 55 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.165 -7.612 -26.004 28.603 hybrid contribution -0.462 1.718 1.120 2.102 sum 8.702 -5.894 -24.884 27.013 Atomic orbital electron populations 1.21831 0.92437 1.02827 1.02434 1.20473 0.96389 0.94784 0.86479 0.92993 1.20739 1.01086 0.95339 0.96299 1.21773 0.94786 1.01500 0.92299 1.22415 1.00628 0.95566 0.99990 1.23252 0.95092 0.92686 0.96346 1.67766 1.11229 1.42197 1.01068 1.22645 0.94616 0.91768 0.95539 1.62246 1.13411 1.48541 1.01290 1.21981 1.00794 0.94561 0.88274 1.21991 0.87616 0.99015 0.97771 1.61822 1.12939 1.49455 1.01601 1.21646 1.00007 0.94292 0.87857 0.90639 1.21824 0.90285 1.02637 1.04379 1.21081 0.76151 0.88731 0.84882 1.90625 1.51512 1.17449 1.85932 1.47980 1.70129 1.08940 1.07048 1.22017 1.02879 0.78256 1.03479 1.19309 0.94558 0.91160 0.84713 1.21518 0.91933 1.31631 1.12021 0.95520 1.25849 0.97133 0.96366 0.99416 1.70052 1.15047 1.41557 1.31806 0.85719 0.79980 0.79367 0.77904 1.20360 1.19949 1.16074 1.22328 1.01814 0.95228 0.87477 1.22156 0.87107 0.99198 0.97992 0.92145 0.90870 0.91976 0.83320 0.81968 0.80744 0.82961 0.89237 0.95252 0.93740 0.94104 0.92690 0.90091 0.88431 0.89879 0.91536 0.89851 0.93190 0.96559 0.92305 0.93312 0.87990 0.89253 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.08 71.98 0.65 -1.65 16 2 C 0.13 2.29 2.30 44.17 0.10 2.39 16 3 H 0.05 0.95 8.02 -2.39 -0.02 0.93 16 4 C -0.13 -2.20 3.74 -19.77 -0.07 -2.28 16 5 C -0.08 -1.02 9.82 22.47 0.22 -0.80 16 6 C -0.17 -1.84 10.11 22.36 0.23 -1.62 16 7 C 0.08 1.16 11.18 84.69 0.95 2.11 16 8 N -0.51 -10.10 10.36 -195.85 -2.03 -12.13 16 9 C 0.11 2.12 8.86 84.67 0.75 2.87 16 10 N -0.53 -11.47 3.98 -874.86 -3.48 -14.95 16 11 C 0.07 1.96 5.40 86.31 0.47 2.42 16 12 C 0.06 2.11 5.32 86.31 0.46 2.57 16 13 N -0.53 -15.83 4.26 -874.89 -3.73 -19.56 16 14 C 0.07 2.15 1.79 44.17 0.08 2.23 16 15 H 0.08 1.98 6.08 -2.39 -0.01 1.97 16 16 C -0.13 -2.88 8.66 71.98 0.62 -2.26 16 17 C 0.50 20.86 5.93 87.66 0.52 21.38 16 18 O -0.58 -29.85 15.22 -3.03 -0.05 -29.90 16 19 N -0.61 -25.02 2.86 -851.12 -2.43 -27.45 16 20 C 0.08 2.18 9.87 127.77 1.26 3.44 16 21 C 0.23 11.12 4.23 85.63 0.36 11.48 16 22 C -0.53 -31.69 9.94 25.60 0.25 -31.43 16 23 H 0.03 1.78 8.06 -2.91 -0.02 1.75 16 24 C 0.01 0.61 5.47 84.65 0.46 1.08 16 25 N -0.94 -60.18 13.96 21.45 0.30 -59.88 16 26 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 27 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 28 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 29 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 30 C 0.06 1.27 5.13 86.31 0.44 1.71 16 31 C 0.06 1.33 5.11 86.31 0.44 1.77 16 32 H 0.06 1.07 6.46 -2.39 -0.02 1.06 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.15 3.06 7.72 -2.91 -0.02 3.04 16 39 H 0.09 2.28 6.30 -2.39 -0.02 2.27 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.04 1.90 6.51 -2.39 -0.02 1.88 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.51 7.59 -2.38 -0.02 1.49 16 45 H 0.10 1.49 6.25 -2.39 -0.01 1.47 16 46 H 0.08 1.80 7.97 -2.39 -0.02 1.78 16 47 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 48 H 0.08 1.98 5.86 -2.38 -0.01 1.97 16 49 H 0.05 2.25 7.13 -2.39 -0.02 2.24 16 50 H 0.02 0.87 6.85 -2.39 -0.02 0.85 16 51 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 52 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 53 H 0.10 1.82 6.01 -2.39 -0.01 1.81 16 54 H 0.09 1.70 5.61 -2.39 -0.01 1.69 16 55 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -80.70 420.77 -0.51 -81.21 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.82 Total: 20.37 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 8.20 Total: 15.42 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -11.36 Total: -133.97 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.05 Total: -29.90 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -80.70 -0.51 -81.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096424331.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.410 kcal (2) G-P(sol) polarization free energy of solvation -80.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds