Wall clock time and date at job start Tue Mar 31 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47584 * 2 1 4 4 C 1.50701 * 109.47052 * 239.99769 * 2 1 3 5 5 O 1.21279 * 120.00488 * 244.94468 * 4 2 1 6 6 N 1.34776 * 119.99866 * 64.94534 * 4 2 1 7 7 C 1.46497 * 120.00019 * 5.35566 * 6 4 2 8 8 C 1.46495 * 119.99903 * 185.34835 * 6 4 2 9 9 C 1.50705 * 109.46944 * 90.00558 * 8 6 4 10 10 H 1.07993 * 119.99896 * 359.97438 * 9 8 6 11 11 C 1.37874 * 120.00064 * 179.97438 * 9 8 6 12 12 N 1.31523 * 120.00054 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00022 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47363 * 90.00098 * 13 11 9 15 15 H 1.48508 * 109.47035 * 210.00218 * 13 11 9 16 16 H 1.48499 * 109.46961 * 329.99813 * 13 11 9 17 17 N 1.46904 * 109.46743 * 120.00270 * 2 1 3 18 18 C 1.46954 * 111.00254 * 58.79869 * 17 2 1 19 19 C 1.53054 * 109.36530 * 176.80998 * 18 17 2 20 20 N 1.46956 * 109.36360 * 58.39933 * 19 18 17 21 21 C 1.46904 * 110.99933 * 176.80914 * 20 19 18 22 22 H 1.09002 * 109.46623 * 73.80163 * 21 20 19 23 23 C 1.52999 * 109.47092 * 193.79765 * 21 20 19 24 24 C 1.50694 * 109.46996 * 313.80424 * 21 20 19 25 25 C 1.38672 * 120.41962 * 139.72420 * 24 21 20 26 26 C 1.38629 * 118.42524 * 179.77969 * 25 24 21 27 27 C 1.38229 * 119.15816 * 0.50846 * 26 25 24 28 28 N 1.31863 * 120.76272 * 359.72970 * 27 26 25 29 29 C 1.31888 * 121.72350 * 359.97438 * 28 27 26 30 30 C 1.46954 * 110.88196 * 300.68088 * 20 19 18 31 31 C 1.46956 * 110.99933 * 294.99579 * 17 2 1 32 32 H 1.09001 * 109.47180 * 70.77212 * 1 2 3 33 33 H 1.08995 * 109.47434 * 190.77603 * 1 2 3 34 34 H 1.09001 * 109.46668 * 310.77674 * 1 2 3 35 35 H 1.08994 * 109.47687 * 95.99631 * 7 6 4 36 36 H 1.09001 * 109.47458 * 216.00059 * 7 6 4 37 37 H 1.09005 * 109.47166 * 336.00211 * 7 6 4 38 38 H 1.09006 * 109.47422 * 210.00090 * 8 6 4 39 39 H 1.08996 * 109.47679 * 330.00216 * 8 6 4 40 40 H 0.96996 * 120.00044 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.48887 * 296.77571 * 18 17 2 42 42 H 1.09004 * 109.48985 * 56.84013 * 18 17 2 43 43 H 1.09002 * 109.48761 * 298.43169 * 19 18 17 44 44 H 1.09004 * 109.50527 * 178.38142 * 19 18 17 45 45 H 1.09008 * 109.46458 * 60.00325 * 23 21 20 46 46 H 1.08993 * 109.46885 * 179.97438 * 23 21 20 47 47 H 1.08999 * 109.47290 * 300.00596 * 23 21 20 48 48 H 1.08005 * 120.79037 * 0.02562 * 25 24 21 49 49 H 1.07999 * 120.42207 * 180.22026 * 26 25 24 50 50 H 1.07993 * 119.62286 * 179.74644 * 27 26 25 51 51 H 1.07998 * 119.61656 * 180.02562 * 29 28 27 52 52 H 1.08998 * 109.48887 * 299.35439 * 30 20 19 53 53 H 1.09001 * 109.50661 * 179.30082 * 30 20 19 54 54 H 1.08995 * 109.48940 * 303.15754 * 31 17 2 55 55 H 1.08990 * 109.48560 * 63.20575 * 31 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.6538 -1.7462 -1.1215 6 7 1.7909 -0.1948 -2.4520 7 6 1.1440 1.1133 -2.5802 8 6 2.1755 -0.9425 -3.6517 9 6 1.0343 -1.8298 -4.0780 10 1 0.1149 -1.8364 -3.5116 11 6 1.1643 -2.6331 -5.1910 12 7 2.2839 -2.6246 -5.8810 13 14 -0.2499 -3.7334 -5.7188 14 1 -1.1273 -2.9940 -6.6616 15 1 0.2886 -4.9440 -6.3897 16 1 -1.0352 -4.1372 -4.5249 17 7 2.0196 -0.6926 1.1995 18 6 1.5250 -2.0756 1.2478 19 6 2.1200 -2.7850 2.4666 20 7 1.7489 -2.0530 3.6857 21 6 2.2385 -2.7456 4.8851 22 1 3.3171 -2.6115 4.9672 23 6 1.5564 -2.1630 6.1246 24 6 1.9215 -4.2151 4.7812 25 6 2.8436 -5.1635 5.1973 26 6 2.5072 -6.5038 5.0873 27 6 1.2766 -6.8482 4.5603 28 7 0.4261 -5.9192 4.1700 29 6 0.7102 -4.6348 4.2653 30 6 2.2434 -0.6700 3.6373 31 6 1.6485 0.0394 2.4185 32 1 -0.3633 0.3384 -0.9703 33 1 -0.3634 -1.0095 0.1921 34 1 -0.3633 0.6712 0.7782 35 1 1.9043 1.8837 -2.7083 36 1 0.4824 1.1083 -3.4464 37 1 0.5639 1.3215 -1.6811 38 1 2.4123 -0.2443 -4.4547 39 1 3.0501 -1.5551 -3.4333 40 1 2.3754 -3.1900 -6.6638 41 1 0.4378 -2.0705 1.3249 42 1 1.8231 -2.6004 0.3401 43 1 3.2058 -2.8141 2.3762 44 1 1.7322 -3.8022 2.5209 45 1 0.4777 -2.2971 6.0424 46 1 1.9193 -2.6772 7.0144 47 1 1.7857 -1.1000 6.1997 48 1 3.7998 -4.8650 5.6013 49 1 3.1996 -7.2694 5.4049 50 1 1.0084 -7.8902 4.4673 51 1 -0.0119 -3.9025 3.9356 52 1 3.3307 -0.6751 3.5602 53 1 1.9457 -0.1450 4.5450 54 1 2.0366 1.0564 2.3644 55 1 0.5627 0.0688 2.5087 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096424332.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:27 Heat of formation + Delta-G solvation = 17.891890 kcal Electronic energy + Delta-G solvation = -33812.739356 eV Core-core repulsion = 29656.849470 eV Total energy + Delta-G solvation = -4155.889886 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.72201 -41.17350 -39.67946 -37.45592 -36.57967 -34.88137 -34.11983 -32.95373 -32.19216 -31.41321 -30.19210 -29.38027 -27.64566 -26.85771 -25.71543 -25.01838 -24.73039 -23.94993 -23.44837 -21.63691 -20.57580 -19.89802 -18.68717 -18.06651 -17.94417 -17.71222 -17.31438 -16.85537 -16.50423 -16.23431 -16.02905 -15.79503 -15.75397 -15.35074 -15.17155 -15.09334 -14.80322 -14.58479 -14.38870 -14.15941 -13.98310 -13.90163 -13.68398 -13.52552 -13.33488 -13.28651 -13.12318 -12.89918 -12.85441 -12.71191 -12.58747 -12.49165 -12.35444 -12.27038 -12.07446 -11.92314 -11.74454 -11.63768 -11.56357 -10.75920 -10.65654 -10.39255 -10.28307 -9.83546 -9.42115 -9.37560 -9.14924 -8.23661 -6.38772 0.14842 0.34000 1.34021 1.37260 1.47258 1.85032 2.25472 2.40042 2.73326 2.90773 3.00563 3.05557 3.45564 3.65995 3.72142 3.85074 3.95827 4.05599 4.06649 4.12186 4.13422 4.20347 4.22267 4.29067 4.37525 4.40421 4.47581 4.53469 4.61019 4.62408 4.67311 4.71374 4.78592 4.80805 4.84166 4.90030 4.93386 4.96923 4.99562 5.02945 5.07966 5.15619 5.17930 5.23810 5.26004 5.28364 5.36781 5.56380 5.76777 5.84304 5.92185 5.94687 6.05339 6.16379 6.22459 6.69842 6.82862 7.04654 7.27829 7.53343 8.83231 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.010278 B = 0.002751 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.653041 B =10176.783422 C =12073.747972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.077 3.923 3 H 0.131 0.869 4 C 0.501 3.499 5 O -0.580 6.580 6 N -0.610 5.610 7 C 0.066 3.934 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.053 0.947 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.274 1.274 17 N -0.530 5.530 18 C 0.051 3.949 19 C 0.074 3.926 20 N -0.531 5.531 21 C 0.127 3.873 22 H 0.057 0.943 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.079 4.079 26 C -0.169 4.169 27 C 0.077 3.923 28 N -0.520 5.520 29 C 0.107 3.893 30 C 0.060 3.940 31 C 0.055 3.945 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.021 0.979 39 H -0.004 1.004 40 H 0.267 0.733 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.020 0.980 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.155 0.845 49 H 0.164 0.836 50 H 0.172 0.828 51 H 0.151 0.849 52 H 0.034 0.966 53 H 0.112 0.888 54 H 0.102 0.898 55 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 5.405 27.533 28.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.034 4.034 3 H 0.149 0.851 4 C 0.289 3.711 5 O -0.461 6.461 6 N -0.342 5.342 7 C -0.076 4.076 8 C 0.139 3.861 9 C -0.579 4.579 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.199 1.199 17 N -0.255 5.255 18 C -0.077 4.077 19 C -0.054 4.054 20 N -0.256 5.256 21 C 0.018 3.982 22 H 0.074 0.926 23 C -0.187 4.187 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.188 4.188 27 C -0.079 4.079 28 N -0.229 5.229 29 C -0.050 4.050 30 C -0.067 4.067 31 C -0.072 4.072 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.039 0.961 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.173 0.827 49 H 0.181 0.819 50 H 0.189 0.811 51 H 0.168 0.832 52 H 0.052 0.948 53 H 0.130 0.870 54 H 0.120 0.880 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.504 4.570 27.076 27.573 hybrid contribution 0.519 -0.847 -0.901 1.341 sum -1.986 3.723 26.175 26.513 Atomic orbital electron populations 1.22549 0.93880 1.03013 1.04677 1.21592 0.95170 0.98975 0.87697 0.85117 1.21193 0.79380 0.85151 0.85340 1.90543 1.42543 1.26449 1.86537 1.48107 1.59257 1.20777 1.06020 1.22220 0.98226 0.82763 1.04411 1.18704 0.94707 0.90757 0.81911 1.21684 1.00571 1.24514 1.11096 0.92871 1.25854 0.98699 0.98220 0.96367 1.70059 1.27148 1.40803 1.18834 0.85444 0.78936 0.78244 0.78374 1.18615 1.20670 1.19884 1.62061 1.59687 1.02040 1.01715 1.22306 0.96931 0.89924 0.98576 1.21963 0.97203 0.97078 0.89166 1.62282 1.59634 1.02784 1.00912 1.20553 0.97929 0.88235 0.91446 0.92553 1.21772 1.00879 1.01526 0.94557 1.20928 0.95651 0.96774 1.00561 1.21820 0.99506 0.92802 0.96347 1.22437 0.98362 0.97502 1.00538 1.23230 0.90716 0.99809 0.94147 1.67724 1.35720 1.02521 1.16951 1.22659 0.95659 0.92078 0.94637 1.22262 0.97485 0.88101 0.98879 1.22336 0.99575 0.97809 0.87508 0.90293 0.93553 0.88064 0.91448 0.91705 0.87548 0.96064 0.98621 0.92421 0.94488 0.91360 0.96154 0.91387 0.92328 0.91206 0.90516 0.82710 0.81886 0.81082 0.83155 0.94785 0.87042 0.88009 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.46 7.93 71.98 0.57 -3.89 16 2 C 0.08 2.24 1.94 44.17 0.09 2.33 16 3 H 0.13 2.97 7.72 -2.39 -0.02 2.95 16 4 C 0.50 21.35 6.77 87.66 0.59 21.94 16 5 O -0.58 -30.86 13.26 -3.03 -0.04 -30.90 16 6 N -0.61 -26.36 2.85 -851.14 -2.43 -28.79 16 7 C 0.07 1.96 9.71 127.77 1.24 3.20 16 8 C 0.26 14.45 5.23 85.64 0.45 14.89 16 9 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 10 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.44 5.46 84.65 0.46 0.90 16 12 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 13 Si 0.97 45.82 29.54 68.60 2.03 47.84 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 17 N -0.53 -15.31 4.52 -874.88 -3.95 -19.26 16 18 C 0.05 1.69 4.73 86.31 0.41 2.10 16 19 C 0.07 2.13 5.00 86.31 0.43 2.56 16 20 N -0.53 -10.97 4.03 -874.85 -3.53 -14.49 16 21 C 0.13 2.14 2.35 44.17 0.10 2.25 16 22 H 0.06 0.92 7.97 -2.39 -0.02 0.90 16 23 C -0.13 -1.59 9.19 71.98 0.66 -0.92 16 24 C -0.14 -2.70 3.76 -19.78 -0.07 -2.78 16 25 C -0.08 -1.31 9.82 22.47 0.22 -1.08 16 26 C -0.17 -2.69 10.11 22.36 0.23 -2.47 16 27 C 0.08 1.55 11.18 84.69 0.95 2.50 16 28 N -0.52 -13.56 10.36 -195.84 -2.03 -15.59 16 29 C 0.11 2.57 8.47 84.67 0.72 3.29 16 30 C 0.06 1.05 5.43 86.31 0.47 1.52 16 31 C 0.05 1.05 5.26 86.31 0.45 1.50 16 32 H 0.08 1.94 5.40 -2.39 -0.01 1.93 16 33 H 0.05 1.35 5.92 -2.39 -0.01 1.34 16 34 H 0.10 1.71 7.16 -2.39 -0.02 1.70 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 37 H 0.11 2.37 4.12 -2.38 -0.01 2.36 16 38 H 0.02 1.20 8.07 -2.38 -0.02 1.18 16 39 H 0.00 -0.28 7.35 -2.39 -0.02 -0.30 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.04 1.21 6.24 -2.39 -0.01 1.19 16 42 H 0.07 3.02 5.22 -2.39 -0.01 3.01 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 2.07 5.18 -2.38 -0.01 2.06 16 45 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.72 6.63 -2.39 -0.02 0.70 16 48 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 49 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 50 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 51 H 0.15 3.75 7.69 -2.91 -0.02 3.73 16 52 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 53 H 0.11 1.28 6.50 -2.39 -0.02 1.27 16 54 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 55 H 0.05 0.96 6.85 -2.39 -0.02 0.94 16 Total: -1.00 -80.23 416.16 -0.58 -80.81 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.88 Total: 20.98 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 8.20 Total: 16.41 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -11.65 Total: -135.14 kcal Atomic # 8 Polarization: -30.86 SS G_CDS: -0.04 Total: -30.90 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -80.23 -0.58 -80.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096424332.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.701 kcal (2) G-P(sol) polarization free energy of solvation -80.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds