Wall clock time and date at job start Tue Mar 31 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47113 * 2 1 4 4 C 1.50697 * 109.47180 * 239.99841 * 2 1 3 5 5 O 1.21282 * 119.99468 * 293.94417 * 4 2 1 6 6 N 1.34770 * 120.00290 * 113.94005 * 4 2 1 7 7 C 1.46498 * 119.99782 * 2.16142 * 6 4 2 8 8 C 1.46502 * 120.00087 * 182.15634 * 6 4 2 9 9 C 1.50699 * 109.47005 * 90.00009 * 8 6 4 10 10 H 1.08003 * 120.00033 * 0.02562 * 9 8 6 11 11 C 1.37879 * 119.99801 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99873 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00074 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47129 * 59.99579 * 13 11 9 15 15 H 1.48499 * 109.47514 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46876 * 300.00019 * 13 11 9 17 17 N 1.46901 * 109.46910 * 119.99677 * 2 1 3 18 18 C 1.46961 * 111.00092 * 283.65726 * 17 2 1 19 19 C 1.53049 * 109.36404 * 183.19149 * 18 17 2 20 20 N 1.46952 * 109.36340 * 301.59879 * 19 18 17 21 21 C 1.46908 * 110.99844 * 183.18921 * 20 19 18 22 22 H 1.08998 * 109.46966 * 47.77719 * 21 20 19 23 23 C 1.53002 * 109.46883 * 287.77963 * 21 20 19 24 24 C 1.50705 * 109.47119 * 167.78152 * 21 20 19 25 25 C 1.38670 * 120.41841 * 139.79890 * 24 21 20 26 26 C 1.38630 * 118.41919 * 180.02562 * 25 24 21 27 27 C 1.38221 * 119.16187 * 359.97438 * 26 25 24 28 28 N 1.31863 * 120.76455 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.72180 * 0.02562 * 28 27 26 30 30 C 1.46960 * 110.88025 * 59.32533 * 20 19 18 31 31 C 1.46949 * 111.00379 * 47.46097 * 17 2 1 32 32 H 1.09004 * 109.46952 * 304.54766 * 1 2 3 33 33 H 1.08994 * 109.47296 * 64.54740 * 1 2 3 34 34 H 1.09000 * 109.47007 * 184.55119 * 1 2 3 35 35 H 1.09000 * 109.47745 * 84.83665 * 7 6 4 36 36 H 1.09008 * 109.46602 * 204.83330 * 7 6 4 37 37 H 1.09000 * 109.47257 * 324.83059 * 7 6 4 38 38 H 1.09006 * 109.47168 * 210.00454 * 8 6 4 39 39 H 1.09001 * 109.46897 * 330.00079 * 8 6 4 40 40 H 0.97003 * 119.99738 * 180.02562 * 12 11 9 41 41 H 1.08996 * 109.48685 * 63.22061 * 18 17 2 42 42 H 1.09005 * 109.48797 * 303.15778 * 18 17 2 43 43 H 1.09002 * 109.48645 * 181.63072 * 19 18 17 44 44 H 1.09007 * 109.50612 * 61.57823 * 19 18 17 45 45 H 1.09001 * 109.47192 * 60.00530 * 23 21 20 46 46 H 1.09002 * 109.46572 * 180.02562 * 23 21 20 47 47 H 1.08998 * 109.47120 * 299.99662 * 23 21 20 48 48 H 1.08004 * 120.79124 * 359.97438 * 25 24 21 49 49 H 1.07997 * 120.41650 * 180.02562 * 26 25 24 50 50 H 1.08003 * 119.62052 * 180.02562 * 27 26 25 51 51 H 1.08004 * 119.61110 * 180.02562 * 29 28 27 52 52 H 1.08996 * 109.49057 * 60.64739 * 30 20 19 53 53 H 1.09005 * 109.48699 * 180.71190 * 30 20 19 54 54 H 1.09005 * 109.49013 * 296.77753 * 31 17 2 55 55 H 1.09001 * 109.49249 * 56.81866 * 31 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 1.8326 -1.8987 -1.3685 6 7 2.7035 -0.0254 -2.1773 7 6 2.9860 1.3996 -1.9886 8 6 3.1506 -0.7058 -3.3953 9 6 2.0753 -0.6117 -4.4468 10 1 1.1514 -0.0962 -4.2298 11 6 2.2713 -1.1828 -5.6864 12 7 3.3966 -1.8101 -5.9508 13 14 0.9388 -1.0655 -6.9901 14 1 0.6660 0.3626 -7.2921 15 1 1.3919 -1.7553 -8.2246 16 1 -0.3014 -1.7112 -6.4897 17 7 2.0196 -0.6924 1.1995 18 6 1.8898 0.1599 2.3896 19 6 2.4822 -0.5652 3.6002 20 7 1.7832 -1.8434 3.7927 21 6 2.2729 -2.5358 4.9922 22 1 2.3056 -1.8364 5.8275 23 6 3.6778 -3.0812 4.7283 24 6 1.3462 -3.6760 5.3275 25 6 1.8559 -4.8913 5.7591 26 6 0.9660 -5.9120 6.0558 27 6 -0.3901 -5.6859 5.9130 28 7 -0.8392 -4.5170 5.4998 29 6 -0.0219 -3.5240 5.2078 30 6 1.9131 -2.6958 2.6026 31 6 1.3207 -1.9707 1.3919 32 1 -0.3633 0.5828 0.8465 33 1 -0.3633 0.4416 -0.9279 34 1 -0.3633 -1.0244 0.0815 35 1 3.8983 1.5149 -1.4033 36 1 3.1153 1.8761 -2.9605 37 1 2.1547 1.8682 -1.4619 38 1 4.0609 -0.2320 -3.7629 39 1 3.3509 -1.7540 -3.1731 40 1 3.5347 -2.2116 -6.8230 41 1 0.8362 0.3715 2.5721 42 1 2.4261 1.0950 2.2275 43 1 2.3608 0.0532 4.4897 44 1 3.5423 -0.7525 3.4294 45 1 4.3481 -2.2565 4.4859 46 1 4.0410 -3.5953 5.6182 47 1 3.6452 -3.7806 3.8930 48 1 2.9209 -5.0394 5.8610 49 1 1.3277 -6.8714 6.3949 50 1 -1.0901 -6.4758 6.1424 51 1 -0.4269 -2.5805 4.8727 52 1 2.9667 -2.9074 2.4201 53 1 1.3768 -3.6308 2.7647 54 1 0.2606 -1.7834 1.5631 55 1 1.4417 -2.5889 0.5024 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096424333.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:32 Heat of formation + Delta-G solvation = 9.141708 kcal Electronic energy + Delta-G solvation = -33536.556644 eV Core-core repulsion = 29380.287321 eV Total energy + Delta-G solvation = -4156.269323 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.227 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.63553 -41.08538 -39.79567 -37.58326 -36.51996 -34.78932 -34.20795 -32.77371 -31.87971 -31.43930 -30.02425 -29.64861 -27.43945 -27.15802 -25.93399 -24.90007 -24.71461 -24.10589 -23.34628 -21.68542 -20.23308 -19.66178 -18.68259 -18.16183 -18.08227 -17.59065 -17.16252 -16.91594 -16.47211 -16.38397 -16.22297 -15.81512 -15.51820 -15.38361 -15.11954 -15.06982 -14.58188 -14.55134 -14.41153 -14.12754 -14.02453 -13.85823 -13.49367 -13.47868 -13.33518 -13.20626 -13.13561 -13.05052 -12.84997 -12.72793 -12.68014 -12.59922 -12.29414 -12.27258 -12.21077 -11.98396 -11.73619 -11.62917 -11.54572 -10.69907 -10.65063 -10.39366 -10.35819 -9.83080 -9.39113 -9.36298 -9.16099 -8.22771 -6.38099 0.22705 0.40112 1.35315 1.39827 1.47047 1.78590 2.26617 2.43810 2.78316 2.99362 3.06179 3.08892 3.53842 3.67986 3.80223 3.85386 3.99281 4.00453 4.11193 4.11860 4.13575 4.20956 4.26493 4.31526 4.39696 4.42608 4.44050 4.49318 4.56887 4.63131 4.66735 4.70973 4.76904 4.84604 4.85461 4.92280 4.96016 4.96841 4.99893 5.01360 5.06057 5.14164 5.17216 5.22085 5.23315 5.31014 5.35829 5.56386 5.82989 5.85105 5.90867 5.96889 6.05838 6.16922 6.19607 6.69646 6.81987 7.11165 7.28134 7.52406 8.84001 Molecular weight = 360.23amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.002200 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.059130 B =12726.313203 C =13421.102648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.074 3.926 3 H 0.128 0.872 4 C 0.510 3.490 5 O -0.590 6.590 6 N -0.610 5.610 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.541 4.541 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.258 1.258 15 H -0.278 1.278 16 H -0.278 1.278 17 N -0.532 5.532 18 C 0.055 3.945 19 C 0.060 3.940 20 N -0.530 5.530 21 C 0.129 3.871 22 H 0.114 0.886 23 C -0.183 4.183 24 C -0.131 4.131 25 C -0.081 4.081 26 C -0.173 4.173 27 C 0.076 3.924 28 N -0.520 5.520 29 C 0.108 3.892 30 C 0.074 3.926 31 C 0.052 3.948 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.022 0.978 39 H -0.006 1.006 40 H 0.267 0.733 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.041 0.959 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.048 0.952 48 H 0.155 0.845 49 H 0.160 0.840 50 H 0.170 0.830 51 H 0.155 0.845 52 H 0.035 0.965 53 H 0.063 0.937 54 H 0.043 0.957 55 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 3.288 28.840 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.038 4.038 3 H 0.146 0.854 4 C 0.298 3.702 5 O -0.470 6.470 6 N -0.342 5.342 7 C -0.064 4.064 8 C 0.140 3.860 9 C -0.580 4.580 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.203 1.203 16 H -0.204 1.204 17 N -0.257 5.257 18 C -0.072 4.072 19 C -0.068 4.068 20 N -0.254 5.254 21 C 0.021 3.979 22 H 0.131 0.869 23 C -0.241 4.241 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.192 4.192 27 C -0.080 4.080 28 N -0.229 5.229 29 C -0.049 4.049 30 C -0.054 4.054 31 C -0.076 4.076 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.012 0.988 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.067 0.933 48 H 0.172 0.828 49 H 0.178 0.822 50 H 0.187 0.813 51 H 0.173 0.827 52 H 0.053 0.947 53 H 0.081 0.919 54 H 0.061 0.939 55 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.323 2.748 28.523 28.749 hybrid contribution 0.425 -0.717 -1.376 1.609 sum -1.898 2.031 27.146 27.288 Atomic orbital electron populations 1.22241 0.94290 1.02665 1.03511 1.21726 0.95083 0.99014 0.87934 0.85434 1.21126 0.77297 0.86981 0.84758 1.90550 1.58852 1.18023 1.79607 1.48177 1.54992 1.11740 1.19258 1.21946 1.01974 0.79482 1.02950 1.18713 0.94348 0.91631 0.81305 1.21666 1.02550 1.35775 0.98008 0.92815 1.25884 0.98143 0.94413 1.00830 1.70056 1.26445 1.36838 1.23548 0.85471 0.78592 0.79085 0.77689 1.18264 1.20344 1.20406 1.62086 1.56555 1.04578 1.02501 1.22358 1.00815 0.96075 0.87975 1.22238 0.96105 0.90103 0.98326 1.62360 1.56368 1.04566 1.02110 1.20500 0.90829 0.93242 0.93376 0.86856 1.22477 0.96896 1.02042 1.02709 1.20906 0.95439 0.96247 1.00704 1.21906 1.01696 0.91856 0.95223 1.22433 0.94173 1.01284 1.01325 1.23195 0.95256 0.94501 0.95073 1.67727 1.41301 1.01798 1.12091 1.22725 0.90075 0.97593 0.94529 1.21913 0.98898 0.95434 0.89144 1.22289 0.96037 0.91340 0.97978 0.88633 0.92259 0.93217 0.91155 0.91260 0.89029 0.96042 0.98783 0.92408 0.93105 0.88098 0.87361 0.94064 0.91697 0.89872 0.93335 0.82762 0.82247 0.81263 0.82730 0.94663 0.91868 0.93926 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 8.37 71.98 0.60 -3.94 16 2 C 0.07 2.16 2.35 44.17 0.10 2.26 16 3 H 0.13 2.88 5.34 -2.39 -0.01 2.87 16 4 C 0.51 21.82 6.67 87.66 0.58 22.40 16 5 O -0.59 -31.28 14.01 -3.03 -0.04 -31.32 16 6 N -0.61 -26.62 2.86 -851.13 -2.43 -29.05 16 7 C 0.08 2.36 9.88 127.77 1.26 3.62 16 8 C 0.26 14.52 5.15 85.63 0.44 14.96 16 9 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.36 5.46 84.65 0.46 0.82 16 12 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 13 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 17 N -0.53 -14.34 4.60 -874.87 -4.03 -18.37 16 18 C 0.05 0.97 5.40 86.31 0.47 1.44 16 19 C 0.06 0.91 5.36 86.31 0.46 1.38 16 20 N -0.53 -9.54 3.92 -874.84 -3.43 -12.97 16 21 C 0.13 1.85 2.71 44.17 0.12 1.97 16 22 H 0.11 1.26 7.98 -2.39 -0.02 1.24 16 23 C -0.18 -2.45 7.39 71.98 0.53 -1.91 16 24 C -0.13 -2.23 4.51 -19.77 -0.09 -2.32 16 25 C -0.08 -1.17 9.22 22.47 0.21 -0.96 16 26 C -0.17 -2.41 10.11 22.36 0.23 -2.19 16 27 C 0.08 1.35 11.18 84.68 0.95 2.30 16 28 N -0.52 -12.03 10.36 -195.84 -2.03 -14.06 16 29 C 0.11 2.27 10.30 84.67 0.87 3.14 16 30 C 0.07 1.85 4.68 86.31 0.40 2.26 16 31 C 0.05 1.56 4.54 86.31 0.39 1.95 16 32 H 0.09 1.91 7.20 -2.39 -0.02 1.89 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.57 6.10 -2.39 -0.01 1.56 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.17 8.03 -2.38 -0.02 2.16 16 37 H 0.09 2.08 6.26 -2.39 -0.01 2.06 16 38 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 39 H -0.01 -0.39 7.39 -2.39 -0.02 -0.40 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.05 0.87 7.13 -2.39 -0.02 0.85 16 42 H 0.10 1.38 8.02 -2.38 -0.02 1.36 16 43 H 0.11 1.07 8.05 -2.39 -0.02 1.05 16 44 H 0.04 0.70 6.84 -2.38 -0.02 0.68 16 45 H 0.06 0.88 6.84 -2.39 -0.02 0.86 16 46 H 0.08 0.78 6.74 -2.39 -0.02 0.76 16 47 H 0.05 0.84 6.39 -2.39 -0.02 0.83 16 48 H 0.15 1.53 6.12 -2.91 -0.02 1.52 16 49 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 50 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 51 H 0.16 3.27 7.73 -2.91 -0.02 3.25 16 52 H 0.04 0.96 6.41 -2.39 -0.02 0.94 16 53 H 0.06 1.68 7.14 -2.38 -0.02 1.66 16 54 H 0.04 1.27 6.32 -2.38 -0.02 1.25 16 55 H 0.07 2.61 5.59 -2.39 -0.01 2.60 16 Total: -1.00 -79.26 416.77 -0.53 -79.78 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.89 Total: 19.73 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 8.24 Total: 15.70 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -11.63 Total: -131.39 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.04 Total: -31.32 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.26 -0.53 -79.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096424333.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.924 kcal (2) G-P(sol) polarization free energy of solvation -79.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds