Wall clock time and date at job start Tue Mar 31 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99644 * 2 1 4 4 H 1.48497 * 109.47207 * 269.99746 * 3 2 1 5 5 H 1.48502 * 109.47400 * 30.00100 * 3 2 1 6 6 H 1.48509 * 109.47070 * 150.00102 * 3 2 1 7 7 C 1.37869 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00358 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00387 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47578 * 179.97438 * 9 7 2 11 11 C 1.46502 * 120.00250 * 285.11318 * 10 9 7 12 12 C 1.53003 * 109.46964 * 275.18590 * 11 10 9 13 13 C 1.53778 * 113.61337 * 275.97438 * 12 11 10 14 14 C 1.53955 * 87.01564 * 220.04873 * 13 12 11 15 15 C 1.53777 * 113.61191 * 178.36258 * 12 11 10 16 16 C 1.34780 * 119.99877 * 105.10659 * 10 9 7 17 17 O 1.21567 * 120.00002 * 186.63066 * 16 10 9 18 18 C 1.47710 * 119.99667 * 6.63652 * 16 10 9 19 19 C 1.40072 * 120.54446 * 325.90082 * 18 16 10 20 20 C 1.38445 * 118.29910 * 180.24534 * 19 18 16 21 21 F 1.35098 * 120.35845 * 179.76957 * 20 19 18 22 22 C 1.38768 * 119.27904 * 359.75082 * 20 19 18 23 23 Cl 1.73601 * 119.47776 * 180.02562 * 22 20 19 24 24 N 1.32010 * 121.04080 * 0.02562 * 22 20 19 25 25 C 1.31815 * 121.87169 * 359.97438 * 24 22 20 26 26 Cl 1.73592 * 119.70168 * 179.97438 * 25 24 22 27 27 H 0.97001 * 120.00092 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46943 * 59.99722 * 9 7 2 29 29 H 1.08995 * 109.46975 * 300.00177 * 9 7 2 30 30 H 1.08999 * 109.47198 * 35.18920 * 11 10 9 31 31 H 1.09003 * 109.46714 * 155.18781 * 11 10 9 32 32 H 1.09003 * 112.84857 * 47.16972 * 12 11 10 33 33 H 1.09001 * 113.61329 * 334.56222 * 13 12 11 34 34 H 1.08994 * 113.61936 * 105.46945 * 13 12 11 35 35 H 1.08999 * 113.53621 * 270.81128 * 14 13 12 36 36 H 1.09007 * 113.66684 * 139.93305 * 14 13 12 37 37 H 1.08997 * 113.61593 * 254.52700 * 15 12 11 38 38 H 1.09001 * 113.61233 * 25.35245 * 15 12 11 39 39 H 1.08001 * 120.85108 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.9306 -3.9545 -1.2243 12 6 2.0692 -4.8779 -2.0882 13 6 2.1701 -6.3610 -1.6945 14 6 2.1626 -6.6783 -3.2010 15 6 2.7286 -5.2656 -3.4222 16 6 2.4098 -4.3225 1.1274 17 8 3.2843 -5.1662 1.1625 18 6 1.5736 -4.0754 2.3197 19 6 1.1085 -2.7860 2.6082 20 6 0.3324 -2.6063 3.7405 21 9 -0.1342 -1.3795 4.0608 22 6 0.0388 -3.6999 4.5426 23 17 -0.9344 -3.4805 5.9633 24 7 0.4879 -4.9044 4.2424 25 6 1.2299 -5.1246 3.1754 26 17 1.7908 -6.7317 2.8346 27 1 -0.4850 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8902 30 1 3.1561 -3.0438 -1.7791 31 1 3.8599 -4.4618 -0.9652 32 1 1.0440 -4.5232 -2.1947 33 1 3.1061 -6.6184 -1.1988 34 1 1.2932 -6.7328 -1.1647 35 1 1.1625 -6.8172 -3.6116 36 1 2.8518 -7.4741 -3.4839 37 1 2.3018 -4.7545 -4.2851 38 1 3.8175 -5.2217 -3.4000 39 1 1.3527 -1.9526 1.9661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096425234.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:47 Heat of formation + Delta-G solvation = -14.712667 kcal Electronic energy + Delta-G solvation = -28253.296605 eV Core-core repulsion = 23971.016854 eV Total energy + Delta-G solvation = -4282.279751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.055 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -48.86075 -40.68219 -39.22268 -37.99004 -36.86266 -36.48373 -35.35445 -32.90861 -32.70500 -30.66272 -28.62157 -27.31534 -25.35979 -24.68625 -23.98683 -23.16149 -22.40340 -19.58285 -19.10587 -17.99461 -17.64652 -17.12648 -16.82006 -16.20442 -15.88451 -15.71303 -14.98946 -14.87395 -14.68518 -14.52200 -14.24657 -13.79815 -13.74871 -13.29897 -12.72620 -12.67545 -12.40726 -12.30846 -12.21040 -11.79526 -11.58905 -11.36724 -11.25761 -11.13400 -11.09782 -10.96015 -10.78478 -10.54185 -10.46356 -10.20095 -10.18086 -9.97843 -9.91643 -9.58754 -9.18779 -8.76705 -8.72692 -7.89636 -6.44193 -4.55604 0.33818 0.84884 1.36282 1.95730 2.86401 3.10244 3.19395 3.21191 3.40846 3.62287 3.88107 4.13466 4.42969 4.52412 4.81856 4.86595 4.90782 4.96448 4.99647 5.07442 5.20053 5.50207 5.73362 5.77006 5.81867 5.93952 5.97820 6.03127 6.08952 6.23248 6.35358 6.37054 6.39451 6.56450 6.77060 6.91017 7.17843 7.24320 7.49938 7.71536 8.05234 8.49546 8.67816 9.14506 10.60518 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.007124 B = 0.005555 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3929.450995 B = 5039.551290 C = 8340.538828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.070 3.930 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.208 3.792 10 N -0.578 5.578 11 C 0.130 3.870 12 C -0.124 4.124 13 C -0.131 4.131 14 C -0.143 4.143 15 C -0.131 4.131 16 C 0.559 3.441 17 O -0.536 6.536 18 C -0.134 4.134 19 C -0.052 4.052 20 C 0.063 3.937 21 F -0.106 7.106 22 C 0.168 3.832 23 Cl -0.008 7.008 24 N -0.461 5.461 25 C 0.218 3.782 26 Cl 0.011 6.989 27 H 0.271 0.729 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -7.594 1.601 7.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.087 0.913 9 C 0.089 3.911 10 N -0.307 5.307 11 C 0.007 3.993 12 C -0.144 4.144 13 C -0.168 4.168 14 C -0.181 4.181 15 C -0.169 4.169 16 C 0.345 3.655 17 O -0.415 6.415 18 C -0.140 4.140 19 C -0.078 4.078 20 C 0.039 3.961 21 F -0.084 7.084 22 C 0.003 3.997 23 Cl 0.021 6.979 24 N -0.174 5.174 25 C 0.052 3.948 26 Cl 0.040 6.960 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.417 -8.671 2.246 8.967 hybrid contribution 0.121 1.806 -0.281 1.832 sum 0.538 -6.865 1.964 7.161 Atomic orbital electron populations 1.69909 1.06027 1.28123 1.47309 1.25005 0.94939 0.99605 0.94024 0.86476 0.79992 0.82483 0.78629 1.20192 1.20719 1.19449 1.21446 0.94108 0.89929 1.53541 0.91300 1.20238 0.88296 0.82929 0.99646 1.48013 1.42349 1.31686 1.08696 1.21388 0.94514 0.98931 0.84420 1.22935 1.00547 0.95294 0.95580 1.22955 1.02403 0.96017 0.95445 1.22840 1.00824 0.97016 0.97400 1.22838 1.00407 0.96446 0.97218 1.17555 0.83496 0.81972 0.82471 1.90755 1.32643 1.34745 1.83364 1.20709 1.02192 0.92382 0.98753 1.23508 0.90685 1.00367 0.93214 1.18110 1.00978 0.81035 0.95945 1.91609 1.86201 1.38679 1.91903 1.21687 0.97317 0.88802 0.91937 1.98422 1.67291 1.96183 1.36020 1.66358 1.11577 1.21766 1.17731 1.21457 0.94091 0.89015 0.90188 1.98438 1.86032 1.18443 1.93082 0.91893 0.94322 0.92784 0.89818 0.90190 0.89127 0.89611 0.92264 0.90685 0.91935 0.91653 0.90156 0.75979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.77 13.29 55.43 0.74 -21.03 16 2 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 18.84 29.54 -169.99 -5.02 13.81 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.55 -12.66 7.55 -34.44 -0.26 -12.92 16 8 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.21 4.39 4.72 -5.19 -0.02 4.36 16 10 N -0.58 -10.92 2.50 -176.22 -0.44 -11.36 16 11 C 0.13 2.16 5.27 -4.04 -0.02 2.14 16 12 C -0.12 -1.81 3.96 -89.81 -0.36 -2.17 16 13 C -0.13 -1.82 7.65 -25.83 -0.20 -2.02 16 14 C -0.14 -1.67 8.09 -25.83 -0.21 -1.88 16 15 C -0.13 -1.58 7.65 -25.92 -0.20 -1.78 16 16 C 0.56 10.70 7.17 -12.39 -0.09 10.61 16 17 O -0.54 -10.63 14.49 5.31 0.08 -10.55 16 18 C -0.13 -2.46 5.52 -104.80 -0.58 -3.04 16 19 C -0.05 -0.97 7.53 -38.82 -0.29 -1.26 16 20 C 0.06 1.09 7.30 -39.31 -0.29 0.80 16 21 F -0.11 -1.86 16.84 2.25 0.04 -1.82 16 22 C 0.17 2.77 7.28 -17.28 -0.13 2.65 16 23 Cl -0.01 -0.11 28.76 -51.86 -1.49 -1.60 16 24 N -0.46 -7.88 10.30 -7.10 -0.07 -7.95 16 25 C 0.22 3.82 7.30 -17.02 -0.12 3.70 16 26 Cl 0.01 0.18 26.80 -51.86 -1.39 -1.21 16 27 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 28 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.06 1.17 3.72 -52.35 -0.19 0.98 16 30 H 0.08 1.41 7.90 -51.93 -0.41 1.00 16 31 H 0.08 1.33 6.97 -51.93 -0.36 0.97 16 32 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 33 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 39 H 0.22 4.59 4.08 -52.49 -0.21 4.38 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -23.79 359.92 -9.09 -32.88 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.09 Total: 2.65 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.86 Total: 0.76 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.22 Total: -40.34 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -2.88 Total: -2.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -23.79 -9.09 -32.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096425234.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.169 kcal (2) G-P(sol) polarization free energy of solvation -23.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds