Wall clock time and date at job start Tue Mar 31 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38247 * 120.00118 * 2 1 4 4 C 1.38219 * 120.00639 * 180.27569 * 3 2 1 5 5 C 1.38272 * 120.01940 * 359.75084 * 4 3 2 6 6 S 1.76198 * 119.99263 * 179.97438 * 5 4 3 7 7 O 1.42101 * 106.40262 * 23.56255 * 6 5 4 8 8 O 1.42097 * 106.40148 * 156.48384 * 6 5 4 9 9 N 1.65603 * 107.21763 * 270.02135 * 6 5 4 10 10 C 1.46507 * 119.99913 * 90.00060 * 9 6 5 11 11 C 1.46498 * 119.99852 * 269.99991 * 9 6 5 12 12 H 1.08997 * 109.47371 * 0.02562 * 11 9 6 13 13 C 1.53004 * 109.46714 * 120.00241 * 11 9 6 14 14 C 1.50701 * 109.47100 * 239.99775 * 11 9 6 15 15 H 1.07994 * 120.00019 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00023 * 180.02562 * 14 11 9 17 17 N 1.31518 * 120.00044 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00085 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47154 * 60.00178 * 18 16 14 20 20 H 1.48506 * 109.46923 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47278 * 299.99913 * 18 16 14 22 22 C 1.38195 * 120.00976 * 0.02562 * 5 4 3 23 23 C 1.38298 * 120.00407 * 179.79678 * 2 1 3 24 24 Br 1.89100 * 120.01401 * 359.97438 * 23 2 1 25 25 H 1.08998 * 109.46719 * 270.20440 * 1 2 3 26 26 H 1.08996 * 109.47181 * 30.20307 * 1 2 3 27 27 H 1.09004 * 109.46842 * 150.20474 * 1 2 3 28 28 H 1.07991 * 119.99679 * 0.02562 * 3 2 1 29 29 H 1.07991 * 119.99261 * 179.72440 * 4 3 2 30 30 H 1.09004 * 109.46748 * 90.00156 * 10 9 6 31 31 H 1.08999 * 109.46870 * 209.99924 * 10 9 6 32 32 H 1.08998 * 109.47106 * 330.00016 * 10 9 6 33 33 H 1.09003 * 109.47102 * 299.99650 * 13 11 9 34 34 H 1.08997 * 109.47150 * 59.99928 * 13 11 9 35 35 H 1.09006 * 109.46650 * 180.02562 * 13 11 9 36 36 H 0.96993 * 120.00456 * 179.97438 * 17 16 14 37 37 H 1.07993 * 120.00195 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1974 -0.0058 5 6 4.2724 0.0002 -0.0063 6 16 6.0343 0.0012 -0.0143 7 8 6.4373 1.2521 0.5260 8 8 6.4387 -1.2473 0.5304 9 7 6.5173 -0.0014 -1.5984 10 6 6.7302 1.2663 -2.3013 11 6 6.7316 -1.2712 -2.2967 12 1 6.5251 -2.0986 -1.6179 13 6 5.7933 -1.3549 -3.5023 14 6 8.1613 -1.3511 -2.7665 15 1 8.8423 -0.5375 -2.5647 16 6 8.6000 -2.4628 -3.4540 17 7 7.7709 -3.4538 -3.6993 18 14 10.3724 -2.5621 -4.0357 19 1 11.2828 -2.4818 -2.8652 20 1 10.5896 -3.8493 -4.7437 21 1 10.6539 -1.4345 -4.9600 22 6 3.5821 -1.1970 -0.0016 23 6 2.1986 -1.1976 0.0042 24 35 1.2536 -2.8356 0.0108 25 1 -0.3633 0.0037 1.0277 26 1 -0.3633 0.8881 -0.5170 27 1 -0.3633 -0.8919 -0.5107 28 1 1.6583 2.1324 0.0004 29 1 4.1202 2.1327 -0.0103 30 1 7.7661 1.5817 -2.1759 31 1 6.5166 1.1339 -3.3619 32 1 6.0665 2.0263 -1.8890 33 1 4.7592 -1.2971 -3.1626 34 1 5.9994 -0.5275 -4.1813 35 1 5.9525 -2.2999 -4.0217 36 1 8.0794 -4.2357 -4.1833 37 1 4.1226 -2.1320 -0.0025 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096427916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:26 Heat of formation + Delta-G solvation = -63.562949 kcal Electronic energy + Delta-G solvation = -22737.755140 eV Core-core repulsion = 19266.714746 eV Total energy + Delta-G solvation = -3471.040394 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 361.013 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55650 -38.38829 -37.92301 -36.93080 -34.54270 -34.40496 -33.26431 -30.93723 -30.56054 -28.27333 -27.29593 -27.00054 -23.87721 -23.10440 -22.46942 -20.00136 -18.97715 -18.58691 -18.12612 -17.37018 -16.79759 -16.51286 -16.14525 -15.54762 -15.29350 -15.15456 -14.77133 -14.72314 -14.58866 -13.74012 -13.45130 -13.43099 -13.34772 -13.27257 -13.19113 -13.16456 -12.98676 -12.78083 -12.59998 -12.35716 -12.29371 -12.18576 -12.10267 -12.01398 -11.80858 -11.18495 -11.16182 -10.49569 -10.24855 -9.94087 -9.66924 -8.10705 -6.24598 -0.66951 -0.37666 -0.04792 0.45777 1.44414 1.46685 1.53445 1.94624 2.31673 2.45286 2.78065 3.17742 3.26225 3.57707 3.66142 3.90110 4.08367 4.12774 4.27787 4.52154 4.60975 4.67958 4.72670 4.77772 4.84428 4.92646 4.96401 5.01804 5.11841 5.13913 5.18386 5.19481 5.59283 5.61259 5.71136 5.86112 6.11046 6.29146 6.82444 7.44302 8.93490 Molecular weight = 361.01amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.003954 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.466087 B = 7079.517053 C = 8272.864197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.004 4.004 3 C -0.127 4.127 4 C -0.008 4.008 5 C -0.682 4.682 6 S 2.690 3.310 7 O -0.979 6.979 8 O -0.995 6.995 9 N -0.987 5.987 10 C 0.098 3.902 11 C 0.272 3.728 12 H 0.026 0.974 13 C -0.136 4.136 14 C -0.538 4.538 15 H 0.059 0.941 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.956 3.044 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.265 1.265 22 C -0.005 4.005 23 C -0.130 4.130 24 Br -0.034 7.034 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.028 0.972 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.265 0.735 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.758 9.036 5.224 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.028 4.028 5 C -0.771 4.771 6 S 2.784 3.216 7 O -0.969 6.969 8 O -0.986 6.986 9 N -0.827 5.827 10 C -0.047 4.047 11 C 0.168 3.832 12 H 0.044 0.956 13 C -0.196 4.196 14 C -0.577 4.577 15 H 0.078 0.922 16 C -0.181 4.181 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.204 1.204 20 H -0.208 1.208 21 H -0.190 1.190 22 C -0.026 4.026 23 C -0.210 4.210 24 Br 0.051 6.949 25 H 0.118 0.882 26 H 0.123 0.877 27 H 0.096 0.904 28 H 0.202 0.798 29 H 0.182 0.818 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.567 8.247 5.858 21.144 hybrid contribution 0.910 -0.458 -0.574 1.169 sum -17.658 7.789 5.284 20.009 Atomic orbital electron populations 1.21233 0.87163 1.05437 1.04869 1.20581 0.98707 0.90925 0.90401 1.21623 0.93201 0.98939 1.00841 1.21398 0.95863 0.96287 0.89222 1.30911 1.26542 1.00002 1.19653 1.01649 0.74581 0.72374 0.73019 1.93489 1.81837 1.44009 1.77612 1.93521 1.81917 1.45455 1.77692 1.57287 1.81169 1.13793 1.30423 1.21465 1.01433 0.82798 0.99008 1.18458 0.95006 0.79093 0.90682 0.95609 1.21931 0.95797 1.02544 0.99300 1.21595 0.96241 1.03834 1.36077 0.92235 1.25636 1.01400 0.95124 0.95965 1.69969 1.36332 1.07686 1.41326 0.85654 0.80240 0.77617 0.78390 1.20439 1.20789 1.18977 1.20848 0.93595 0.97368 0.90824 1.21975 0.94091 0.93210 1.11740 1.96679 1.74230 1.26269 1.97703 0.88205 0.87738 0.90384 0.79840 0.81806 0.93345 0.90207 0.89573 0.95318 0.93450 0.91292 0.92611 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.55 71.24 0.68 -0.95 16 2 C 0.00 -0.08 5.88 -19.85 -0.12 -0.19 16 3 C -0.13 -2.28 9.70 22.27 0.22 -2.06 16 4 C -0.01 -0.20 9.52 22.27 0.21 0.02 16 5 C -0.68 -21.78 5.97 22.27 0.13 -21.65 16 6 S 2.69 106.55 5.64 -56.49 -0.32 106.24 16 7 O -0.98 -38.47 16.36 -128.00 -2.09 -40.56 16 8 O -1.00 -47.96 15.85 -128.00 -2.03 -49.98 16 9 N -0.99 -40.57 3.06 -520.43 -1.59 -42.17 16 10 C 0.10 3.25 9.53 127.77 1.22 4.47 16 11 C 0.27 13.44 2.62 44.25 0.12 13.55 16 12 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 13 C -0.14 -6.18 8.95 71.98 0.64 -5.54 16 14 C -0.54 -29.09 8.37 25.60 0.21 -28.87 16 15 H 0.06 3.17 7.65 -2.91 -0.02 3.15 16 16 C 0.02 1.02 5.30 84.65 0.45 1.47 16 17 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 18 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 22 C -0.01 -0.17 9.26 22.29 0.21 0.04 16 23 C -0.13 -3.47 6.22 22.31 0.14 -3.33 16 24 Br -0.03 -0.83 31.79 -20.37 -0.65 -1.48 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 27 H 0.08 1.07 6.65 -2.39 -0.02 1.06 16 28 H 0.18 1.64 8.06 -2.92 -0.02 1.61 16 29 H 0.16 3.19 7.62 -2.92 -0.02 3.17 16 30 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.08 2.54 6.43 -2.39 -0.02 2.53 16 32 H 0.09 2.20 7.79 -2.39 -0.02 2.18 16 33 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 1.98 6.66 -2.39 -0.02 1.96 16 35 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.44 16 37 H 0.13 4.66 7.62 -2.91 -0.02 4.64 16 Total: -1.00 -69.11 338.03 0.78 -68.33 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.09 Total: 8.72 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 4.11 Total: -43.05 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -1.35 Total: -93.44 kcal Atomic # 8 Polarization: -86.43 SS G_CDS: -4.12 Total: -90.55 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 106.55 SS G_CDS: -0.32 Total: 106.24 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.65 Total: -1.48 kcal Total: -69.11 0.78 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.763 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds